CsGy6G027480 (gene) Cucumber (Gy14) v2

NameCsGy6G027480
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptiontransmembrane protein
LocationChr6 : 26648479 .. 26651497 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCACTACAGGTGTGTGTGTTTTTTTAGTGGGGTTTTCACTAATGTATAGCATAGAGACATCAGATTATTAAAAAAGAAAAATAGAGTAACAAAGATAAAGAGTATTTAAAAAGAAAAGTTTGTTAAAAAAAGTGTCTAAAATTATAGATTATAAAGAGGGAGATTATTCAGGGAGTCTGTAAAAGTGTGTATGTGTATTGGAGGGAAAAAGTGTCAAAAGATTGAATAATTTTCAAACATTTTATGAAAAAAAAAAGAAACTTATTTAATATTAAATCTAAAAGTACTTTTCAGCATGTTCATTTCCCAAACTACTACTAACTTTTCCAAAATATTAAAATTGAAACCATTTTGATACTGTTTTTTTTCACCTAACACCGAATTTAATTTAAAAAAAAAAAAAAAAAAACTGTCTTTCACGCACTTCTACATTATTGTAATAAGACATAAGTAGAGAAATACCTTTAAACTATTTTAAAGCGCAAAGAAAAATCAATTTATTCTTTAAATTTTTGGAGTTGTAATTAGGGACTTATAAAGCATACCCCCAAATGTATATGACTTGGAAATAATACATGGGGTTCACTGCCTTAATCTTGGATTCAAAGATCAATTGATTGGGTAATGGGGAATGGGGAGTGGGGAATGGGGAGTGGGGAATGGGGAATGGGGATGGGCCAAAAATTAATCTCAATAAAGCAAGTAGAACAAAGATATATATATATACACACACAAGGCCCACTAGTGAGAATAGGGTATTATCAAACTCATGAGCCACTTTGCTTTAGCATATTTAGTTTTGTTGTGACAACAATAATTACAATCAGAATATTGTTCTAACATTAGTCTTCATGCATCATTGGTCAATCTCGATGTCCACTATTATTCTTGCTAAAATGTTCATAGTTTAATCGAGATAAGACATAAAGTCTTACTAAACAATTAGAATGGTTCAAATTCCATCACTTTCCGATTGTAGTACTAAAAAAATATATATTATTCTTTATATACACTAAAAAGTATATGAAACTTCATTTTCACTCGAATGAATGAAAATTTTATAAAATATCTAACTAGCGTGTTTAGATTGACAAGAACAAAATGTTCTTTTAAAAATTTTATTTTTATATATTTAATTTTTTAAGAATATAAAAATGCTTAAAATATAGGGACATTTTTTAAAATACCAAAATAAATTAAAATATTTACAATCTATATTAAAAGTTTGGATTATATCACGGATAGTCTTCTATCACTGTAGCATGTGAGTGACTATCCATTATAAAATTTGATATAGATCGTAAATATTTTGTAAAATCCACCGTTTTTTAAAATTCTCTTAAAACAAATATTTAGAAACTATTTCTGTAGCTATAAAAACTTCAAAAAGAAAAAATCCTAAAATGATCTATTGTTAAATAAACACTTGAATAATTAAGTCACTCATATTTATTTTTGTCATACCTATAATTTTAATTCTTCCCCTATACGAAATTTCGGGTACAACCATGGAATCACGAGCAATATTTGGGTGCAAACTTCCCATGCCTCCCTTCCTCTACTTACACAAAAATTAATAATAAATAATTTATTCCTAAACATTTTTATTGTAAAGAACTTTTAATTAAGTGTAACAGTGGTTTTACCGATCACATAATTGGATACTTTTGAAGAAATATTAGGGCCTTCAACTAATATAACTATATATAAATTACTAAGTAGTTGGCATTCATGTCACTTTTCTTTTAACATTCTTCATTGCAATAGTTAGAGTTTTCGGTTTTATTCAAAATGACTAGATGACGGTGGATAAGTGTTAGATAATTTTTTAGAACTTAGTTTATGTTAGTTTAGTTGTTAATTTAGTTTAATCAATATTTTAGTTTTATTATTAGCTGATTATCATATTTTCTTATAGACCTATGGCTAACAATTTTAAAGTTGCAATGAGAAAATTTTGAAATCATATATGAAAAAAGAACAATTTGTTGGAGAGTTCTCTCTCAACCTTAGACTGATCTAAACTTCATATATAATTGATTGTAGAATTGAACTAAACCTCAAACATATTAATTACATCACAAGACATCTAAGTACCAAATTCTTTAATTAATTTCGAGTGGACTTGTTTGCATTGTGTCTCATGGTTTTATTCAAATTCACACACATTACTATTAATAATCTTCCTTCACTGACATTACATTTACATTCTTTCAAATTAACAATAATCAAAACTTTGATAGGTACAAATACTGAAAATCTATGTTGAAAATATTAAAGAACTTCAAATCTTTATAGGTGAAAGCGTTTAAATATAAAAGAGCTAATCCTCTAAGGGTCAATAATAATTACTTAATTAGTAGTATTGAATAATAGGTATGATTTCCAAATTATCATATATATTAAATGAAAAATTCTCTCTTTTATGAGAATCCAAAAGTCAAAGTTTAGACCTTTCGATTCAATAAACCCCATTAGCAATTCTAATTACCTTTTTTAAAGAAAAAAAAAATCAATTGGGAGCCTAAAAAGGGGCCTCCACTGCTTTGGTGGGCTGACAATAACCCGTAATAACCTTCAACTCTCCACCTATAAATAACCCTTTAGTTTATGCTGCTTTTGCATATACTCTCTCTTAACTCCTTCTGAGATTTCATCTATTACACATAACTTAGCCTTATGTTCAAAACTATGGCCCCAACCAAGCTAAGCTTTGCCTTTCTTTTCATTTCCCTTTTAATTTTGTGTCATCTTGTAGATCCTGCATTCAGCAGGCCACTGACAACCCATACAATTCACCAACAACTCTCTGACACCCTTCCAAAAAACCCCCATTTCCAACTCCATGGTCAAACTCTGCATGAAGGAAAAGCCTCAAACGACGATGCTGTTTCTACTCCAAACCCGAACCCTCCCTCAGCAGCTGCAAGTTCGACTCCAGGCCGGAAGATGGACGACTTCAGGCCAACCACCCCTGGCCATAGCCCTGGCGTTGGTCATTCCATTGAGAACTAA

mRNA sequence

ATGTGCACTACAGATCCTGCATTCAGCAGGCCACTGACAACCCATACAATTCACCAACAACTCTCTGACACCCTTCCAAAAAACCCCCATTTCCAACTCCATGGTCAAACTCTGCATGAAGGAAAAGCCTCAAACGACGATGCTGTTTCTACTCCAAACCCGAACCCTCCCTCAGCAGCTGCAAGTTCGACTCCAGGCCGGAAGATGGACGACTTCAGGCCAACCACCCCTGGCCATAGCCCTGGCGTTGGTCATTCCATTGAGAACTAA

Coding sequence (CDS)

ATGTGCACTACAGATCCTGCATTCAGCAGGCCACTGACAACCCATACAATTCACCAACAACTCTCTGACACCCTTCCAAAAAACCCCCATTTCCAACTCCATGGTCAAACTCTGCATGAAGGAAAAGCCTCAAACGACGATGCTGTTTCTACTCCAAACCCGAACCCTCCCTCAGCAGCTGCAAGTTCGACTCCAGGCCGGAAGATGGACGACTTCAGGCCAACCACCCCTGGCCATAGCCCTGGCGTTGGTCATTCCATTGAGAACTAA

Protein sequence

MCTTDPAFSRPLTTHTIHQQLSDTLPKNPHFQLHGQTLHEGKASNDDAVSTPNPNPPSAAASSTPGRKMDDFRPTTPGHSPGVGHSIEN
BLAST of CsGy6G027480 vs. NCBI nr
Match: KGN48516.1 (hypothetical protein Csa_6G490800 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 1.1e-41
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0

Query: 5   DPAFSRPLTTHTIHQQLSDTLPKNPHFQLHGQTLHEGKASNDDAVSTPNPNPPSAAASST 64
           DPAFSRPLTTHTIHQQLSDTLPKNPHFQLHGQTLHEGKASNDDAVSTPNPNPPSAAASST
Sbjct: 27  DPAFSRPLTTHTIHQQLSDTLPKNPHFQLHGQTLHEGKASNDDAVSTPNPNPPSAAASST 86

Query: 65  PGRKMDDFRPTTPGHSPGVGHSIEN 90
           PGRKMDDFRPTTPGHSPGVGHSIEN
Sbjct: 87  PGRKMDDFRPTTPGHSPGVGHSIEN 111

BLAST of CsGy6G027480 vs. NCBI nr
Match: OMO56709.1 (hypothetical protein CCACVL1_26342 [Corchorus capsularis])

HSP 1 Score: 57.4 bits (137), Expect = 2.9e-05
Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 0

Query: 33  LHGQTLHEGKASNDDAVSTPNPNPPSAAASSTPGRKMDDFRPTTPGHSPGVGHSIEN 90
           LHG  +   KA++ + ++   P+PPS  A + P +  +DFRPT PGHSPGVGHSI+N
Sbjct: 221 LHGVNI---KAADTNNIAQSPPSPPSVKAQAPPPKDAEDFRPTAPGHSPGVGHSIQN 274

BLAST of CsGy6G027480 vs. NCBI nr
Match: KOM45038.1 (hypothetical protein LR48_Vigan06g034400 [Vigna angularis] >BAU00198.1 hypothetical protein VIGAN_10176900 [Vigna angularis var. angularis])

HSP 1 Score: 57.0 bits (136), Expect = 3.8e-05
Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = 0

Query: 18 HQQLSDTLPKNPHFQLHGQTLHEGKASNDDAVSTPNPNPPSAAASSTPGRKMDDFRPTTP 77
          H +L +T+    H Q+ G+      A  +  VS   P PPS AA   PGR +D+FRPT P
Sbjct: 29 HLKLEETI----HLQMQGRIWKTNVAPFEVGVSP--PAPPSVAA---PGRDVDNFRPTAP 88

Query: 78 GHSPGVGHSIEN 90
          GHSPGVGHS+ N
Sbjct: 89 GHSPGVGHSVHN 91

BLAST of CsGy6G027480 vs. NCBI nr
Match: POE82592.1 (hypothetical protein CFP56_46441 [Quercus suber])

HSP 1 Score: 56.6 bits (135), Expect = 5.0e-05
Identity = 30/59 (50.85%), Postives = 35/59 (59.32%), Query Frame = 0

Query: 34  HGQTLHEGKASNDDAVSTPNPNPPSAAASS---TPGRKMDDFRPTTPGHSPGVGHSIEN 90
           H   LH    SN++  S   P  P+   S     P R +DDFRPTTPGHSPGVGHSI+N
Sbjct: 53  HDDRLHGDDKSNEEITSVSPPTLPTVNVSQPPPPPNRGVDDFRPTTPGHSPGVGHSIQN 111

BLAST of CsGy6G027480 vs. NCBI nr
Match: OMP02048.1 (hypothetical protein COLO4_11388 [Corchorus olitorius])

HSP 1 Score: 56.2 bits (134), Expect = 6.5e-05
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 0

Query: 32  QLHGQTLHEGKASNDDAVSTPNPNPPSAAASSTPGRKMDDFRPTTPGHSPGVGHSIEN 90
           +LHG  ++  KA++ +   +P P+PPS  A + P +  +DFRPT PGHSPGVGHSI+N
Sbjct: 57  KLHGDGVNI-KAADTNIAQSP-PSPPSVKAQAPPPKDAEDFRPTAPGHSPGVGHSIQN 112

BLAST of CsGy6G027480 vs. TAIR10
Match: AT2G23440.1 (unknown protein)

HSP 1 Score: 45.4 bits (106), Expect = 2.1e-05
Identity = 20/40 (50.00%), Postives = 26/40 (65.00%), Query Frame = 0

Query: 50 STPNPNPPSAAASSTPGRKMDDFRPTTPGHSPGVGHSIEN 90
          S  + +PP+    S P   +D FRPT PGHSPG+GHS+ N
Sbjct: 43 SVLSSSPPTEPLESPPSHGVDTFRPTEPGHSPGIGHSVHN 82

BLAST of CsGy6G027480 vs. TAIR10
Match: AT5G66815.1 (unknown protein)

HSP 1 Score: 41.2 bits (95), Expect = 3.9e-04
Identity = 15/20 (75.00%), Postives = 19/20 (95.00%), Query Frame = 0

Query: 70  DDFRPTTPGHSPGVGHSIEN 90
           +DFRPTTPGHSPG+GHS+ +
Sbjct: 85  EDFRPTTPGHSPGIGHSLSH 104

BLAST of CsGy6G027480 vs. Swiss-Prot
Match: sp|O80460|PCEP3_ARATH (Precursor of CEP3 OS=Arabidopsis thaliana OX=3702 GN=CEP3 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.7e-04
Identity = 20/40 (50.00%), Postives = 26/40 (65.00%), Query Frame = 0

Query: 50 STPNPNPPSAAASSTPGRKMDDFRPTTPGHSPGVGHSIEN 90
          S  + +PP+    S P   +D FRPT PGHSPG+GHS+ N
Sbjct: 43 SVLSSSPPTEPLESPPSHGVDTFRPTEPGHSPGIGHSVHN 82

BLAST of CsGy6G027480 vs. TrEMBL
Match: tr|A0A0A0KLC0|A0A0A0KLC0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490800 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 7.5e-42
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0

Query: 5   DPAFSRPLTTHTIHQQLSDTLPKNPHFQLHGQTLHEGKASNDDAVSTPNPNPPSAAASST 64
           DPAFSRPLTTHTIHQQLSDTLPKNPHFQLHGQTLHEGKASNDDAVSTPNPNPPSAAASST
Sbjct: 27  DPAFSRPLTTHTIHQQLSDTLPKNPHFQLHGQTLHEGKASNDDAVSTPNPNPPSAAASST 86

Query: 65  PGRKMDDFRPTTPGHSPGVGHSIEN 90
           PGRKMDDFRPTTPGHSPGVGHSIEN
Sbjct: 87  PGRKMDDFRPTTPGHSPGVGHSIEN 111

BLAST of CsGy6G027480 vs. TrEMBL
Match: tr|A0A2N9HI50|A0A2N9HI50_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39764 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.6e-06
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 0

Query: 34  HGQTLHEGKASNDDAVSTPNPNPPSAAASST---PGRKMDDFRPTTPGHSPGVGHSIEN 90
           HG  LH    +N+  + +P P PPS   S +   P R +DDFRPT+PGHSPGVGHSI+N
Sbjct: 55  HGGELHGEDITNEATLVSP-PTPPSLGVSQSPTXPSRSVDDFRPTSPGHSPGVGHSIQN 112

BLAST of CsGy6G027480 vs. TrEMBL
Match: tr|A0A1R3GF58|A0A1R3GF58_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_26342 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-05
Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 0

Query: 33  LHGQTLHEGKASNDDAVSTPNPNPPSAAASSTPGRKMDDFRPTTPGHSPGVGHSIEN 90
           LHG  +   KA++ + ++   P+PPS  A + P +  +DFRPT PGHSPGVGHSI+N
Sbjct: 221 LHGVNI---KAADTNNIAQSPPSPPSVKAQAPPPKDAEDFRPTAPGHSPGVGHSIQN 274

BLAST of CsGy6G027480 vs. TrEMBL
Match: tr|A0A2N9H8T0|A0A2N9H8T0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35942 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.5e-05
Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 0

Query: 34  HGQTLHEGKASNDDAVSTPNPNPPSAAASSTP---GRKMDDFRPTTPGHSPGVGHSIEN 90
           HG  LH    +N+  + +P P PPS   S +P    R +D+FRPT+PGHSPGVGHSI+N
Sbjct: 55  HGGELHGEDITNEATLVSP-PTPPSLGVSQSPTXXSRSVDNFRPTSPGHSPGVGHSIQN 112

BLAST of CsGy6G027480 vs. TrEMBL
Match: tr|A0A0L9UQM6|A0A0L9UQM6_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan06g034400 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.5e-05
Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = 0

Query: 18 HQQLSDTLPKNPHFQLHGQTLHEGKASNDDAVSTPNPNPPSAAASSTPGRKMDDFRPTTP 77
          H +L +T+    H Q+ G+      A  +  VS   P PPS AA   PGR +D+FRPT P
Sbjct: 29 HLKLEETI----HLQMQGRIWKTNVAPFEVGVSP--PAPPSVAA---PGRDVDNFRPTAP 88

Query: 78 GHSPGVGHSIEN 90
          GHSPGVGHS+ N
Sbjct: 89 GHSPGVGHSVHN 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN48516.11.1e-41100.00hypothetical protein Csa_6G490800 [Cucumis sativus][more]
OMO56709.12.9e-0549.12hypothetical protein CCACVL1_26342 [Corchorus capsularis][more]
KOM45038.13.8e-0547.22hypothetical protein LR48_Vigan06g034400 [Vigna angularis] >BAU00198.1 hypotheti... [more]
POE82592.15.0e-0550.85hypothetical protein CFP56_46441 [Quercus suber][more]
OMP02048.16.5e-0550.00hypothetical protein COLO4_11388 [Corchorus olitorius][more]
Match NameE-valueIdentityDescription
AT2G23440.12.1e-0550.00unknown protein[more]
AT5G66815.13.9e-0475.00unknown protein[more]
Match NameE-valueIdentityDescription
sp|O80460|PCEP3_ARATH3.7e-0450.00Precursor of CEP3 OS=Arabidopsis thaliana OX=3702 GN=CEP3 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A0A0KLC0|A0A0A0KLC0_CUCSA7.5e-42100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490800 PE=4 SV=1[more]
tr|A0A2N9HI50|A0A2N9HI50_FAGSY6.6e-0652.54Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39764 PE=4 SV=1[more]
tr|A0A1R3GF58|A0A1R3GF58_COCAP1.9e-0549.12Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_26342 PE=4 ... [more]
tr|A0A2N9H8T0|A0A2N9H8T0_FAGSY2.5e-0550.85Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35942 PE=4 SV=1[more]
tr|A0A0L9UQM6|A0A0L9UQM6_PHAAN2.5e-0547.22Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan06g034400 PE... [more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0048364root development
Vocabulary: INTERPRO
TermDefinition
IPR033250CEP
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048364 root development
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G027480.1CsGy6G027480.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..89
NoneNo IPR availablePANTHERPTHR33348:SF6SUBFAMILY NOT NAMEDcoord: 34..89
IPR033250C-terminally encoded peptidePANTHERPTHR33348FAMILY NOT NAMEDcoord: 34..89

The following gene(s) are paralogous to this gene:

None