Carg05226 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05226
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Precursor of CEP3
Location	Cucurbita_argyrosperma_scaffold_010 : 582831 .. 583142 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTACCAACCAACCTAAGCCTTGCCTTTCTTTTCATTGCCCTTCTAATTTTCTCTCATTTTATAGATTCTGCCTCCAGCAGGCCACTCAAAACACACACAAATCACCAACTCTCTGCCAGGTCAGCAAAAGAGGCTCATTTCCAATTCCATGGCCAAAGTGTGGCGGAAGGAAAAGGAACAGATGGCGCTGTTTCTACTCCAAGCCCTCCCACCACAGCGGCGGGTTCGTCTCCGGGCCGGAAGATGGATGACTTCAGGCCAACCACCCCCGGCCATAGCCCAGGCGTTGGCCATTCCATTCAGAACTAA

mRNA sequence

ATGCTACCAACCAACCTAAGCCTTGCCTTTCTTTTCATTGCCCTTCTAATTTTCTCTCATTTTATAGATTCTGCCTCCAGCAGGCCACTCAAAACACACACAAATCACCAACTCTCTGCCAGGTCAGCAAAAGAGGCTCATTTCCAATTCCATGGCCAAAGTGTGGCGGAAGGAAAAGGAACAGATGGCGCTGTTTCTACTCCAAGCCCTCCCACCACAGCGGCGGGTTCGTCTCCGGGCCGGAAGATGGATGACTTCAGGCCAACCACCCCCGGCCATAGCCCAGGCGTTGGCCATTCCATTCAGAACTAA

Coding sequence (CDS)

ATGCTACCAACCAACCTAAGCCTTGCCTTTCTTTTCATTGCCCTTCTAATTTTCTCTCATTTTATAGATTCTGCCTCCAGCAGGCCACTCAAAACACACACAAATCACCAACTCTCTGCCAGGTCAGCAAAAGAGGCTCATTTCCAATTCCATGGCCAAAGTGTGGCGGAAGGAAAAGGAACAGATGGCGCTGTTTCTACTCCAAGCCCTCCCACCACAGCGGCGGGTTCGTCTCCGGGCCGGAAGATGGATGACTTCAGGCCAACCACCCCCGGCCATAGCCCAGGCGTTGGCCATTCCATTCAGAACTAA

Protein sequence

MLPTNLSLAFLFIALLIFSHFIDSASSRPLKTHTNHQLSARSAKEAHFQFHGQSVAEGKGTDGAVSTPSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN

Homology

[Close]

BLAST of Carg05226 vs. NCBI nr
Match: KGN48516.1 (hypothetical protein Csa_6G490800 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 2.0e-26
Identity = 72/107 (67.29%), Postives = 81/107 (75.70%), Query Frame = 0


Query: 1   MLPTNLSLAFLFIALLIFSHFIDSASSRPLKTHTNH-QLSARSAKEAHFQFHGQSVAEGK 60
           M PT LS AFLFI+LLI  H +D A SRPL THT H QLS    K  HFQ HGQ++ EGK
Sbjct: 5   MAPTKLSFAFLFISLLILCHLVDPAFSRPLTTHTIHQQLSDTLPKNPHFQLHGQTLHEGK 64

Query: 61  GT-DGAVST--PSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 104
            + D AVST  P+PP+ AA S+PGRKMDDFRPTTPGHSPGVGHSI+N
Sbjct: 65  ASNDDAVSTPNPNPPSAAASSTPGRKMDDFRPTTPGHSPGVGHSIEN 111

[Close]

BLAST of Carg05226 vs. NCBI nr
Match: XP_002307258.1 (precursor of CEP5 [Populus trichocarpa] >PNT36589.1 hypothetical protein POPTR_005G136800v3 [Populus trichocarpa])

HSP 1 Score: 59.7 bits (143), Expect = 6.8e-06
Identity = 41/106 (38.68%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 1   MLPTNLSLAFLFIALLIFSHFIDSASSRPLKTHTNHQLSARSAKEAHFQFHGQSVAEGKG 60
           M    L  AF+F+ +L FS  +     R LKT T+++   +   E + + H    ++   
Sbjct: 1   MAQMKLLCAFVFL-VLFFSQELKFIEGRHLKTRTSNKFLQKELVENNSKLHVNEKSDKTV 60

Query: 61  TDGAVSTPSPPTTAAGS---SPGRKMDDFRPTTPGHSPGVGHSIQN 104
               +S  SPPT        SP   +DDFRPTTPGHSPGVGHS+QN
Sbjct: 61  NATPMSPSSPPTPVVSEPHPSPPGHVDDFRPTTPGHSPGVGHSLQN 105

[Close]

BLAST of Carg05226 vs. NCBI nr
Match: OMO56709.1 (hypothetical protein CCACVL1_26342 [Corchorus capsularis])

HSP 1 Score: 57.8 bits (138), Expect = 2.6e-05
Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 45  EAHFQFHGQSVAEGKGTDGAVSTPSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 104
           E     HG ++      + A S PSPP+  A + P +  +DFRPT PGHSPGVGHSIQN
Sbjct: 216 EGKVNLHGVNIKAADTNNIAQSPPSPPSVKAQAPPPKDAEDFRPTAPGHSPGVGHSIQN 274

[Close]

BLAST of Carg05226 vs. NCBI nr
Match: PNT27021.1 (hypothetical protein POPTR_007G041700v3 [Populus trichocarpa])

HSP 1 Score: 57.8 bits (138), Expect = 2.6e-05
Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = 0


Query: 1   MLPTNLSLAFLFIALLIFSHFIDSASSRPLKTHTNH---QLSARSAKEAHFQFHGQSVAE 60
           M  +NL  AF+F+ +LIFSH +     R L   T +   Q   R   E++ + H     +
Sbjct: 1   MAQSNLLSAFVFL-VLIFSHELQFIEGRYLNLKTPNKFLQKEIRRLVESNSKLHVNDNLD 60

Query: 61  GKGTDGAVSTPSPPTTAAG----SSPGRKMDDFRPTTPGHSPGVGHSIQN 104
                  VS P+PP    G    S PG  +DDFRPT PGHSPGVGHS+QN
Sbjct: 61  KPVNATKVSPPAPPAPVVGEPHPSLPGH-VDDFRPTAPGHSPGVGHSLQN 108

[Close]

BLAST of Carg05226 vs. NCBI nr
Match: XP_021275344.1 (precursor of CEP5 [Herrania umbratica])

HSP 1 Score: 57.0 bits (136), Expect = 4.4e-05
Identity = 41/114 (35.96%), Postives = 58/114 (50.88%), Query Frame = 0


Query: 5   NLSLAFLFIALLIFSHFIDSASSRPL---------KTHTNHQLSARSAK---EAHFQFHG 64
           N  L+ L + LL+F   +   + RPL         K  T+ ++ A+  +   +     HG
Sbjct: 4   NKLLSILVLLLLVFFQEMQCIAGRPLILDQKPKFQKVQTHGRVLAKETEAILDGKVNLHG 63

Query: 65  QSVAEGKGTDGAVSTPSPPTTAAGSS---PGRKMDDFRPTTPGHSPGVGHSIQN 104
            ++     +    S PSPP    G+S   P + +DDFRPT PGHSPGVGHSIQN
Sbjct: 64  VNINAADAS--TQSPPSPPNVVVGASQAPPPKPVDDFRPTAPGHSPGVGHSIQN 115

[Close]

BLAST of Carg05226 vs. TAIR10
Match: AT2G23440.1 (unknown protein)

HSP 1 Score: 50.8 bits (120), Expect = 5.7e-07
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 63  GAVSTPSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 104
           G+V + SPPT    S P   +D FRPT PGHSPG+GHS+ N
Sbjct: 42  GSVLSSSPPTEPLESPPSHGVDTFRPTEPGHSPGIGHSVHN 82

[Close]

BLAST of Carg05226 vs. TAIR10
Match: AT5G66815.1 (unknown protein)

HSP 1 Score: 41.2 bits (95), Expect = 4.5e-04
Identity = 15/20 (75.00%), Postives = 19/20 (95.00%), Query Frame = 0


Query: 84  DDFRPTTPGHSPGVGHSIQN 104
           +DFRPTTPGHSPG+GHS+ +
Sbjct: 85  EDFRPTTPGHSPGIGHSLSH 104

[Close]

BLAST of Carg05226 vs. Swiss-Prot
Match: sp|O80460|PCEP3_ARATH (Precursor of CEP3 OS=Arabidopsis thaliana OX=3702 GN=CEP3 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.0e-05
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 63  GAVSTPSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 104
           G+V + SPPT    S P   +D FRPT PGHSPG+GHS+ N
Sbjct: 42  GSVLSSSPPTEPLESPPSHGVDTFRPTEPGHSPGIGHSVHN 82

[Close]

BLAST of Carg05226 vs. TrEMBL
Match: tr|A0A0A0KLC0|A0A0A0KLC0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490800 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.3e-26
Identity = 72/107 (67.29%), Postives = 81/107 (75.70%), Query Frame = 0


Query: 1   MLPTNLSLAFLFIALLIFSHFIDSASSRPLKTHTNH-QLSARSAKEAHFQFHGQSVAEGK 60
           M PT LS AFLFI+LLI  H +D A SRPL THT H QLS    K  HFQ HGQ++ EGK
Sbjct: 5   MAPTKLSFAFLFISLLILCHLVDPAFSRPLTTHTIHQQLSDTLPKNPHFQLHGQTLHEGK 64

Query: 61  GT-DGAVST--PSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 104
            + D AVST  P+PP+ AA S+PGRKMDDFRPTTPGHSPGVGHSI+N
Sbjct: 65  ASNDDAVSTPNPNPPSAAASSTPGRKMDDFRPTTPGHSPGVGHSIEN 111

[Close]

BLAST of Carg05226 vs. TrEMBL
Match: tr|B9H6F0|B9H6F0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G136800v3 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.5e-06
Identity = 41/106 (38.68%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 1   MLPTNLSLAFLFIALLIFSHFIDSASSRPLKTHTNHQLSARSAKEAHFQFHGQSVAEGKG 60
           M    L  AF+F+ +L FS  +     R LKT T+++   +   E + + H    ++   
Sbjct: 1   MAQMKLLCAFVFL-VLFFSQELKFIEGRHLKTRTSNKFLQKELVENNSKLHVNEKSDKTV 60

Query: 61  TDGAVSTPSPPTTAAGS---SPGRKMDDFRPTTPGHSPGVGHSIQN 104
               +S  SPPT        SP   +DDFRPTTPGHSPGVGHS+QN
Sbjct: 61  NATPMSPSSPPTPVVSEPHPSPPGHVDDFRPTTPGHSPGVGHSLQN 105

[Close]

BLAST of Carg05226 vs. TrEMBL
Match: tr|A0A1R3GF58|A0A1R3GF58_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_26342 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-05
Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 45  EAHFQFHGQSVAEGKGTDGAVSTPSPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 104
           E     HG ++      + A S PSPP+  A + P +  +DFRPT PGHSPGVGHSIQN
Sbjct: 216 EGKVNLHGVNIKAADTNNIAQSPPSPPSVKAQAPPPKDAEDFRPTAPGHSPGVGHSIQN 274

[Close]

BLAST of Carg05226 vs. TrEMBL
Match: tr|A0A2K1ZP22|A0A2K1ZP22_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G041700v3 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-05
Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = 0


Query: 1   MLPTNLSLAFLFIALLIFSHFIDSASSRPLKTHTNH---QLSARSAKEAHFQFHGQSVAE 60
           M  +NL  AF+F+ +LIFSH +     R L   T +   Q   R   E++ + H     +
Sbjct: 1   MAQSNLLSAFVFL-VLIFSHELQFIEGRYLNLKTPNKFLQKEIRRLVESNSKLHVNDNLD 60

Query: 61  GKGTDGAVSTPSPPTTAAG----SSPGRKMDDFRPTTPGHSPGVGHSIQN 104
                  VS P+PP    G    S PG  +DDFRPT PGHSPGVGHS+QN
Sbjct: 61  KPVNATKVSPPAPPAPVVGEPHPSLPGH-VDDFRPTAPGHSPGVGHSLQN 108

[Close]

BLAST of Carg05226 vs. TrEMBL
Match: tr|W9QWF5|W9QWF5_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_008267 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.9e-05
Identity = 43/110 (39.09%), Postives = 55/110 (50.00%), Query Frame = 0


Query: 1   MLPTNLSLAFLFIALLIFSHFIDSASSRPLKT-HTNHQLSAR-SAKEAHFQFHGQSVAEG 60
           M P    L   F+ +LIF+  I S   RPL    +N QL+ + + K     F+G  +AE 
Sbjct: 1   MAPNMSFLTSFFLLILIFTQGIPSIDGRPLNLGKSNDQLNDQTTTKIIVGHFNGDMLAER 60

Query: 61  KGTDGAVSTP-----SPPTTAAGSSPGRKMDDFRPTTPGHSPGVGHSIQN 104
              +   S P     S  + AA   PG    DFRPT PGHSPGVGHS+ N
Sbjct: 61  SNEESFASAPPSEGVSGASQAAPPPPGHDTSDFRPTAPGHSPGVGHSVHN 110

The following BLAST results are available for this feature:

BLAST of Carg05226 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48516.1	2.0e-26	67.29	hypothetical protein Csa_6G490800 [Cucumis sativus]	[more]
XP_002307258.1	6.8e-06	38.68	precursor of CEP5 [Populus trichocarpa] >PNT36589.1 hypothetical protein POPTR_0...	[more]
OMO56709.1	2.6e-05	49.15	hypothetical protein CCACVL1_26342 [Corchorus capsularis]	[more]
PNT27021.1	2.6e-05	40.91	hypothetical protein POPTR_007G041700v3 [Populus trichocarpa]	[more]
XP_021275344.1	4.4e-05	35.96	precursor of CEP5 [Herrania umbratica]	[more]

BLAST of Carg05226 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G23440.1	5.7e-07	56.10	unknown protein	[more]
AT5G66815.1	4.5e-04	75.00	unknown protein	[more]

BLAST of Carg05226 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O80460\|PCEP3_ARATH	1.0e-05	56.10	Precursor of CEP3 OS=Arabidopsis thaliana OX=3702 GN=CEP3 PE=1 SV=1	[more]

BLAST of Carg05226 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KLC0\|A0A0A0KLC0_CUCSA	1.3e-26	67.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490800 PE=4 SV=1	[more]
tr\|B9H6F0\|B9H6F0_POPTR	4.5e-06	38.68	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G136800v3 PE=...	[more]
tr\|A0A1R3GF58\|A0A1R3GF58_COCAP	1.7e-05	49.15	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_26342 PE=4 ...	[more]
tr\|A0A2K1ZP22\|A0A2K1ZP22_POPTR	1.7e-05	40.91	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G041700v3 PE=...	[more]
tr\|W9QWF5\|W9QWF5_9ROSA	2.9e-05	39.09	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_008267 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0048364	root development

Vocabulary: **INTERPRO**
Term	Definition
IPR033250	CEP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048364	root development
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05226-RA	Carg05226-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..103
None	No IPR available	PANTHER	PTHR33348:SF6	SUBFAMILY NOT NAMED	coord: 7..103
IPR033250	C-terminally encoded peptide	PANTHER	PTHR33348	FAMILY NOT NAMED	coord: 7..103

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05226	Cla001831	Watermelon (97103) v1	carwmB0805
Carg05226	Csa6G490800	Cucumber (Chinese Long) v2	carcuB0826
Carg05226	MELO3C007553	Melon (DHL92) v3.5.1	carmeB0807
Carg05226	ClCG01G016740	Watermelon (Charleston Gray)	carwcgB0778
Carg05226	CSPI06G28030	Wild cucumber (PI 183967)	carcpiB0846
Carg05226	Cucsa.102340	Cucumber (Gy14) v1	carcgyB0918
Carg05226	CmoCh07G007270	Cucurbita moschata (Rifu)	carcmoB1100
Carg05226	Lsi01G009900	Bottle gourd (USVL1VR-Ls)	carlsiB742
Carg05226	Cp4.1LG19g11270	Cucurbita pepo (Zucchini)	carcpeB1135
Carg05226	Cp4.1LG10g02540	Cucurbita pepo (Zucchini)	carcpeB1128
Carg05226	CsGy6G027480	Cucumber (Gy14) v2	carcgybB0799
Carg05226	MELO3C007553.2	Melon (DHL92) v3.6.1	carmedB0818
Carg05226	CsaV3_6G043170	Cucumber (Chinese Long) v3	carcucB0849
Carg05226	Cla97C01G015810	Watermelon (97103) v2	carwmbB0839
Carg05226	Bhi03G001449	Wax gourd	carwgoB0944

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg05226	Carg00848	Silver-seed gourd	carcarB428

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05226	Silver-seed gourd	carcarB225
Carg05226	Cucumber (Gy14) v2	carcgybB0792
Carg05226	Cucumber (Gy14) v2	carcgybB0800
Carg05226	Cucumber (Gy14) v1	carcgyB0920
Carg05226	Cucumber (Gy14) v1	carcgyB0924
Carg05226	Cucurbita maxima (Rimu)	carcmaB1115
Carg05226	Cucurbita maxima (Rimu)	carcmaB1118
Carg05226	Cucurbita maxima (Rimu)	carcmaB1125
Carg05226	Cucurbita maxima (Rimu)	carcmaB1130
Carg05226	Cucurbita moschata (Rifu)	carcmoB1089
Carg05226	Cucurbita moschata (Rifu)	carcmoB1095
Carg05226	Cucurbita pepo (Zucchini)	carcpeB1130
Carg05226	Cucurbita pepo (Zucchini)	carcpeB1136
Carg05226	Cucurbita pepo (Zucchini)	carcpeB1140
Carg05226	Wild cucumber (PI 183967)	carcpiB0849
Carg05226	Cucumber (Chinese Long) v2	carcuB0827
Carg05226	Cucumber (Chinese Long) v3	carcucB0842
Carg05226	Cucumber (Chinese Long) v3	carcucB0852
Carg05226	Bottle gourd (USVL1VR-Ls)	carlsiB738
Carg05226	Melon (DHL92) v3.5.1	carmeB0800
Carg05226	Melon (DHL92) v3.6.1	carmedB0812
Carg05226	Watermelon (Charleston Gray)	carwcgB0786
Carg05226	Watermelon (97103) v1	carwmB0812
Carg05226	Watermelon (97103) v2	carwmbB0846