Cp4.1LG19g11270 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG19g11270
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG19 : 5035210 .. 5035521 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACCAACCAACCTAAGCTTTGCCTTTCTTTGCATTGCCCTTCTAGTTTTCTCTCATTTTATAGATTCTGCCTCCAGCAGGCCACTCAAAACACACACAAATCACCAACTCTCTGCCAGGTCAGCAAAAGAGGCTCATTTCCAATTCCATGGTGAAAGTGTAGAGGAAGGAAAAGGAACATATGGCGCTGCTTCTAGTCCAAGCCCTCCCACCGCAGCGGCGGGTTCGTCTCCGGGCCGGAAGATGGATGACTTCAGGCCAACCACCCCCGGCCATAGCCCAGGCGTTGGCCATTCCATTCAGAACTAA

mRNA sequence

ATGCCACCAACCAACCTAAGCTTTGCCTTTCTTTGCATTGCCCTTCTAGTTTTCTCTCATTTTATAGATTCTGCCTCCAGCAGGCCACTCAAAACACACACAAATCACCAACTCTCTGCCAGGTCAGCAAAAGAGGCTCATTTCCAATTCCATGGTGAAAGTGTAGAGGAAGGAAAAGGAACATATGGCGCTGCTTCTAGTCCAAGCCCTCCCACCGCAGCGGCGGGTTCGTCTCCGGGCCGGAAGATGGATGACTTCAGGCCAACCACCCCCGGCCATAGCCCAGGCGTTGGCCATTCCATTCAGAACTAA

Coding sequence (CDS)

ATGCCACCAACCAACCTAAGCTTTGCCTTTCTTTGCATTGCCCTTCTAGTTTTCTCTCATTTTATAGATTCTGCCTCCAGCAGGCCACTCAAAACACACACAAATCACCAACTCTCTGCCAGGTCAGCAAAAGAGGCTCATTTCCAATTCCATGGTGAAAGTGTAGAGGAAGGAAAAGGAACATATGGCGCTGCTTCTAGTCCAAGCCCTCCCACCGCAGCGGCGGGTTCGTCTCCGGGCCGGAAGATGGATGACTTCAGGCCAACCACCCCCGGCCATAGCCCAGGCGTTGGCCATTCCATTCAGAACTAA

Protein sequence

MPPTNLSFAFLCIALLVFSHFIDSASSRPLKTHTNHQLSARSAKEAHFQFHGESVEEGKGTYGAASSPSPPTAAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN
BLAST of Cp4.1LG19g11270 vs. TrEMBL
Match: A0A0A0KLC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G490800 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.6e-26
Identity = 68/107 (63.55%), Postives = 79/107 (73.83%), Query Frame = 1

Query: 1   MPPTNLSFAFLCIALLVFSHFIDSASSRPLKTHTNHQ-LSARSAKEAHFQFHGESVEEGK 60
           M PT LSFAFL I+LL+  H +D A SRPL THT HQ LS    K  HFQ HG+++ EGK
Sbjct: 5   MAPTKLSFAFLFISLLILCHLVDPAFSRPLTTHTIHQQLSDTLPKNPHFQLHGQTLHEGK 64

Query: 61  GTYGAASS---PSPPTAAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 104
            +   A S   P+PP+AAA S+PGRKMDDFRPTTPGHSPGVGHSI+N
Sbjct: 65  ASNDDAVSTPNPNPPSAAASSTPGRKMDDFRPTTPGHSPGVGHSIEN 111

BLAST of Cp4.1LG19g11270 vs. TrEMBL
Match: A0A059AMU0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00950 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.4e-07
Identity = 48/120 (40.00%), Postives = 61/120 (50.83%), Query Frame = 1

Query: 6   LSFAFLCIALLVFSHFIDSASSRPLKT-------------HTNHQLSARSAK---EAHFQ 65
           ++F FL +A   F   + S  +R LK              H N  L     K   E    
Sbjct: 8   VAFLFLLVA---FCLKLRSTQARQLKLTSQEQNPFPNELRHVNKLLGKEPRKTIAEQSKN 67

Query: 66  FHGESVEEGKGTYGAASSP-SPPTAAAGS-----SPGRKMDDFRPTTPGHSPGVGHSIQN 104
           + GE++ E   T  ++S P SPPTA  G+     SPGR +DDFRPT PGHSPGVGHS+QN
Sbjct: 68  WRGETLNEATNTDASSSPPPSPPTAMVGATTPPPSPGRSLDDFRPTAPGHSPGVGHSLQN 124

BLAST of Cp4.1LG19g11270 vs. TAIR10
Match: AT2G23440.1 (AT2G23440.1 unknown protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-06
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = 1

Query: 63  GAASSPSPPTAAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 104
           G+  S SPPT    S P   +D FRPT PGHSPG+GHS+ N
Sbjct: 42  GSVLSSSPPTEPLESPPSHGVDTFRPTEPGHSPGIGHSVHN 82

BLAST of Cp4.1LG19g11270 vs. TAIR10
Match: AT5G66815.1 (AT5G66815.1 unknown protein)

HSP 1 Score: 48.9 bits (115), Expect = 2.2e-06
Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 1

Query: 67  SPSPPTAAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 104
           SP PP      S G+  +DFRPTTPGHSPG+GHS+ +
Sbjct: 68  SPPPPPPPPSQSGGKDAEDFRPTTPGHSPGIGHSLSH 104

BLAST of Cp4.1LG19g11270 vs. NCBI nr
Match: gi|700193312|gb|KGN48516.1| (hypothetical protein Csa_6G490800 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 5.2e-26
Identity = 68/107 (63.55%), Postives = 79/107 (73.83%), Query Frame = 1

Query: 1   MPPTNLSFAFLCIALLVFSHFIDSASSRPLKTHTNHQ-LSARSAKEAHFQFHGESVEEGK 60
           M PT LSFAFL I+LL+  H +D A SRPL THT HQ LS    K  HFQ HG+++ EGK
Sbjct: 5   MAPTKLSFAFLFISLLILCHLVDPAFSRPLTTHTIHQQLSDTLPKNPHFQLHGQTLHEGK 64

Query: 61  GTYGAASS---PSPPTAAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 104
            +   A S   P+PP+AAA S+PGRKMDDFRPTTPGHSPGVGHSI+N
Sbjct: 65  ASNDDAVSTPNPNPPSAAASSTPGRKMDDFRPTTPGHSPGVGHSIEN 111

BLAST of Cp4.1LG19g11270 vs. NCBI nr
Match: gi|702470625|ref|XP_010030585.1| (PREDICTED: uncharacterized protein LOC104420442 [Eucalyptus grandis])

HSP 1 Score: 61.6 bits (148), Expect = 9.2e-07
Identity = 48/120 (40.00%), Postives = 61/120 (50.83%), Query Frame = 1

Query: 6   LSFAFLCIALLVFSHFIDSASSRPLKT-------------HTNHQLSARSAK---EAHFQ 65
           ++F FL +A   F   + S  +R LK              H N  L     K   E    
Sbjct: 8   VAFLFLLVA---FCLKLRSTQARQLKLTSQEQNPFPNELRHVNKLLGKEPRKTIAEQSKN 67

Query: 66  FHGESVEEGKGTYGAASSP-SPPTAAAGS-----SPGRKMDDFRPTTPGHSPGVGHSIQN 104
           + GE++ E   T  ++S P SPPTA  G+     SPGR +DDFRPT PGHSPGVGHS+QN
Sbjct: 68  WRGETLNEATNTDASSSPPPSPPTAMVGATTPPPSPGRSLDDFRPTAPGHSPGVGHSLQN 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KLC0_CUCSA3.6e-2663.55Uncharacterized protein OS=Cucumis sativus GN=Csa_6G490800 PE=4 SV=1[more]
A0A059AMU0_EUCGR6.4e-0740.00Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00950 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G23440.11.3e-0656.10 unknown protein[more]
AT5G66815.12.2e-0656.76 unknown protein[more]
Match NameE-valueIdentityDescription
gi|700193312|gb|KGN48516.1|5.2e-2663.55hypothetical protein Csa_6G490800 [Cucumis sativus][more]
gi|702470625|ref|XP_010030585.1|9.2e-0740.00PREDICTED: uncharacterized protein LOC104420442 [Eucalyptus grandis][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
biological_process GO:0048364 root development
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0008146 sulfotransferase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g11270.1Cp4.1LG19g11270.1mRNA


The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG19g11270Cp4.1LG10g02540Cucurbita pepo (Zucchini)cpecpeB076