CSPI06G11030 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G11030
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
Description50S ribosomal protein L20
LocationChr6 : 9654595 .. 9659296 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAATACCTAAATTCCTTCGTCTTTCCCTTACTCTCTCACGTGCTCCGCCTTCTTCTTCCACTTCTTCATTTCACTCCGTCTCCTGTACCCTTTCTACAGCTCAGCCTCGCCGCCGCTTCTCTTCCGTTCAGTTCTACCGCCGCCTCTCTTTCGCCTAAACCTCCATCCTAGCAGGTTTGCGGCAATTTTCTACTCTTTATCTTTCTTCTCACTTGAGAAACTCGAATTAGGACTTTTCAAACTGTCGTGTTATAGCATCTTCCTTTTGATTTATTGCACATATCTTTTTATCTGTTCATCTCTCTGGTCTTTGCTGAAAACTGTCTTGTTTCCTCGACAATTAAACGTCCCAGCATTCCCTTTCTTCTTTATTTATGTACAATCAGGCGAAGTAATATATGGTATCGTCGAATTCTCTTTTAATCCTAGCTCATAGGAGTTATTTTGATTGATTGAACAACCTCGGCCATATTTATAATTGTAGATTATAGTTGTAAAGAAGACAATGAACCATTTTCTGATAATCGAAATGCTCTCCTTCAAATCAACAGACTACCGAAAATTTGCCACTAGTGGTAATTTGAATCTATTAGAAATAAGAGCCGCGGTATACTCTCTGCTCCATGTACTTGATTTAAAAAGTTATAGAACATGTTTAGGGTAAAATAATCCTATTTTAAAAGGACGAGGGCATAAAGGAGACCTAAAATCTCTCCGCTTATAGCCAGTTATATATATAGTATATAGTATATAACATAGGTTATCTTTTTCTATGCCTTCTATTCCTCGTAAATGGCGGTGCAGTGTCCAATCGAACGAAAACTTCTCTTGGCATCAAAACTCAACCAAATATCTGAAAGGTCGGAAGTCGTGTTGTTGTTGAGTATATTTGGTTTTTGACTTCACAGTTGTAATGATGTTTTGATTGGATCATCAAATATTCAACTATGATTGATCAATTAATAATTATGATGATTCTGTAGTTTTAGATCATAGCAAGGAAGAAAGATGAACAAGGACAAGATATTTAAACTAGCCAAGGGTTTTAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGAGTGGAGAAGGCTCTCCAATATTCATACAGGGATCGTCGGAACAAGAAGCGGGACATGCGCTCCCTTTGGATACAACGCATCAACGCTGGCACACGCCTTCATGGAGTATGGCTATTTCCTTTGAATCTTCCTTATTAGACTACCACAATTATTTGTGACCACAATACATCATTTTGTCTCTGTAGAATTATTTTTTGTTTTGAATTTCTTAATTTGGTTTAGTTCTTCCTTTTATTTCTTGTTTTATTTTGTTTTCCTGAAAAAATACTCTAAAACGGGGAAAAAAAGAAGACAAATAGGATCAGGGATGGGGAGTGGGATTTCAACTATTTCCTGTGTTTGTTCATAATTTTGATTATAGTGAATAGGATAGAATGTTGAGGAACCTGTGGGGAGGGGTTCATGAGGCCAAGGGGAGGGTTTCATTTTGTTATGTGGGAGTTGATGGTGAAGCTAGTGGAATTGGAGGATTAAAAAAATGAGATCTTGAGATACACGACGAAGTGCCACTAGCTAAGTGGTTATGGTTGTTCTTTATGGAGCATGGTACAAAGTTATAGTGAGCAAAACTGGCCCGCAACCTTCTAAGGTGGATGGCAAGAATTGATTCTCAGGGACCTAGTAAAAACGTTCGGAAATCTAGTGCACATGGATTCCCGTTTTCCTCTTGCTGTATTAGATGCTTTGTTGGGAAAGATTTGAAAGTTACTTTTGGAAAAAAGGGGAGCCTGAGATTACGTAATGAGGTGCTACTTGCTAGATGGTTGTGGTTATTCTTCATGGAGCATGGTACAAAGTTATTGTGCCAAAGATGGCCCACACCCTTCTAATGTGTGTGGCAGGGATTGATTCTAACTTCTAAGGGACATGGTAAAAACCTTCGAAAATATATTGCTCATGGATTCCCTTTCCTCTCGGTATATTAGATACTTTGTTCGTGAAGATGAAAGTTTATTTTTGAGAAAATTGTTGAGTTTGTGACAATCCTTTTGTGAGTTTGTTTCCTCATTTATATCACTTGTCTCAAAAAAGCATCATTCTCTTTCTGATGCCTTGTCATTTCCTTGGGATTCAATCCTTCTCTTTCTCTTTATGATACAAAGGTTGTTGATTTGGTGGTGGTTCTTCGATTTTTTCCTTCTACAGGACCAGCACAAGTGTTTTTAGGGAGAGAATACTAGGTTGTGGTATCTGACTCTCTTGATCCTTCAAAAGGTTTCTCCGGTAAATCCCAATTTCACATTCTGTTTTTTTTTCTATATGTGAGTGTCTGGGCCAGCTTATGCGCACATCAACTAATCTCACGGGAGAACCCGTCTGACCCTACAACATTTGGGTGTCAAAGAAACCCGTAGGAAATTAATTCCTAGGTAGGTGACCACCATGGATTGAACCCATGACCTCTTAGTTAGATATTGAGACTATGTCCCTTTTTACCCCTAGGCCAACCCATTTTCACATTTTGTTTGTCTCTTCACTAACTTGGGTTGCATAAGTTTTCACTGCTATTTGGTTGAGTTAAATACCAGAGTAGGCTATTTCTTTTGGCAAGTTTTACATGGTAGGGTGAACACTCTAGATTGCTTTCCATGTCATTCTTCCTTTGTATTGCATTTGCAATGGCCCGTCATTTGCATGCAAAGGAGGACCTTCATCTCCGTTTGTGAGGTGTTGATCTAGAATTGGTAGTTGAGCTTGTTTGGCTTACAGCATGGATGGGAGATTGGTTCTCTATGACTGAGGGTGTGGTCTTGTTTTTGCCTAAGGTGGAAAGATCAAATGAGGAAGTGGTATGAAAACCTTAGAAATTTGAAACGTTATGAAGCCTTTGTTTATTTGAACCCCTAATAACAAATTCTTAAACCCTCAAATTGATTCAATCCAACTACAAGGAGAGTTAAAAAAGGTTACCTTGTGATCAAAGACCATGAGGTAAGGAGAACTACTCCCTTACTCAAGGTTTGAACACTCCATAGGTAAGTTGATCAATCGTACCTGAATGCTCAAGCATGCAACTCTAGATTAAGAATTGCAAAAAAGATGGTGATAAATCTTCCATCATTTGCACCAAGAAAAAATATCATTCCCAAATCTCAAATCCCAAATCCAAAAATTGTTTTGTACATCACAACTTAATGGTTAGGCTCTATAACCTCCCAAACCCTAATGTGTGCCACATCATAAACCCGAGTAAAATGGCAAAAGATACCCTGATTTATTATGTTCTAGAAAGGGTAAAATTGGAAAATAAGAAAATTACTTTAAAAGTATTAAATAAGTATAATTAATGATTTGATGTCTGGATGGTTCATATCAGAAAGTTGGAAGTGTGGGAGGAGGTTACTTTTAATGTCTCCTTGTGGATATTGTTTAATAAGCTTTTTTGTACTTATGACTTTGGTTTGATTTTGCCGTCTCTCACTTTTATGGTTCTTTCTAATATTTCTTTTCCTTTTTGCATGTCTTTGTATTTTATCTTATTTATTTATTTTGAAATGAAGCTCAGTTTCCTACCCCCAAAAAAATTTAGATCATTTTTGGCTTCTGATCTTTTGATATCCTCACATCAATTTTTTAATTTCCACCTTTGATATTCCCACATTCTTTAATTTTAGCTTTCATTTCTTCTACAATTCATCTCTGTAATTTTATGCCAACTTGACCTGCCTGGATAAGCTGCATACGTTTCACATGATTCAAGAATTTTAGCACTTTTAGTTTGAATGGTTTGCTTTTGCGATGGGAGGAGTAAAACCTGCTTTAGGTCAAATAATTACTGTATGATTGTGTGTAATTATTGTTGTAGGATTCTCATTTTCTACATCAGTGTGAAGTGTGAACTGCATCTTATTTCCAATCAATATTGAATTCTTTACCAAGTCACTAAAATATTTACATCAATACATTTGGGCAATTTGCCATGTGGAGAGATACTAACGTTTCTTTTATCTCCTTCCCTACCATTTTAGGTGAATTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTTCAACTAAATAGAAAAGTATTGTCAGAGATCTCAATGCACGAACCTTACAGTTTCAAGGCGCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAAGATGCTGCTTCCATGATTGTTTAATGGACCGTTTAAGAGTCCTCTGGACCTCCAGTTATATAGGAACCGACTCGGGGTGTTGTCTGGCTTATGATCATCGAGAGTTGATGCTTGTTTTTAGCATAGTTCTTTTTGTTACTATTATCGTATTAATTCTCCTAATCTTGTCAGACACTGAAATGCTTCTCCATTTGAAATGATAAATTTTCTATTGGATGTTTTTTGGGTTTTAGATCCACAACCAAGGACGATATTTTGTTGCCACAAGTTTCTGCAGGATGTCCGGTCAATTTTTGTCATAGGACAGGGATGGAATTAACTTGTCACCAATTTTTGCAAGACTTTCAGTGAAATGTTAATCATTGTAGCACCGATCCATTTTATTGGAAAGCTGAAAATTGTGTGCAGCATATGTATGTATAATACAAACAATCCAATAGTCAGATAACCATAATTCTAACCACTCTCTTTCAG

mRNA sequence

ATGAACAAGGACAAGATATTTAAACTAGCCAAGGGTTTTAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGAGTGGAGAAGGCTCTCCAATATTCATACAGGGATCGTCGGAACAAGAAGCGGGACATGCGCTCCCTTTGGATACAACGCATCAACGCTGGCACACGCCTTCATGGAGTGAATTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTTCAACTAAATAGAAAAGTATTGTCAGAGATCTCAATGCACGAACCTTACAGTTTCAAGGCGCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAAGATGCTGCTTCCATGATTGTTTAA

Coding sequence (CDS)

ATGAACAAGGACAAGATATTTAAACTAGCCAAGGGTTTTAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGAGTGGAGAAGGCTCTCCAATATTCATACAGGGATCGTCGGAACAAGAAGCGGGACATGCGCTCCCTTTGGATACAACGCATCAACGCTGGCACACGCCTTCATGGAGTGAATTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTTCAACTAAATAGAAAAGTATTGTCAGAGATCTCAATGCACGAACCTTACAGTTTCAAGGCGCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAAGATGCTGCTTCCATGATTGTTTAA
Homology
[Close]
BLAST of CSPI06G11030 vs. Swiss-Prot
Match: RL20_RHOCS (50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplT PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.5e-32
Identity = 65/101 (64.36%), Postives = 82/101 (81.19%), Query Frame = 1 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R LWIQRINAG RLHG+ 
Sbjct: 16  KVLKLAKGYRGRSSKCYRIALERVEKALRYAYRDRRNRKRDFRGLWIQRINAGARLHGLT 75

Query: 65  YGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNA 106
           Y  FMHGL +  ++++RKVLS+I+  EP SFKALV+ ++ A
Sbjct: 76  YSKFMHGLKRAGIEVDRKVLSDIAAREPESFKALVEQAQKA 116

[Close]
BLAST of CSPI06G11030 vs. Swiss-Prot
Match: RL20_EHRCJ (50S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) GN=rplT PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-29
Identity = 61/101 (60.40%), Postives = 81/101 (80.20%), Query Frame = 1 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ 
Sbjct: 16  KVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAARQHGLL 75

Query: 65  YGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNA 106
           Y +F+HGL   N+ LNRKVL++++++   +FK +VDI++ A
Sbjct: 76  YSDFIHGLSLANITLNRKVLADMAVNNQDNFKQIVDITKEA 116

[Close]
BLAST of CSPI06G11030 vs. Swiss-Prot
Match: RL20_EHRCR (50S ribosomal protein L20 OS=Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arkansas) GN=rplT PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-28
Identity = 61/101 (60.40%), Postives = 79/101 (78.22%), Query Frame = 1 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ 
Sbjct: 16  KVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQHGLL 75

Query: 65  YGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNA 106
           Y +F+HGL   NV LNRKVL++++++    FK +VD+ + A
Sbjct: 76  YSDFIHGLSLANVTLNRKVLADMAVNHKDHFKQIVDLIKEA 116

[Close]
BLAST of CSPI06G11030 vs. Swiss-Prot
Match: RL20_CHESB (50S ribosomal protein L20 OS=Chelativorans sp. (strain BNC1) GN=rplT PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.3e-28
Identity = 60/107 (56.07%), Postives = 83/107 (77.57%), Query Frame = 1 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ K AKGF GR KN IRIA++ VEK+LQY+YRDR+N+KR+ R+LWIQRINA TR HG+ 
Sbjct: 16  KVLKAAKGFYGRRKNTIRIAKQAVEKSLQYAYRDRKNRKRNFRALWIQRINAATREHGLT 75

Query: 65  YGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKN 112
           YG F+ GL K  ++++RKVL+++++HEP +F ALV  S+ +    KN
Sbjct: 76  YGRFIDGLNKAGIEIDRKVLADMAVHEPQAFAALVAKSKASLEYLKN 122

[Close]
BLAST of CSPI06G11030 vs. Swiss-Prot
Match: RL20_WOLPP (50S ribosomal protein L20 OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=rplT PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-28
Identity = 60/96 (62.50%), Postives = 74/96 (77.08%), Query Frame = 1 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGRAKNC RIA +RVEKALQY+YRDRRN+KRD R LWI RINA  R HG+ 
Sbjct: 16  KVLKLAKGYRGRAKNCYRIALQRVEKALQYAYRDRRNRKRDFRGLWIIRINAAAREHGLT 75

Query: 65  YGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD 101
           YG FMHGL    V LNRK+L+E++++    F  L++
Sbjct: 76  YGRFMHGLKLVGVDLNRKILAEMAVNHKDDFAKLIE 111

[Close]
BLAST of CSPI06G11030 vs. TrEMBL
Match: A0A0A0KD68_CUCSA (50S ribosomal protein L20 OS=Cucumis sativus GN=Csa_6G135990 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.8e-64
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 126
           ASMIV
Sbjct: 121 ASMIV 125

[Close]
BLAST of CSPI06G11030 vs. TrEMBL
Match: I1JIN3_SOYBN (50S ribosomal protein L20 OS=Glycine max GN=GLYMA_02G2720001 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.9e-59
Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTR+
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRI 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKEN+QLNRKVLSEISMHEPYSFK+LVDISRNAFPGNKNVV PP+K A
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSEISMHEPYSFKSLVDISRNAFPGNKNVVIPPRKVA 120

[Close]
BLAST of CSPI06G11030 vs. TrEMBL
Match: A0A0B2RZP3_GLYSO (50S ribosomal protein L20 OS=Glycine soja GN=glysoja_004125 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.9e-59
Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTR+
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRI 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKEN+QLNRKVLSEISMHEPYSFK+LVDISRNAFPGNKNVV PP+K A
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSEISMHEPYSFKSLVDISRNAFPGNKNVVIPPRKVA 120

[Close]
BLAST of CSPI06G11030 vs. TrEMBL
Match: M5X2Y6_PRUPE (50S ribosomal protein L20 OS=Prunus persica GN=PRUPE_ppa013387mg PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 5.2e-59
Identity = 114/125 (91.20%), Postives = 119/125 (95.20%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKRDMRSLWIQRINAGTR+
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRI 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKEN+QLNRKVLSE+SMHEPYSFKALVDISR AFPGNKNVV  PKK+ 
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRTAFPGNKNVVHAPKKEG 120

Query: 121 ASMIV 126
            SM+V
Sbjct: 121 LSMLV 125

[Close]
BLAST of CSPI06G11030 vs. TrEMBL
Match: V7AXB9_PHAVU (50S ribosomal protein L20 OS=Phaseolus vulgaris GN=PHAVU_009G196700g PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 8.8e-59
Identity = 113/120 (94.17%), Postives = 118/120 (98.33%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTR+
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRV 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKEN+QLNRKVLSE+SMHEPYSFK+LVDISRNAFPGNKNVV PP+K A
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVIPPRKVA 120

[Close]
BLAST of CSPI06G11030 vs. TAIR10
Match: AT1G16740.1 (AT1G16740.1 Ribosomal protein L20)

HSP 1 Score: 211.8 bits (538), Expect = 2.4e-55
Identity = 103/124 (83.06%), Postives = 113/124 (91.13%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR LWI+RINAG+R 
Sbjct: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGSRQ 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNF+HGLMKEN+QLNRKVLSE+SMHEPYSFKALVD+SR +FPGNKNVV   +K  
Sbjct: 61  HGVNYGNFIHGLMKENIQLNRKVLSELSMHEPYSFKALVDVSRKSFPGNKNVVQASRKVD 120

Query: 121 ASMI 125
            S I
Sbjct: 121 ISSI 124

[Close]
BLAST of CSPI06G11030 vs. TAIR10
Match: ATCG00660.1 (ATCG00660.1 ribosomal protein L20)

HSP 1 Score: 61.6 bits (148), Expect = 4.0e-10
Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = 1 

Query: 3   KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHG 62
           + K+   A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA     G
Sbjct: 14  RTKLRLFASSFRGAHSRLTRTMTQQRIRALVSAHRDRGKRKRDFRRLWITRINAVIHEMG 73

Query: 63  V--NYGNFMHGLMKENVQLNRKVLSEISM 90
           V  +Y  F+H L K+ + LNRK+L++I++
Sbjct: 74  VFYSYNEFIHNLYKKQLLLNRKILAQIAL 102

[Close]
BLAST of CSPI06G11030 vs. NCBI nr
Match: gi|449444290|ref|XP_004139908.1| (PREDICTED: 50S ribosomal protein L20, chloroplastic [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 2.6e-64
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 126
           ASMIV
Sbjct: 121 ASMIV 125

[Close]
BLAST of CSPI06G11030 vs. NCBI nr
Match: gi|659112666|ref|XP_008456292.1| (PREDICTED: 50S ribosomal protein L20, chloroplastic [Cucumis melo])

HSP 1 Score: 252.3 bits (643), Expect = 4.5e-64
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 126
           ASMIV
Sbjct: 121 ASMIV 125

[Close]
BLAST of CSPI06G11030 vs. NCBI nr
Match: gi|720066636|ref|XP_010276581.1| (PREDICTED: 50S ribosomal protein L20, chloroplastic-like [Nelumbo nucifera])

HSP 1 Score: 238.0 bits (606), Expect = 8.7e-60
Identity = 114/124 (91.94%), Postives = 120/124 (96.77%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWI+RINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIERINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKEN+QLNRKVLSE+SMHEPYSFKALVDISRNAFPGNKNVV PPKK+ 
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVIPPKKEG 120

Query: 121 ASMI 125
             ++
Sbjct: 121 LPIV 124

[Close]
BLAST of CSPI06G11030 vs. NCBI nr
Match: gi|720041820|ref|XP_010269032.1| (PREDICTED: 50S ribosomal protein L20, chloroplastic-like isoform X2 [Nelumbo nucifera])

HSP 1 Score: 236.1 bits (601), Expect = 3.3e-59
Identity = 113/124 (91.13%), Postives = 119/124 (95.97%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWI+RINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIERINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKEN+QLNRKVLSE+SMHEPYSFKALVDISRN FPGNK VV PPKK+ 
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNVFPGNKKVVIPPKKEG 120

Query: 121 ASMI 125
            S++
Sbjct: 121 LSIV 124

[Close]
BLAST of CSPI06G11030 vs. NCBI nr
Match: gi|571437875|ref|XP_006574365.1| (PREDICTED: uncharacterized protein LOC100527387 isoform X1 [Glycine max])

HSP 1 Score: 235.3 bits (599), Expect = 5.7e-59
Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTR+
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRI 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKEN+QLNRKVLSEISMHEPYSFK+LVDISRNAFPGNKNVV PP+K A
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSEISMHEPYSFKSLVDISRNAFPGNKNVVIPPRKVA 120

The following BLAST results are available for this feature:
BLAST of CSPI06G11030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL20_RHOCS4.5e-3264.3650S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN... [more]
RL20_EHRCJ2.7e-2960.4050S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) GN=rplT PE=3 SV=1[more]
RL20_EHRCR1.4e-2860.4050S ribosomal protein L20 OS=Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arka... [more]
RL20_CHESB2.3e-2856.0750S ribosomal protein L20 OS=Chelativorans sp. (strain BNC1) GN=rplT PE=3 SV=1[more]
RL20_WOLPP3.0e-2862.5050S ribosomal protein L20 OS=Wolbachia pipientis subsp. Culex pipiens (strain wP... [more]
BLAST of CSPI06G11030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KD68_CUCSA1.8e-64100.0050S ribosomal protein L20 OS=Cucumis sativus GN=Csa_6G135990 PE=3 SV=1[more]
I1JIN3_SOYBN3.9e-5995.0050S ribosomal protein L20 OS=Glycine max GN=GLYMA_02G2720001 PE=3 SV=1[more]
A0A0B2RZP3_GLYSO3.9e-5995.0050S ribosomal protein L20 OS=Glycine soja GN=glysoja_004125 PE=3 SV=1[more]
M5X2Y6_PRUPE5.2e-5991.2050S ribosomal protein L20 OS=Prunus persica GN=PRUPE_ppa013387mg PE=3 SV=1[more]
V7AXB9_PHAVU8.8e-5994.1750S ribosomal protein L20 OS=Phaseolus vulgaris GN=PHAVU_009G196700g PE=3 SV=1[more]
BLAST of CSPI06G11030 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G16740.12.4e-5583.06 Ribosomal protein L20[more]
ATCG00660.14.0e-1039.33ATCG00660.1 ribosomal protein L20[more]
BLAST of CSPI06G11030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449444290|ref|XP_004139908.1|2.6e-64100.00PREDICTED: 50S ribosomal protein L20, chloroplastic [Cucumis sativus][more]
gi|659112666|ref|XP_008456292.1|4.5e-6499.20PREDICTED: 50S ribosomal protein L20, chloroplastic [Cucumis melo][more]
gi|720066636|ref|XP_010276581.1|8.7e-6091.94PREDICTED: 50S ribosomal protein L20, chloroplastic-like [Nelumbo nucifera][more]
gi|720041820|ref|XP_010269032.1|3.3e-5991.13PREDICTED: 50S ribosomal protein L20, chloroplastic-like isoform X2 [Nelumbo nuc... [more]
gi|571437875|ref|XP_006574365.1|5.7e-5995.00PREDICTED: uncharacterized protein LOC100527387 isoform X1 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005813Ribosomal_L20
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0019843rRNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0000027 ribosomal large subunit assembly
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0005761 mitochondrial ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G11030.1CSPI06G11030.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005813Ribosomal protein L20PRINTSPR00062RIBOSOMALL20coord: 64..90
score: 9.4E-32coord: 1..30
score: 9.4E-32coord: 31..60
score: 9.4
IPR005813Ribosomal protein L20HAMAPMF_00382Ribosomal_L20coord: 1..104
score: 2
IPR005813Ribosomal protein L20PANTHERPTHR1098639S RIBOSOMAL PROTEIN L20coord: 1..124
score: 1.1
IPR005813Ribosomal protein L20PFAMPF00453Ribosomal_L20coord: 3..98
score: 8.6
IPR005813Ribosomal protein L20TIGRFAMsTIGR01032TIGR01032coord: 3..102
score: 1.5
IPR005813Ribosomal protein L20PROSITEPS00937RIBOSOMAL_L20coord: 43..59
scor
NoneNo IPR availablePRODOMPD002389coord: 9..61
score: 8.0
NoneNo IPR availableGENE3DG3DSA:1.10.1900.20coord: 44..105
score: 9.1
NoneNo IPR availableunknownSSF74731Ribosomal protein L20coord: 2..105
score: 8.76

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G11030Cla013452Watermelon (97103) v1cpiwmB544
CSPI06G11030Csa6G135990Cucumber (Chinese Long) v2cpicuB314
CSPI06G11030MELO3C019631Melon (DHL92) v3.5.1cpimeB420
CSPI06G11030ClCG02G018700Watermelon (Charleston Gray)cpiwcgB472
CSPI06G11030Lsi10G015130Bottle gourd (USVL1VR-Ls)cpilsiB409
CSPI06G11030MELO3C019631.2Melon (DHL92) v3.6.1cpimedB433
CSPI06G11030CsaV3_6G013470Cucumber (Chinese Long) v3cpicucB364
CSPI06G11030Cla97C02G044640Watermelon (97103) v2cpiwmbB465
CSPI06G11030Cucsa.118560Cucumber (Gy14) v1cgycpiB156
CSPI06G11030CmaCh02G006640Cucurbita maxima (Rimu)cmacpiB639
CSPI06G11030CmoCh20G003080Cucurbita moschata (Rifu)cmocpiB558
CSPI06G11030CmoCh02G006650Cucurbita moschata (Rifu)cmocpiB629
CSPI06G11030Cp4.1LG05g10230Cucurbita pepo (Zucchini)cpecpiB745
CSPI06G11030Cp4.1LG16g07060Cucurbita pepo (Zucchini)cpecpiB284
CSPI06G11030CsGy6G011190Cucumber (Gy14) v2cgybcpiB288
CSPI06G11030Carg11729Silver-seed gourdcarcpiB1099
CSPI06G11030Carg03420Silver-seed gourdcarcpiB0370
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G11030Cucumber (Chinese Long) v3cpicucB376
CSPI06G11030Watermelon (97103) v2cpiwmbB535
CSPI06G11030Wax gourdcpiwgoB567
CSPI06G11030Wax gourdcpiwgoB602
CSPI06G11030Wild cucumber (PI 183967)cpicpiB190
CSPI06G11030Cucumber (Gy14) v1cgycpiB356
CSPI06G11030Cucurbita maxima (Rimu)cmacpiB528
CSPI06G11030Cucurbita maxima (Rimu)cmacpiB570
CSPI06G11030Cucurbita moschata (Rifu)cmocpiB521
CSPI06G11030Cucumber (Chinese Long) v2cpicuB321
CSPI06G11030Melon (DHL92) v3.5.1cpimeB456
CSPI06G11030Watermelon (Charleston Gray)cpiwcgB439
CSPI06G11030Watermelon (97103) v1cpiwmB461
CSPI06G11030Cucurbita pepo (Zucchini)cpecpiB252
CSPI06G11030Bottle gourd (USVL1VR-Ls)cpilsiB429
CSPI06G11030Melon (DHL92) v3.6.1cpimedB449
CSPI06G11030Cucumber (Gy14) v2cgybcpiB329
CSPI06G11030Silver-seed gourdcarcpiB0566