CmoCh02G006650 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G006650
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	50S ribosomal protein L20
Location	Cmo_Chr02 : 4185192 .. 4186573 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGCTTCAGAGGCAGGGCTAAGAATTGCATAAGGATTGCTCGAGAGCGGGTGGAGAAGGCTCTCCAGTATTCCTACAGGGACCGTCGCAATAAGAAGAGAGACATGCGCTCCCTTTGGATACAACGCATCAATGCTGGCACACGCCTTTATGGGGTATGTGCATTTCCCTTGAATATTGTTCTTCATTAGACTACTGCAGTTGTTTTTGTTATTTCAATGAGTAACTGTGCCTCTTAAGAATTACTCTTCGTTTTGAATTTCTCAATTTGCTTTCGTTCTTCCTTTCTCTTTCTTGTTTTTTTTTTTTTTATGAAAATAATGATAATATATTATAATGAAAAATAATTTAGAAAAAAAGATTTGGATGGGGATCAGGGATCTCTGAACCCACAAAAAAGTTATTAGAGAAATTTCCCATCTAGAATGTGAATACTTTTACATTCTAAACCTCTGATATTCTCACGTAATTTTTTTAAAGAGAAACAATTTCATTGATGAATGTAATTTACAAAACAAAAGGGTAAGGTTAAAGACCCCAACCCAAGGGACAATAGACTTCTCCAATTAGATAAAGAGAGTCAAGGCTATATAGATGAAAAAACTCGGACAATTTACACCAGGATATCATGTAGCTATCAAAATGACATAGTCGAAATAAGTATCAAAGACTTCAGCTTTTCCCTTGATATTAAAGTTTATAATTTCCATCTTTGATATTCCCACATCCCATAATTTTAGCTTCTGACTTGGCCCTTCAATACTTTCTAGAATTTATTTCTGTAGTTTATGCCAATTTAACCTTCCTGGAATGCTGCTTTCATTTCACGTGGTTCGTGAATTTTACCTCTTTTTGTTTGAACAGCCTGAGTTTAAGAGAAATGAAAACTGCTTTCTGTCAAATAATTACTTTATACTTGTGTTCTGCACGATCAAGCTGCTTCTAGCTACTTTAATAAACCCTACTTGGGGAACACGTTAACTATTCATATTGTTCTAAAATTTTTGTAGGTTTCTTACTTTCTACATCGATGTCAATTGCCTCTTATTTCCAATCAATTGTGAATTCTTTAACATGTTATTCATATTTATCTTATATATATTTGGACAATCTCCCATGTCTACTGACGTTTCTTTTGACTCCCTGCCTACCGTACCAGGTAAATTATGGAAATTTCATGCATGGGCTGATGAAGGAGAACATTCAACTGAATAGAAAAGTATTATCAGAGCTTTCAATGCACGAACCTTACAGTTTCAAGTCCCTGGTAGACATCTCTCGAAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCAAAGAAGGATGGCATTTCCGTAGTTCTTTAA

mRNA sequence

ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGCTTCAGAGGCAGGGCTAAGAATTGCATAAGGATTGCTCGAGAGCGGGTGGAGAAGGCTCTCCAGTATTCCTACAGGGACCGTCGCAATAAGAAGAGAGACATGCGCTCCCTTTGGATACAACGCATCAATGCTGGCACACGCCTTTATGGGGTAAATTATGGAAATTTCATGCATGGGCTGATGAAGGAGAACATTCAACTGAATAGAAAAGTATTATCAGAGCTTTCAATGCACGAACCTTACAGTTTCAAGTCCCTGGTAGACATCTCTCGAAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCAAAGAAGGATGGCATTTCCGTAGTTCTTTAA

Coding sequence (CDS)

ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGCTTCAGAGGCAGGGCTAAGAATTGCATAAGGATTGCTCGAGAGCGGGTGGAGAAGGCTCTCCAGTATTCCTACAGGGACCGTCGCAATAAGAAGAGAGACATGCGCTCCCTTTGGATACAACGCATCAATGCTGGCACACGCCTTTATGGGGTAAATTATGGAAATTTCATGCATGGGCTGATGAAGGAGAACATTCAACTGAATAGAAAAGTATTATCAGAGCTTTCAATGCACGAACCTTACAGTTTCAAGTCCCTGGTAGACATCTCTCGAAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCAAAGAAGGATGGCATTTCCGTAGTTCTTTAA

Homology

[Close]

BLAST of CmoCh02G006650 vs. Swiss-Prot
Match: RL20_RHOCS (50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplT PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 6.5e-31
Identity = 63/101 (62.38%), Postives = 82/101 (81.19%), Query Frame = 1


Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVN 64
           K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R LWIQRINAG RL+G+ 
Sbjct: 16  KVLKLAKGYRGRSSKCYRIALERVEKALRYAYRDRRNRKRDFRGLWIQRINAGARLHGLT 75

Query: 65  YGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNA 106
           Y  FMHGL +  I+++RKVLS+++  EP SFK+LV+ ++ A
Sbjct: 76  YSKFMHGLKRAGIEVDRKVLSDIAAREPESFKALVEQAQKA 116

[Close]

BLAST of CmoCh02G006650 vs. Swiss-Prot
Match: RL20_EHRRW (50S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rplT PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.6e-29
Identity = 59/101 (58.42%), Postives = 81/101 (80.20%), Query Frame = 1


Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVN 64
           K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  R YG+ 
Sbjct: 16  KVIKLAKGYRGRSKNCYRVALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQYGLL 75

Query: 65  YGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNA 106
           Y +F++GL   NI LNRK+L+++++H   +FK +VD+++ A
Sbjct: 76  YSDFIYGLSLANITLNRKILADMAVHNKDNFKQIVDLTKEA 116

[Close]

BLAST of CmoCh02G006650 vs. Swiss-Prot
Match: RL20_EHRRG (50S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Gardel) GN=rplT PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.6e-29
Identity = 59/101 (58.42%), Postives = 81/101 (80.20%), Query Frame = 1


Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVN 64
           K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  R YG+ 
Sbjct: 16  KVIKLAKGYRGRSKNCYRVALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQYGLL 75

Query: 65  YGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNA 106
           Y +F++GL   NI LNRK+L+++++H   +FK +VD+++ A
Sbjct: 76  YSDFIYGLSLANITLNRKILADMAVHNKDNFKQIVDLTKEA 116

[Close]

BLAST of CmoCh02G006650 vs. Swiss-Prot
Match: RL20_EHRCJ (50S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) GN=rplT PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 6.1e-29
Identity = 61/101 (60.40%), Postives = 81/101 (80.20%), Query Frame = 1


Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVN 64
           K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R +G+ 
Sbjct: 16  KVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAARQHGLL 75

Query: 65  YGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNA 106
           Y +F+HGL   NI LNRKVL++++++   +FK +VDI++ A
Sbjct: 76  YSDFIHGLSLANITLNRKVLADMAVNNQDNFKQIVDITKEA 116

[Close]

BLAST of CmoCh02G006650 vs. Swiss-Prot
Match: RL20_ORITI (50S ribosomal protein L20 OS=Orientia tsutsugamushi (strain Ikeda) GN=rplT PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-28
Identity = 59/101 (58.42%), Postives = 80/101 (79.21%), Query Frame = 1


Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYGVN 64
           KI KLAKG+RGRAKNC RIA ++VEKALQYSYRDRRN+KR  R+LWIQRINA  R Y + 
Sbjct: 16  KILKLAKGYRGRAKNCFRIAIQKVEKALQYSYRDRRNRKRQFRALWIQRINAAVRQYDIT 75

Query: 65  YGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNA 106
           Y  F++GL + NI ++RKV+++L++H   SF  LV++++ +
Sbjct: 76  YSQFINGLKQANITVDRKVMADLAVHNADSFVHLVELTKKS 116

[Close]

BLAST of CmoCh02G006650 vs. TrEMBL
Match: A0A0A0KD68_CUCSA (50S ribosomal protein L20 OS=Cucumis sativus GN=Csa_6G135990 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.5e-61
Identity = 116/125 (92.80%), Postives = 123/125 (98.40%), Query Frame = 1


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120
           +GVNYGNFMHGLMKEN+QLNRKVLSE+SMHEPYSFK+LVDISRNAFPGNKNVVFPPKKD 
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ISVVL 126
            S+++
Sbjct: 121 ASMIV 125

[Close]

BLAST of CmoCh02G006650 vs. TrEMBL
Match: V7AXB9_PHAVU (50S ribosomal protein L20 OS=Phaseolus vulgaris GN=PHAVU_009G196700g PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.5e-58
Identity = 114/118 (96.61%), Postives = 117/118 (99.15%), Query Frame = 1


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTR+
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRV 60

Query: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKK 119
           +GVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVV PP+K
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVIPPRK 118

[Close]

BLAST of CmoCh02G006650 vs. TrEMBL
Match: A0A0B2RZP3_GLYSO (50S ribosomal protein L20 OS=Glycine soja GN=glysoja_004125 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.9e-58
Identity = 113/118 (95.76%), Postives = 117/118 (99.15%), Query Frame = 1


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTR+
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRI 60

Query: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKK 119
           +GVNYGNFMHGLMKENIQLNRKVLSE+SMHEPYSFKSLVDISRNAFPGNKNVV PP+K
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSEISMHEPYSFKSLVDISRNAFPGNKNVVIPPRK 118

[Close]

BLAST of CmoCh02G006650 vs. TrEMBL
Match: A0A0L9UCB1_PHAAN (50S ribosomal protein L20 OS=Phaseolus angularis GN=LR48_Vigan04g039000 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.9e-58
Identity = 113/118 (95.76%), Postives = 117/118 (99.15%), Query Frame = 1


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTR+
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRV 60

Query: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKK 119
           +GVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD+SRNAFPGNKNVV PP+K
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDVSRNAFPGNKNVVIPPRK 118

[Close]

BLAST of CmoCh02G006650 vs. TrEMBL
Match: A0A0S3RGQ4_PHAAN (50S ribosomal protein L20 OS=Vigna angularis var. angularis GN=Vigan.02G267000 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.9e-58
Identity = 113/118 (95.76%), Postives = 117/118 (99.15%), Query Frame = 1


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTR+
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRV 60

Query: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKK 119
           +GVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVD+SRNAFPGNKNVV PP+K
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDVSRNAFPGNKNVVIPPRK 118

[Close]

BLAST of CmoCh02G006650 vs. TAIR10
Match: AT1G16740.1 (AT1G16740.1 Ribosomal protein L20)

HSP 1 Score: 210.7 bits (535), Expect = 5.2e-55
Identity = 103/124 (83.06%), Postives = 114/124 (91.94%), Query Frame = 1


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR LWI+RINAG+R 
Sbjct: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGSRQ 60

Query: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120
           +GVNYGNF+HGLMKENIQLNRKVLSELSMHEPYSFK+LVD+SR +FPGNKNVV   +K  
Sbjct: 61  HGVNYGNFIHGLMKENIQLNRKVLSELSMHEPYSFKALVDVSRKSFPGNKNVVQASRKVD 120

Query: 121 ISVV 125
           IS +
Sbjct: 121 ISSI 124

[Close]

BLAST of CmoCh02G006650 vs. TAIR10
Match: ATCG00660.1 (ATCG00660.1 ribosomal protein L20)

HSP 1 Score: 61.6 bits (148), Expect = 3.9e-10
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 1


Query: 3   KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLYG 62
           + K+   A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA     G
Sbjct: 14  RTKLRLFASSFRGAHSRLTRTMTQQRIRALVSAHRDRGKRKRDFRRLWITRINAVIHEMG 73

Query: 63  V--NYGNFMHGLMKENIQLNRKVLSELSM 90
           V  +Y  F+H L K+ + LNRK+L+++++
Sbjct: 74  VFYSYNEFIHNLYKKQLLLNRKILAQIAL 102

[Close]

BLAST of CmoCh02G006650 vs. NCBI nr
Match: gi|659112666|ref|XP_008456292.1| (PREDICTED: 50S ribosomal protein L20, chloroplastic [Cucumis melo])

HSP 1 Score: 242.3 bits (617), Expect = 4.6e-61
Identity = 117/125 (93.60%), Postives = 123/125 (98.40%), Query Frame = 1


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120
           +GVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFK+LVDISRNAFPGNKNVVFPPKKD 
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ISVVL 126
            S+++
Sbjct: 121 ASMIV 125

[Close]

BLAST of CmoCh02G006650 vs. NCBI nr
Match: gi|449444290|ref|XP_004139908.1| (PREDICTED: 50S ribosomal protein L20, chloroplastic [Cucumis sativus])

HSP 1 Score: 241.5 bits (615), Expect = 7.8e-61
Identity = 116/125 (92.80%), Postives = 123/125 (98.40%), Query Frame = 1


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120
           +GVNYGNFMHGLMKEN+QLNRKVLSE+SMHEPYSFK+LVDISRNAFPGNKNVVFPPKKD 
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ISVVL 126
            S+++
Sbjct: 121 ASMIV 125

[Close]

BLAST of CmoCh02G006650 vs. NCBI nr
Match: gi|720066636|ref|XP_010276581.1| (PREDICTED: 50S ribosomal protein L20, chloroplastic-like [Nelumbo nucifera])

HSP 1 Score: 240.0 bits (611), Expect = 2.3e-60
Identity = 116/124 (93.55%), Postives = 122/124 (98.39%), Query Frame = 1


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWI+RINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIERINAGTRL 60

Query: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120
           +GVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFK+LVDISRNAFPGNKNVV PPKK+G
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVIPPKKEG 120

Query: 121 ISVV 125
           + +V
Sbjct: 121 LPIV 124

[Close]

BLAST of CmoCh02G006650 vs. NCBI nr
Match: gi|720041820|ref|XP_010269032.1| (PREDICTED: 50S ribosomal protein L20, chloroplastic-like isoform X2 [Nelumbo nucifera])

HSP 1 Score: 238.0 bits (606), Expect = 8.7e-60
Identity = 115/124 (92.74%), Postives = 121/124 (97.58%), Query Frame = 1


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWI+RINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIERINAGTRL 60

Query: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120
           +GVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFK+LVDISRN FPGNK VV PPKK+G
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNVFPGNKKVVIPPKKEG 120

Query: 121 ISVV 125
           +S+V
Sbjct: 121 LSIV 124

[Close]

BLAST of CmoCh02G006650 vs. NCBI nr
Match: gi|1009109344|ref|XP_015889722.1| (PREDICTED: 50S ribosomal protein L20 [Ziziphus jujuba])

HSP 1 Score: 237.3 bits (604), Expect = 1.5e-59
Identity = 118/125 (94.40%), Postives = 123/125 (98.40%), Query Frame = 1


Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  YGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVFPPKKDG 120
           +GVNYGNFMHGLMKENIQLNRKVLSELSMHEP+SFKSLVDISRNAFPGNK  VFPPKK+G
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPHSFKSLVDISRNAFPGNK-AVFPPKKEG 120

Query: 121 ISVVL 126
           IS+V+
Sbjct: 121 ISIVV 124

The following BLAST results are available for this feature:

BLAST of CmoCh02G006650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL20_RHOCS	6.5e-31	62.38	50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN...	[more]
RL20_EHRRW	3.6e-29	58.42	50S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rplT ...	[more]
RL20_EHRRG	3.6e-29	58.42	50S ribosomal protein L20 OS=Ehrlichia ruminantium (strain Gardel) GN=rplT PE=3 ...	[more]
RL20_EHRCJ	6.1e-29	60.40	50S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) GN=rplT PE=3 SV=1	[more]
RL20_ORITI	3.0e-28	58.42	50S ribosomal protein L20 OS=Orientia tsutsugamushi (strain Ikeda) GN=rplT PE=3 ...	[more]

BLAST of CmoCh02G006650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KD68_CUCSA	5.5e-61	92.80	50S ribosomal protein L20 OS=Cucumis sativus GN=Csa_6G135990 PE=3 SV=1	[more]
V7AXB9_PHAVU	1.5e-58	96.61	50S ribosomal protein L20 OS=Phaseolus vulgaris GN=PHAVU_009G196700g PE=3 SV=1	[more]
A0A0B2RZP3_GLYSO	1.9e-58	95.76	50S ribosomal protein L20 OS=Glycine soja GN=glysoja_004125 PE=3 SV=1	[more]
A0A0L9UCB1_PHAAN	1.9e-58	95.76	50S ribosomal protein L20 OS=Phaseolus angularis GN=LR48_Vigan04g039000 PE=3 SV=...	[more]
A0A0S3RGQ4_PHAAN	1.9e-58	95.76	50S ribosomal protein L20 OS=Vigna angularis var. angularis GN=Vigan.02G267000 P...	[more]

BLAST of CmoCh02G006650 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G16740.1	5.2e-55	83.06	Ribosomal protein L20	[more]
ATCG00660.1	3.9e-10	38.20	ATCG00660.1 ribosomal protein L20	[more]

BLAST of CmoCh02G006650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112666\|ref\|XP_008456292.1\|	4.6e-61	93.60	PREDICTED: 50S ribosomal protein L20, chloroplastic [Cucumis melo]	[more]
gi\|449444290\|ref\|XP_004139908.1\|	7.8e-61	92.80	PREDICTED: 50S ribosomal protein L20, chloroplastic [Cucumis sativus]	[more]
gi\|720066636\|ref\|XP_010276581.1\|	2.3e-60	93.55	PREDICTED: 50S ribosomal protein L20, chloroplastic-like [Nelumbo nucifera]	[more]
gi\|720041820\|ref\|XP_010269032.1\|	8.7e-60	92.74	PREDICTED: 50S ribosomal protein L20, chloroplastic-like isoform X2 [Nelumbo nuc...	[more]
gi\|1009109344\|ref\|XP_015889722.1\|	1.5e-59	94.40	PREDICTED: 50S ribosomal protein L20 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005813	Ribosomal_L20

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0000027	ribosomal large subunit assembly
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005761	mitochondrial ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G006650.1	CmoCh02G006650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005813	Ribosomal protein L20	PRINTS	PR00062	RIBOSOMALL20	coord: 64..90 score: 6.5E-32coord: 1..30 score: 6.5E-32coord: 31..60 score: 6.5
IPR005813	Ribosomal protein L20	HAMAP	MF_00382	Ribosomal_L20	coord: 1..104 score: 22
IPR005813	Ribosomal protein L20	PANTHER	PTHR10986	39S RIBOSOMAL PROTEIN L20	coord: 1..124 score: 7.0
IPR005813	Ribosomal protein L20	PFAM	PF00453	Ribosomal_L20	coord: 3..98 score: 7.4
IPR005813	Ribosomal protein L20	TIGRFAMs	TIGR01032	TIGR01032	coord: 3..102 score: 3.9
IPR005813	Ribosomal protein L20	PROSITE	PS00937	RIBOSOMAL_L20	coord: 43..59 scor
None	No IPR available	PRODOM	PD002389		coord: 9..61 score: 4.0
None	No IPR available	GENE3D	G3DSA:1.10.1900.20		coord: 44..105 score: 3.1
None	No IPR available	unknown	SSF74731	Ribosomal protein L20	coord: 2..105 score: 7.85

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G006650	Cucsa.118560	Cucumber (Gy14) v1	cgycmoB0302
CmoCh02G006650	CmaCh02G006640	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G006650	Cla013452	Watermelon (97103) v1	cmowmB577
CmoCh02G006650	Csa6G135990	Cucumber (Chinese Long) v2	cmocuB622
CmoCh02G006650	MELO3C019631	Melon (DHL92) v3.5.1	cmomeB539
CmoCh02G006650	ClCG02G018700	Watermelon (Charleston Gray)	cmowcgB525
CmoCh02G006650	CSPI06G11030	Wild cucumber (PI 183967)	cmocpiB629
CmoCh02G006650	Lsi10G015130	Bottle gourd (USVL1VR-Ls)	cmolsiB532
CmoCh02G006650	Cp4.1LG16g07060	Cucurbita pepo (Zucchini)	cmocpeB574
CmoCh02G006650	Cp4.1LG05g10230	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G006650	MELO3C019631.2	Melon (DHL92) v3.6.1	cmomedB603
CmoCh02G006650	CsaV3_6G013470	Cucumber (Chinese Long) v3	cmocucB0742
CmoCh02G006650	Cla97C02G044640	Watermelon (97103) v2	cmowmbB588
CmoCh02G006650	CsGy6G011190	Cucumber (Gy14) v2	cgybcmoB800
CmoCh02G006650	Carg03420	Silver-seed gourd	carcmoB0467
CmoCh02G006650	Carg11729	Silver-seed gourd	carcmoB1422

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh02G006650	CmoCh20G003080	Cucurbita moschata (Rifu)	cmocmoB403

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G006650	Cucumber (Gy14) v2	cgybcmoB215
CmoCh02G006650	Wax gourd	cmowgoB0746
CmoCh02G006650	Cucurbita maxima (Rimu)	cmacmoB553