Csa6G490800 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G490800
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 23372254 .. 23372722 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAACTCCTTCTGAGATTTCATCTATTACACATAACTTAGCCTTATGTTCAAAACTATGGCCCCAACCAAGCTAAGCTTTGCCTTTCTTTTCATTTCCCTTTTAATTTTGTGTCATCTTGTAGATCCTGCATTCAGCAGGCCACTGACAACCCATACAATTCACCAACAACTCTCTGACACCCTTCCAAAAAACCCCCATTTCCAACTCCATGGTCAAACTCTGCATGAAGGAAAAGCCTCAAACGACGATGCTGTTTCTACTCCAAACCCGAACCCTCCCTCAGCAGCTGCAAGTTCGACTCCAGGCCGGAAGATGGACGACTTCAGGCCAACCACCCCTGGCCATAGCCCTGGCGTTGGTCATTCCATTGAGAACTAAAGCACCAATATAATAGTCTTATTAATTATTGGTTCTTATATTCCTCAACAAAGAACAAAAAGGAACGATGAAACGATGTTATTGCATCC

mRNA sequence

ATGTTCAAAACTATGGCCCCAACCAAGCTAAGCTTTGCCTTTCTTTTCATTTCCCTTTTAATTTTGTGTCATCTTGTAGATCCTGCATTCAGCAGGCCACTGACAACCCATACAATTCACCAACAACTCTCTGACACCCTTCCAAAAAACCCCCATTTCCAACTCCATGGTCAAACTCTGCATGAAGGAAAAGCCTCAAACGACGATGCTGTTTCTACTCCAAACCCGAACCCTCCCTCAGCAGCTGCAAGTTCGACTCCAGGCCGGAAGATGGACGACTTCAGGCCAACCACCCCTGGCCATAGCCCTGGCGTTGGTCATTCCATTGAGAACTAA

Coding sequence (CDS)

ATGTTCAAAACTATGGCCCCAACCAAGCTAAGCTTTGCCTTTCTTTTCATTTCCCTTTTAATTTTGTGTCATCTTGTAGATCCTGCATTCAGCAGGCCACTGACAACCCATACAATTCACCAACAACTCTCTGACACCCTTCCAAAAAACCCCCATTTCCAACTCCATGGTCAAACTCTGCATGAAGGAAAAGCCTCAAACGACGATGCTGTTTCTACTCCAAACCCGAACCCTCCCTCAGCAGCTGCAAGTTCGACTCCAGGCCGGAAGATGGACGACTTCAGGCCAACCACCCCTGGCCATAGCCCTGGCGTTGGTCATTCCATTGAGAACTAA

Protein sequence

MFKTMAPTKLSFAFLFISLLILCHLVDPAFSRPLTTHTIHQQLSDTLPKNPHFQLHGQTLHEGKASNDDAVSTPNPNPPSAAASSTPGRKMDDFRPTTPGHSPGVGHSIEN*

Homology

[Close]

BLAST of Csa6G490800 vs. TrEMBL
Match: A0A0A0KLC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G490800 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 7.8e-59
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


Query: 1   MFKTMAPTKLSFAFLFISLLILCHLVDPAFSRPLTTHTIHQQLSDTLPKNPHFQLHGQTL 60
           MFKTMAPTKLSFAFLFISLLILCHLVDPAFSRPLTTHTIHQQLSDTLPKNPHFQLHGQTL
Sbjct: 1   MFKTMAPTKLSFAFLFISLLILCHLVDPAFSRPLTTHTIHQQLSDTLPKNPHFQLHGQTL 60

Query: 61  HEGKASNDDAVSTPNPNPPSAAASSTPGRKMDDFRPTTPGHSPGVGHSIEN 112
           HEGKASNDDAVSTPNPNPPSAAASSTPGRKMDDFRPTTPGHSPGVGHSIEN
Sbjct: 61  HEGKASNDDAVSTPNPNPPSAAASSTPGRKMDDFRPTTPGHSPGVGHSIEN 111

[Close]

BLAST of Csa6G490800 vs. TrEMBL
Match: A0A059AML3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00948 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.1e-11
Identity = 49/126 (38.89%), Postives = 65/126 (51.59%), Query Frame = 1


Query: 5   MAPTKLSFAFLFISLLILCHL-----------VDPAFSRPLTTHTIHQQLSDTLPKNPHF 64
           MAP K+ +AF F+ L +   L           +    S P     +H+ L   L K    
Sbjct: 1   MAPNKVLYAFAFLLLALSLELQSTQARQLKLTMQKQKSFPNKLPNVHKLLEKELRKTIAE 60

Query: 65  Q---LHGQTLHEGKASNDDAVSTPNPNPPSAAASST-----PGRKMDDFRPTTPGHSPGV 112
           Q   LHG+ L+  KA+N    +TP P P S   ++T     PGR +DDFRPT PGHSPGV
Sbjct: 61  QSRNLHGEILN--KATNTAVSTTPAPPPSSTIVAATTPPPSPGRSLDDFRPTQPGHSPGV 120

[Close]

BLAST of Csa6G490800 vs. TrEMBL
Match: A0A059AMU0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00950 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.1e-11
Identity = 49/127 (38.58%), Postives = 69/127 (54.33%), Query Frame = 1


Query: 5   MAPTKLSFAFLFISLLILCHLVDPAFSRPLTTHTIHQQ--------LSDTLPKNPHFQL- 64
           MA  ++  AFLF+ L+  C  +    +R L   +  Q         ++  L K P   + 
Sbjct: 1   MAQNRVLVAFLFL-LVAFCLKLRSTQARQLKLTSQEQNPFPNELRHVNKLLGKEPRKTIA 60

Query: 65  ------HGQTLHEGKASNDDAVSTPNPNPPSAAASST-----PGRKMDDFRPTTPGHSPG 112
                  G+TL+E  A+N DA S+P P+PP+A   +T     PGR +DDFRPT PGHSPG
Sbjct: 61  EQSKNWRGETLNE--ATNTDASSSPPPSPPTAMVGATTPPPSPGRSLDDFRPTAPGHSPG 120

[Close]

BLAST of Csa6G490800 vs. TrEMBL
Match: A0A059BZX8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F04319 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.9e-11
Identity = 49/126 (38.89%), Postives = 65/126 (51.59%), Query Frame = 1


Query: 5   MAPTKLSFAFLFISLLILCHL-----------VDPAFSRPLTTHTIHQQLSDTLPKNPHF 64
           MAP K+ +AF F+ L +   L           +    S P     +H+ L   L K    
Sbjct: 1   MAPNKVLYAFAFLLLALSLELQSTQARQLKLTMQKQKSFPNKLPNVHKLLEKELRKTIAE 60

Query: 65  Q---LHGQTLHEGKASNDDAVSTPNPNPPSAAASST-----PGRKMDDFRPTTPGHSPGV 112
           Q   LHG+ L+  KA+N    +TP P P S   ++T     PGR +DDFRPT PGHSPGV
Sbjct: 61  QSRNLHGEILN--KATNAAVSTTPAPPPSSTIVAATTPPPSPGRSLDDFRPTQPGHSPGV 120

[Close]

BLAST of Csa6G490800 vs. TrEMBL
Match: A0A059ANL6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00949 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-09
Identity = 46/124 (37.10%), Postives = 62/124 (50.00%), Query Frame = 1


Query: 5   MAPTKLSFAFLFISLLILCHLVDPAFSRPLTTHTIHQQLSDTLP-------KNPHFQLHG 64
           MAP K+ +AF F+ L +   L      +   T    +   + LP       K P   +  
Sbjct: 1   MAPNKVLYAFAFLLLALSLELQSTQARQLKLTMQKQKSFPNKLPNVHKLLEKEPRKTIAE 60

Query: 65  QT--LHE---GKASNDDAVSTPNPNPPSAAASST-----PGRKMDDFRPTTPGHSPGVGH 112
           Q+  LH     KA+N    +TP P P S   ++T     PGR +DDFRPT PGHSPGVGH
Sbjct: 61  QSKNLHSEILNKATNTAVSTTPAPPPSSTIVAATTALPSPGRSLDDFRPTEPGHSPGVGH 120

[Close]

BLAST of Csa6G490800 vs. TAIR10
Match: AT5G66815.1 (AT5G66815.1 unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 7.3e-08
Identity = 22/44 (50.00%), Postives = 27/44 (61.36%), Query Frame = 1


Query: 68  DDAVSTPNPNPPSAAASSTPGRKMDDFRPTTPGHSPGVGHSIEN 112
           DD     +P PP    S + G+  +DFRPTTPGHSPG+GHS+ +
Sbjct: 61  DDKAMQFSPPPPPPPPSQSGGKDAEDFRPTTPGHSPGIGHSLSH 104

[Close]

BLAST of Csa6G490800 vs. TAIR10
Match: AT3G50610.1 (AT3G50610.1 unknown protein)

HSP 1 Score: 50.8 bits (120), Expect = 6.2e-07
Identity = 24/58 (41.38%), Postives = 36/58 (62.07%), Query Frame = 1


Query: 54  QLHGQTLHEGKASNDDAVSTPNPNPPSAAASSTPGRKMDDFRPTTPGHSPGVGHSIEN 112
           +++GQ   +  +++D A +TP  +P          +K DDF+PTTPGHSPGVGH+++N
Sbjct: 173 KMNGQDHFKTGSTDDFAPTTPGNSPGMGH------KKGDDFKPTTPGHSPGVGHAVKN 224

HSP 2 Score: 38.1 bits (87), Expect = 4.2e-03
Identity = 15/20 (75.00%), Postives = 14/20 (70.00%), Query Frame = 1


Query: 92  DDFRPTTPGHSPGVGHSIEN 112
           DDF PT+PGHSPGVGH   N
Sbjct: 82  DDFAPTSPGHSPGVGHKKGN 101

HSP 3 Score: 34.7 bits (78), Expect = 4.6e-02
Identity = 14/20 (70.00%), Postives = 14/20 (70.00%), Query Frame = 1


Query: 92  DDFRPTTPGHSPGVGHSIEN 112
           DDF PT+PG+SPGVGH   N
Sbjct: 30  DDFVPTSPGNSPGVGHKKGN 49

HSP 4 Score: 34.7 bits (78), Expect = 4.6e-02
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 1


Query: 92  DDFRPTTPGHSPGVGH 108
           DDF PT+PG+SPG+GH
Sbjct: 134 DDFAPTSPGNSPGIGH 149

[Close]

BLAST of Csa6G490800 vs. TAIR10
Match: AT2G23440.1 (AT2G23440.1 unknown protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-06
Identity = 20/40 (50.00%), Postives = 24/40 (60.00%), Query Frame = 1


Query: 72  STPNPNPPSAAASSTPGRKMDDFRPTTPGHSPGVGHSIEN 112
           S  + +PP+    S P   +D FRPT PGHSPG+GHS+ N
Sbjct: 43  SVLSSSPPTEPLESPPSHGVDTFRPTEPGHSPGIGHSVHN 82

[Close]

BLAST of Csa6G490800 vs. NCBI nr
Match: gi|700193312|gb|KGN48516.1| (hypothetical protein Csa_6G490800 [Cucumis sativus])

HSP 1 Score: 234.2 bits (596), Expect = 1.1e-58
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


Query: 1   MFKTMAPTKLSFAFLFISLLILCHLVDPAFSRPLTTHTIHQQLSDTLPKNPHFQLHGQTL 60
           MFKTMAPTKLSFAFLFISLLILCHLVDPAFSRPLTTHTIHQQLSDTLPKNPHFQLHGQTL
Sbjct: 1   MFKTMAPTKLSFAFLFISLLILCHLVDPAFSRPLTTHTIHQQLSDTLPKNPHFQLHGQTL 60

Query: 61  HEGKASNDDAVSTPNPNPPSAAASSTPGRKMDDFRPTTPGHSPGVGHSIEN 112
           HEGKASNDDAVSTPNPNPPSAAASSTPGRKMDDFRPTTPGHSPGVGHSIEN
Sbjct: 61  HEGKASNDDAVSTPNPNPPSAAASSTPGRKMDDFRPTTPGHSPGVGHSIEN 111

[Close]

BLAST of Csa6G490800 vs. NCBI nr
Match: gi|702470625|ref|XP_010030585.1| (PREDICTED: uncharacterized protein LOC104420442 [Eucalyptus grandis])

HSP 1 Score: 75.1 bits (183), Expect = 8.7e-11
Identity = 49/127 (38.58%), Postives = 69/127 (54.33%), Query Frame = 1


Query: 5   MAPTKLSFAFLFISLLILCHLVDPAFSRPLTTHTIHQQ--------LSDTLPKNPHFQL- 64
           MA  ++  AFLF+ L+  C  +    +R L   +  Q         ++  L K P   + 
Sbjct: 1   MAQNRVLVAFLFL-LVAFCLKLRSTQARQLKLTSQEQNPFPNELRHVNKLLGKEPRKTIA 60

Query: 65  ------HGQTLHEGKASNDDAVSTPNPNPPSAAASST-----PGRKMDDFRPTTPGHSPG 112
                  G+TL+E  A+N DA S+P P+PP+A   +T     PGR +DDFRPT PGHSPG
Sbjct: 61  EQSKNWRGETLNE--ATNTDASSSPPPSPPTAMVGATTPPPSPGRSLDDFRPTAPGHSPG 120

[Close]

BLAST of Csa6G490800 vs. NCBI nr
Match: gi|702470621|ref|XP_010030584.1| (PREDICTED: uncharacterized protein LOC104420440 [Eucalyptus grandis])

HSP 1 Score: 75.1 bits (183), Expect = 8.7e-11
Identity = 49/126 (38.89%), Postives = 65/126 (51.59%), Query Frame = 1


Query: 5   MAPTKLSFAFLFISLLILCHL-----------VDPAFSRPLTTHTIHQQLSDTLPKNPHF 64
           MAP K+ +AF F+ L +   L           +    S P     +H+ L   L K    
Sbjct: 1   MAPNKVLYAFAFLLLALSLELQSTQARQLKLTMQKQKSFPNKLPNVHKLLEKELRKTIAE 60

Query: 65  Q---LHGQTLHEGKASNDDAVSTPNPNPPSAAASST-----PGRKMDDFRPTTPGHSPGV 112
           Q   LHG+ L+  KA+N    +TP P P S   ++T     PGR +DDFRPT PGHSPGV
Sbjct: 61  QSRNLHGEILN--KATNTAVSTTPAPPPSSTIVAATTPPPSPGRSLDDFRPTQPGHSPGV 120

[Close]

BLAST of Csa6G490800 vs. NCBI nr
Match: gi|702387884|ref|XP_010065131.1| (PREDICTED: uncharacterized protein LOC104452361 [Eucalyptus grandis])

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 49/126 (38.89%), Postives = 65/126 (51.59%), Query Frame = 1


Query: 5   MAPTKLSFAFLFISLLILCHL-----------VDPAFSRPLTTHTIHQQLSDTLPKNPHF 64
           MAP K+ +AF F+ L +   L           +    S P     +H+ L   L K    
Sbjct: 1   MAPNKVLYAFAFLLLALSLELQSTQARQLKLTMQKQKSFPNKLPNVHKLLEKELRKTIAE 60

Query: 65  Q---LHGQTLHEGKASNDDAVSTPNPNPPSAAASST-----PGRKMDDFRPTTPGHSPGV 112
           Q   LHG+ L+  KA+N    +TP P P S   ++T     PGR +DDFRPT PGHSPGV
Sbjct: 61  QSRNLHGEILN--KATNAAVSTTPAPPPSSTIVAATTPPPSPGRSLDDFRPTQPGHSPGV 120

[Close]

BLAST of Csa6G490800 vs. NCBI nr
Match: gi|629105755|gb|KCW71224.1| (hypothetical protein EUGRSUZ_F04318 [Eucalyptus grandis])

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 49/126 (38.89%), Postives = 64/126 (50.79%), Query Frame = 1


Query: 5   MAPTKLSFAFLFISLLILCHL-----------VDPAFSRPLTTHTIHQQLSDTLPKNPHF 64
           MAP K+ +AF F+ L +   L           V    S P     +H+ L     K    
Sbjct: 1   MAPNKVLYAFAFLLLALSLELQSTQARQLKLTVQKQKSFPNKLPNVHKLLEKEPRKTIAE 60

Query: 65  Q---LHGQTLHEGKASNDDAVSTPNPNPPSAAASST-----PGRKMDDFRPTTPGHSPGV 112
           Q   LHG+ L+  KA+N D  +TP P PP    ++T     P R +DDFRPT PGHSPGV
Sbjct: 61  QSKNLHGEILN--KATNTDVSTTPAPPPPRTMVAATTPPPSPERSLDDFRPTEPGHSPGV 120

The following BLAST results are available for this feature:

BLAST of Csa6G490800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLC0_CUCSA	7.8e-59	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G490800 PE=4 SV=1	[more]
A0A059AML3_EUCGR	6.1e-11	38.89	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00948 PE=4 SV=1	[more]
A0A059AMU0_EUCGR	6.1e-11	38.58	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00950 PE=4 SV=1	[more]
A0A059BZX8_EUCGR	7.9e-11	38.89	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F04319 PE=4 SV=1	[more]
A0A059ANL6_EUCGR	1.1e-09	37.10	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00949 PE=4 SV=1	[more]

BLAST of Csa6G490800 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G66815.1	7.3e-08	50.00	unknown protein	[more]
AT3G50610.1	6.2e-07	41.38	unknown protein	[more]
AT2G23440.1	1.1e-06	50.00	unknown protein	[more]

BLAST of Csa6G490800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193312\|gb\|KGN48516.1\|	1.1e-58	100.00	hypothetical protein Csa_6G490800 [Cucumis sativus]	[more]
gi\|702470625\|ref\|XP_010030585.1\|	8.7e-11	38.58	PREDICTED: uncharacterized protein LOC104420442 [Eucalyptus grandis]	[more]
gi\|702470621\|ref\|XP_010030584.1\|	8.7e-11	38.89	PREDICTED: uncharacterized protein LOC104420440 [Eucalyptus grandis]	[more]
gi\|702387884\|ref\|XP_010065131.1\|	1.1e-10	38.89	PREDICTED: uncharacterized protein LOC104452361 [Eucalyptus grandis]	[more]
gi\|629105755\|gb\|KCW71224.1\|	1.1e-10	38.89	hypothetical protein EUGRSUZ_F04318 [Eucalyptus grandis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
biological_process	GO:0048364	root development
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0008146	sulfotransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G490800.1	Csa6G490800.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G490800	Cla001831	Watermelon (97103) v1	cuwmB500
Csa6G490800	MELO3C007553	Melon (DHL92) v3.5.1	cumeB503
Csa6G490800	ClCG01G016740	Watermelon (Charleston Gray)	cuwcgB432
Csa6G490800	MELO3C007553.2	Melon (DHL92) v3.6.1	cumedB483
Csa6G490800	Cla97C01G015810	Watermelon (97103) v2	cuwmbB412
Csa6G490800	Bhi03G001449	Wax gourd	cuwgoB630
Csa6G490800	CSPI06G28030	Wild cucumber (PI 183967)	cpicuB313
Csa6G490800	Cucsa.102340	Cucumber (Gy14) v1	cgycuB121
Csa6G490800	CmaCh07G007110	Cucurbita maxima (Rimu)	cmacuB877
Csa6G490800	CmoCh07G007270	Cucurbita moschata (Rifu)	cmocuB865
Csa6G490800	Cp4.1LG10g02540	Cucurbita pepo (Zucchini)	cpecuB085
Csa6G490800	Cp4.1LG19g11270	Cucurbita pepo (Zucchini)	cpecuB503
Csa6G490800	CsGy6G027480	Cucumber (Gy14) v2	cgybcuB281
Csa6G490800	Carg00848	Silver-seed gourd	carcuB0441
Csa6G490800	Carg05226	Silver-seed gourd	carcuB0826

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G490800	Silver-seed gourd	carcuB0205
Csa6G490800	Wax gourd	cuwgoB603
Csa6G490800	Cucurbita maxima (Rimu)	cmacuB033
Csa6G490800	Cucurbita maxima (Rimu)	cmacuB144
Csa6G490800	Cucurbita maxima (Rimu)	cmacuB681
Csa6G490800	Cucurbita maxima (Rimu)	cmacuB809
Csa6G490800	Cucurbita moschata (Rifu)	cmocuB023
Csa6G490800	Cucurbita moschata (Rifu)	cmocuB475
Csa6G490800	Cucurbita moschata (Rifu)	cmocuB670
Csa6G490800	Melon (DHL92) v3.5.1	cumeB438
Csa6G490800	Melon (DHL92) v3.5.1	cumeB501
Csa6G490800	Cucurbita pepo (Zucchini)	cpecuB256
Csa6G490800	Cucurbita pepo (Zucchini)	cpecuB583
Csa6G490800	Cucurbita pepo (Zucchini)	cpecuB686
Csa6G490800	Bottle gourd (USVL1VR-Ls)	culsiB420
Csa6G490800	Bottle gourd (USVL1VR-Ls)	culsiB434
Csa6G490800	Bottle gourd (USVL1VR-Ls)	culsiB454
Csa6G490800	Cucumber (Gy14) v2	cgybcuB186
Csa6G490800	Melon (DHL92) v3.6.1	cumedB415
Csa6G490800	Melon (DHL92) v3.6.1	cumedB481