Csa6G135990 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.GTCTTTCCCTTACTCTCTCACGTGCTCCGCCTTCTTCTTCCACTTCTTCATTTCACTCCGTCTCCTGTACCCTTTCTACAGCTCAGCCTCGCCGCCGCTTCTCTTCCGTTCAGTTCTACCGCCGCCTCTCTTTAGCCTAAACCTCCATCCTAGCAGGTTTGCGGCAATTTTCTACTCTTTATCTTTCTTCTCACTTGAGAAACTCGAATTAGGACTTTTCAAACTGTCGTGTTATAGCATCTTCCTTTTGATTTATTGCACATATCTTTTTATCTGTTCATCTCTCTGGTCTTTGCTGAAAACTGTCTTGTTTCCTCGACAATTAAACGTCCCAGCATTCCCTTTCTTCTTTATTTATGTACAATCAGGCGAAGTAATATATGGTATCGTCGAATTCTCTTTTAATCCTAGCTCATAGGAGTTATTTTGATTGATTGAACAACCTCGGCCATATTTATAATTGCAGATTATAGTTGTAAAGAAGACAATGAATCATTTTCTGATAATCGAAATGCTCTCCTTCAAATCAACAGACTACCGAAAATTTGCCACTAGTGGTAATTTGAATCTATTAGAAATAAGAGCCGCGGTATACTCTCTGCTCCATGTACTTGATTTAAAAAGTTATAGAAAATGTTTAGGGTAAAATAATCCTATTTTAAAAGGACGAGGGCATAAAGGAGACCTAAAATCTCTCCGCTTATAGCCAATTATATATATAGTATATAGTATATAACATAGGTTATCTTTTTCTATGCCTTCTATTCCTCATAAATGGCGGTGCAGTGTCCAATCGAACGAAAACTTCTCCTGGCATCAAAACTCAACCAAATATCTGAAAGGTCGGAAGTCGTGTTGTTGTTGAGTATATTTGGTTTTTGACTTCACAGTTGTAATGATGTTTTGATTGGATCATCAAATATTCAACTATGATTGATCAATTAATAATTATGATGATTCTGTAGTTTTAGATCATAGCAAGGAAGAAAGATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTTAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGAGTGGAGAAGGCTCTCCAATATTCATACAGGGATCGTCGGAACAAGAAGCGGGACATGCGCTCCCTTTGGATACAACGCATCAACGCTGGCACACGCCTTCATGGAGTATGGCTATTTCCTTTGAATCTTCCTTATTAGACTACCACAATTATTTGTGACCACAATACATCATTTTGTCTCTGTAGAATTATTTTTTGTTTTGAATTTCTTAATTTGGTTTAGTTCTTCCTTTTATTTCTTGTTTTATTTTGTTTTCCTGAAAAAATACTCTAAAACGGGGAAAAAAAGAAGACAAATAGGATCAGGGATGGGGAGTGGGATTTCAACTATTTTCTGTGTTTGTTCATAATTTTGATTATAGTGAATAGGATAGAATGTTGAGGAACCTGTGGGGAGGGTTTCATTTTGTTATGTGGGAGTTGATGGTGAAGCTAGTGGAATTGGAGGATTAAAAAAATGAGATCTTGAGATACACGACGAAGTGCCACTAGCTAAGTGGTTATGGTTGTTCTTTATGGAGCATGGTACAAAGTTATAGTGAGCAAAACTGGCCCACAACCTTCTAAGGTGGATGGCAAGAATTGATTCTCAGGGACCTAGTAAAAACTTCGGAAATCTAGTGCACATGGATTCCCGTTTTCCTCTTGCTGTATTAGATGCTTTGTTGGGAAAGATTTGAAAGTTACTTTTGGAAAAAAGGGGAGCCTGAGATTACGTAATGAGGTGCTACTTGCTAGATGGTTGTGGTTATTCTTCATGGAGCATGGTACAAAGTTATTGTGCCAAAGATGGCCCACACCCTTCTAATGTGTGTGGCAGGGATTGATTCTAACTTCTAAGGGACATGGTAAAAACCTTTGAAAATATATTGCTCATGGATTCCCTTTCCTCTCGGTATATTAGATACTTTGTTCGTGAAGATGAAAGTTTATTTTTGAGAAAATTGTTGAGTTTGTGACAATCCTTTTGTGAGTTTGTTTCCTCATTTATATCACTTGTCTCAAAAAAGCATCATTCTCTTTCTGATGCCTTGTCATTTCCTTGGGATTCAATCCTTCTCTTTCTCTTTATGATACAAAGGTTGTTGATTTGGTGGTGGTTCTTCGATTTTTTCCTTCTACAAGACCAGCACAAGTGTTTTTAGGGAGAGAATACTAGGTTGTGGTATCTGACTCTCTTGATCCTTCAAAAGGTTTCTCCGGTAAATCCCAATTTCACATTCTGTTTTTTTTTCTATATGTGAGTGTCTGGGCCAGCTTATGCGCACATCAACTAATCTCACGGGAGAAACCCGCCTGACCCTATAACATTTGAATGTCAAGGAAACCCGTAGGAAATTAATTCCTAGGTAGGTGACCACCATGGATTGAACCCATGACCTCTTAGTTAGATATTGAGACTATGTCTCCCTTTTTACCCCTAGGCCAACCCATTTTCACATTTTGTTTGTCTCTTCACTAACTTGGGTTGCATAAGTTTTCACTGCTATTTGGTTGAGTTAAATACCAGAGTAGGCTATTTCTTTTGGCAAGTTTTACATGGTAGGGTGAACACTCTAGATTGCTTTCCATGTCATTCTTCCTTTGTATTGCATTTGCAATGGCCCGTCATTTGCATGCAAAGGAGGACCTTCATCTCCGTTTGTGGGGTGTTGATCTAGAATTGGTAGTTGAGCTTGTTTGGCTGACAGCATGGATGGGAGATTGGTTCTCTATGATTGAGGGTGTGGTCTTGTTTTTGCCTAAGGTGGAAAGATCAAATGAGGAAGTGGTATGAAAACCTTAGAAATTTGAAACATTATGAACCCTTTGTTTATTTGAACCCCTAATAACAAATTCTTAAACCCTCAAATTGATTCAATCCAACTACAAGGAGAGTTAAAAAAGGTTACCTTGTGATCAAAGACCATGAGGTAAGGAGAACTACTCCCTTACTCAAGGTTTGAACACTCCATAGGTAAGTTGATCAATCTTACCTGAATGCTCAAGCATGCAACTCTAGATTAAGAATTGCAAAAAAGATGGTGATAAATCTTCCATCATTTGCACCAAGAAAAAATATCATTCCCAAATCTCAAATCCCAAATCCAAAAATTGTTTTGTACATCACAACTTAATGGTTAGGCTCTATAACCTCCCAAACCTTAATGTGTGCCACATCATAAACCCGAGTAAAATGGCAAAAGATACCCTGATTTATTATGTTCTAGAAAGGGTAAAATTGGAAAATAAGAAAATTACTTTAGAAGTATTAAATAAGTATAATTAATGATTTGATGTCTGGATGGTTAATATCAGAAAGTTGGAAGTGTGGGAGGAGGTTACTTTTAATGTCTCCTTGTGGATATTGTTTAATAAGCTTTTTTGTACTTATGACTTTGGTTTGATTTTGCTGTCTCTCACTTTTATGGTTCTTTCTAATATTTCTTTTCCTTTTTGCATGTCTTTGTATTTTATCTTATTTATTTATTTTGAAATGAAGCTCAGTTTCCTACCCCCAAAAGAATTTAGATCATTTTTGGCTTCTGATCTTTTGATATCCTCACATCAATTTTTTAATTTCCACCTTTGATATTCCCACATTCTTTAATTTTAGCTTTCATTTCTTCTACAATTCATCTCTGTAATTTTATGCCAACTTGACCTGCCTGGATAAGCTGCATACGTTTCACATGATTCAAGAATTTTAGCACTTTGAGTTTGAATGGTTTGCTTTTGCGATGGGAGGAGTAAAACCTGCTTTAGGTCAAATAATTACTGTATGATTGTGTTTAATTATTGTTGTAGGATTCTCATTTTCTACATCAGTGTGAAGTGTGAACTGCATCTTATTTCCAATCAACATTGAATTCTTTACCAAGTCACTAAAATATTTACATCAATACATTTGGGCAATTTGCCATGTGGAGAGATACTAACGTTTCTTTTATCTCCTTCCCTACCATTTTAGGTGAATTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTTCAACTAAATAGAAAAGTATTGTCAGAGATCTCAATGCACGAACCTTACAGTTTCAAGGCGCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAAGATGCTGCTTCCATGATTGTTTAA ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTTAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGAGTGGAGAAGGCTCTCCAATATTCATACAGGGATCGTCGGAACAAGAAGCGGGACATGCGCTCCCTTTGGATACAACGCATCAACGCTGGCACACGCCTTCATGGAGTGAATTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTTCAACTAAATAGAAAAGTATTGTCAGAGATCTCAATGCACGAACCTTACAGTTTCAAGGCGCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAAGATGCTGCTTCCATGATTGTTTAA ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTTAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGAGTGGAGAAGGCTCTCCAATATTCATACAGGGATCGTCGGAACAAGAAGCGGGACATGCGCTCCCTTTGGATACAACGCATCAACGCTGGCACACGCCTTCATGGAGTGAATTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTTCAACTAAATAGAAAAGTATTGTCAGAGATCTCAATGCACGAACCTTACAGTTTCAAGGCGCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAAGATGCTGCTTCCATGATTGTTTAA MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDAASMIV*
BLAST of Csa6G135990 vs. Swiss-Prot
Match: RL20_RHOCS (50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplT PE=3 SV=1) HSP 1 Score: 141.4 bits (355), Expect = 7.0e-33 Identity = 65/101 (64.36%), Postives = 80/101 (79.21%), Query Frame = 1
BLAST of Csa6G135990 vs. Swiss-Prot
Match: RL20_EHRCJ (50S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) GN=rplT PE=3 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 4.2e-30 Identity = 61/101 (60.40%), Postives = 79/101 (78.22%), Query Frame = 1
BLAST of Csa6G135990 vs. Swiss-Prot
Match: RL20_EHRCR (50S ribosomal protein L20 OS=Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arkansas) GN=rplT PE=3 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 2.1e-29 Identity = 61/101 (60.40%), Postives = 77/101 (76.24%), Query Frame = 1
BLAST of Csa6G135990 vs. Swiss-Prot
Match: RL20_WOLPP (50S ribosomal protein L20 OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=rplT PE=3 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 3.6e-29 Identity = 60/96 (62.50%), Postives = 72/96 (75.00%), Query Frame = 1
BLAST of Csa6G135990 vs. Swiss-Prot
Match: RL20_CHESB (50S ribosomal protein L20 OS=Chelativorans sp. (strain BNC1) GN=rplT PE=3 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 4.7e-29 Identity = 60/107 (56.07%), Postives = 81/107 (75.70%), Query Frame = 1
BLAST of Csa6G135990 vs. TrEMBL
Match: A0A0A0KD68_CUCSA (50S ribosomal protein L20 OS=Cucumis sativus GN=Csa_6G135990 PE=3 SV=1) HSP 1 Score: 254.6 bits (649), Expect = 6.3e-65 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1
BLAST of Csa6G135990 vs. TrEMBL
Match: I1JIN3_SOYBN (50S ribosomal protein L20 OS=Glycine max GN=GLYMA_02G2720001 PE=3 SV=1) HSP 1 Score: 237.3 bits (604), Expect = 1.0e-59 Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1
BLAST of Csa6G135990 vs. TrEMBL
Match: A0A0B2RZP3_GLYSO (50S ribosomal protein L20 OS=Glycine soja GN=glysoja_004125 PE=3 SV=1) HSP 1 Score: 237.3 bits (604), Expect = 1.0e-59 Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1
BLAST of Csa6G135990 vs. TrEMBL
Match: M5X2Y6_PRUPE (50S ribosomal protein L20 OS=Prunus persica GN=PRUPE_ppa013387mg PE=3 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 1.8e-59 Identity = 114/125 (91.20%), Postives = 119/125 (95.20%), Query Frame = 1
BLAST of Csa6G135990 vs. TrEMBL
Match: V7AXB9_PHAVU (50S ribosomal protein L20 OS=Phaseolus vulgaris GN=PHAVU_009G196700g PE=3 SV=1) HSP 1 Score: 236.1 bits (601), Expect = 2.3e-59 Identity = 113/120 (94.17%), Postives = 118/120 (98.33%), Query Frame = 1
BLAST of Csa6G135990 vs. TAIR10
Match: AT1G16740.1 (AT1G16740.1 Ribosomal protein L20) HSP 1 Score: 213.4 bits (542), Expect = 8.1e-56 Identity = 103/124 (83.06%), Postives = 111/124 (89.52%), Query Frame = 1
BLAST of Csa6G135990 vs. TAIR10
Match: ATCG00660.1 (ATCG00660.1 ribosomal protein L20) HSP 1 Score: 64.7 bits (156), Expect = 4.7e-11 Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = 1
BLAST of Csa6G135990 vs. NCBI nr
Match: gi|449444290|ref|XP_004139908.1| (PREDICTED: 50S ribosomal protein L20, chloroplastic [Cucumis sativus]) HSP 1 Score: 254.6 bits (649), Expect = 9.0e-65 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1
BLAST of Csa6G135990 vs. NCBI nr
Match: gi|659112666|ref|XP_008456292.1| (PREDICTED: 50S ribosomal protein L20, chloroplastic [Cucumis melo]) HSP 1 Score: 253.8 bits (647), Expect = 1.5e-64 Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 1
BLAST of Csa6G135990 vs. NCBI nr
Match: gi|720066636|ref|XP_010276581.1| (PREDICTED: 50S ribosomal protein L20, chloroplastic-like [Nelumbo nucifera]) HSP 1 Score: 239.6 bits (610), Expect = 3.0e-60 Identity = 114/124 (91.94%), Postives = 120/124 (96.77%), Query Frame = 1
BLAST of Csa6G135990 vs. NCBI nr
Match: gi|720041820|ref|XP_010269032.1| (PREDICTED: 50S ribosomal protein L20, chloroplastic-like isoform X2 [Nelumbo nucifera]) HSP 1 Score: 237.7 bits (605), Expect = 1.1e-59 Identity = 113/124 (91.13%), Postives = 119/124 (95.97%), Query Frame = 1
BLAST of Csa6G135990 vs. NCBI nr
Match: gi|571437875|ref|XP_006574365.1| (PREDICTED: uncharacterized protein LOC100527387 isoform X1 [Glycine max]) HSP 1 Score: 237.3 bits (604), Expect = 1.5e-59 Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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