ClCG02G018700 (gene) Watermelon (Charleston Gray)

Overview
NameClCG02G018700
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
Description50S ribosomal protein L20
LocationCG_Chr02 : 33441396 .. 33444959 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGTGAACTTTGGGGAAGAAGAAGGGAAACCTAAACTCCTTCCGCTCACTCGCACGTGCTCCACTTCACGCCGTCTCCTGCCCCCTTTCAACAGCTCCGTGTCGCCGCCGTCTCTCTCCCGTTCAATTCAGCCACCGCTGTCTGTCTTCCGCTCGCACTGCCGAAACCTCCCTCCGATCAGGTTTGCAGTTATCTGCCGTGTGCTGCCCTCTTCCTTTTGATTTGTTGCATATATTGACGCTCTGATCATCTGTATATCTCTTTGGTCTCTGCTGAAAAGTGTCTTTGTTTCACGTTCCAGCATTTTCCTTCTTCTTTATTTATATAGAATCAGTCAAAGTAATGTATGGTATTATCAAATTCTCTTTTAATCCCTAGCTTATAAGAGTCATTTTGATTGACGGAACAATCTCAACCATGTTTATAATTTTAGATTATAGTCGGAAAGTAGACACTGAGTTGTTTTTTGAAAATTGAAATCGTCTCATATTAACCGATCACCAACAATACGTCACCGATCATACTTTGAATTTACTTGAAATGAGAGACATCGATATACTCTGTGCTCCATGTAAATTTTAGAAGTTGTAGAAATGTTTAGGGGTACATATTTTAAAAGGTTGTGGGCATAAAGGAGACCTAAAAACTCTCCTCTTATAGCCAGGCCAGTTATATATATGGTATACAGTATGTAACATAGATTGTCTTTTCCTATGCCCTTCATTCCTCTTTAATGAAAGCATGGTATCCGGTCAAACAAAAACCTTGCTTGACATCAAAACTCAACCAAATACCAAAATCTGAAAAATTAAAAGTTGCGTTGTTTCTTATCGTCATTAATTGTGAAGTATATTTGGTTTTTGACTTTGTAGTTTTAACGATGTTGTTTTGATTGGATCATCACATATATGATTGATCAATTACTAATTCCGATGAGTATGTAGCTGTAGATCATAGCAAGGAAAAAAGATGAACAAGGACAAGATATTTAAGCTAGCAAAGGGTTTCAGAGGCAGGGCCAAGAATTGCATAAGAATTGCCAGAGAGCGGGTGGAGAAGGCTCTCCAATATTCATACCGGGACCGTCGTAATAAGAAGCGAGACATGCGCTCCCTTTGGATACAACGAATCAATGCTGGCACGCGCCTTCATGGGGTATGTCTATTTTATTTGAATGTTCCTCATTAGACTATCACATTGTTTATGTGATCATGATGTGTTGTTGTACCTTTTTAGAATTACTTCATAGACTACCACAATCTTAATTTGGTTTCGTTCTTCCTTTCTTTTCTTGTTTTATTTTAGTTTCCTGAAAAAATATACTAAAATAGAAAAAAAAAGAAAAATAGGATGGTGGATAGGGAGTGGGATTCCAACTACTTCTAGTCTTTGTTCAGAATTTCGATGATAGTGAGTAAGTTTCTTGAGAGAGGGTTGAGGAACTTCTTGTGGGGACGGGTCAATGAGGAGAAGGGGGAGGGTTTCATTTGGTTAAGCGAGATTTGGTGGTGAAGCCATTGGAATTAGGAGGATCAAAGACTGGGAGCCTGAAATTACGTAACGAGGTGCCATTAGCTAAGTGGTTGTGGTTGTTCTTCATGAAGCACGGTACAAAGTTATTATGGGAAAAAATGGCCCGCACCCTCCTAAGTGGGTGGCAAGCATTGTTTCTAAGGGACCTAGTAAAAATCTTTGGTAATCTATTGCATATGGATTCCCTTTTTTCTCTCGGTTCGTTAGATGCTTTGTTCGGGAAGATTTGAAAGTTTACTTTTGGGAAGATTGTTGAGTTTGTGACAACCTTTTTGTGAGTTGTTTCTTCGTTTATACCACAAATCTCAAAAGAAGCACCATTTGGTGGCTTCAATTTTGCCTTCTCCTTTCCTTGGGCTTCAGTCATCCTCTTTTGATTGAGAGGCTGTTGATGTGGTGGTTCTTCTTTGATTTTCTGCAAGACCAACATGTGTTTTTAGGGAGAAAGGATTCTAGGTTTTGGTCTTTTGATCCTTCGAAAGGCTTCTCCTGTAAATCCCCTTTTCACATTCTGTCTGTCTCCCACTCCCCCAGGCTGCCTCAGTTTTTGCCACTTTTTGGAAGAGTTAAATACCAAAGAAGGCCAAACTTTTTTGAATGGCAAGATTTACATGGTAGGGTGAATACTATAGATCATGTTCAACATCATTCTTCCTTCATGTTGCATTTGCAATGGTGCATCATTTGCAGGCAGCAAGAGGACCTTCACCACCTTCTGTGAGGTGGTGATCTAGAAAAGGTGGTTGAGCTTGTTTAGCTTACATTTGGCGTGGAGGAGAGATTGTTTCTTATGATTGAGGGTGTGGTCTTGTTTTTGCCTTTTTCGTGAGAAGGTTGAGGTATTATGACATGCTATTTTTTTGTTCTTTTTTTCTTTGAGGTATCTGGATTGAAAGCAATCATAATTTTTTGAGTGGTGGAATGATCGAGTAAGGAGGTGTGGGAGGGGGTTATGTTCAATTCCTCCTTGTGGACGCTGGTTAATAGGCTCTTTTATAATTTTGACCTTGGTTTGATTTTGTTGTCTCTCACTTTCTTGGTTCTTTCTGATGGTTTTTCTTGTAGGCCCTTGTGTCTATATATATATATATATATATTTTTTTTTTTTTTTTTTTTCTGCCCTTTGAGATGCTGATCCTTTGTTATTCTCACATCAAATTTCTAATTTCCACCTTTGATGTTCCCACATCCTTTAATTTTAACCTTTTAACTTGTCGTTTTCATTCTTTCTAGTTTCTGCAATGTCTGTAATTTTATGCCAACTTGACCTGCCTGGATAAGTTGCATACACTTCACGTGATTCATGAATTTTCGCACTTGTGTTTGAATGGTTTGGTTTTGCAAAGGGAGGAGTGAAAGCCGCTTTAGGTCAAAGAACTACTGTATGCTTGTGTTCTAGGTGTAGGATTCTCATTTTCTGCATCAGTGTGAATTGCCTCTTATTTCCAACTGATATTGAATTCTTTACCAAGTTACTCAAATATTTATCTTCTATGTATTTGGACAATTTGCCATGTAGAGATAGAGATACTGACGTTTCTTTTGTCTACTTCCCTACCATATAAGGTAAACTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTCCAACTAAATAGAAAAGTATTATCAGAGCTCTCAATGCACGAGCCTTACAGTTTCAAGGCCCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAGGATGCTGCCTCCATGATTGTTTAATGGATCGTTTACGAGTCCTCTAGATCTCCAGTTATATAGAAACAGACTAGGGATGTTTGTCTGGCTTATGATGAGAGTTGATGGTTGTTGTTGAGCGTAATTCTTTTCATTTCTATTGTTGCGTTAATTCTCCAAATGTTGTCAGACACTGAAAGGCTTGTCCATTTGAAATGATAAAAGTTTCTTGGATGCTTTGGTTTTAAATCCGCAATCAAGGATGTTATTTTGTTGGGACAAGTTTCTGCAGGACATTCAGTCAAATTTTGTCATGGG

mRNA sequence

GTGTGAACTTTGGGGAAGAAGAAGGGAAACCTAAACTCCTTCCGCTCACTCGCACGTGCTCCACTTCACGCCGTCTCCTGCCCCCTTTCAACAGCTCCGTGTCGCCGCCGTCTCTCTCCCGTTCAATTCAGCCACCGCTGTCTGTCTTCCGCTCGCACTGCCGAAACCTCCCTCCGATCAGATCATAGCAAGGAAAAAAGATGAACAAGGACAAGATATTTAAGCTAGCAAAGGGTTTCAGAGGCAGGGCCAAGAATTGCATAAGAATTGCCAGAGAGCGGGTGGAGAAGGCTCTCCAATATTCATACCGGGACCGTCGTAATAAGAAGCGAGACATGCGCTCCCTTTGGATACAACGAATCAATGCTGGCACGCGCCTTCATGGGGTAAACTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTCCAACTAAATAGAAAAGTATTATCAGAGCTCTCAATGCACGAGCCTTACAGTTTCAAGGCCCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAGGATGCTGCCTCCATGATTGTTTAATGGATCGTTTACGAGTCCTCTAGATCTCCAGTTATATAGAAACAGACTAGGGATGTTTGTCTGGCTTATGATGAGAGTTGATGGTTGTTGTTGAGCGTAATTCTTTTCATTTCTATTGTTGCGTTAATTCTCCAAATGTTGTCAGACACTGAAAGGCTTGTCCATTTGAAATGATAAAAGTTTCTTGGATGCTTTGGTTTTAAATCCGCAATCAAGGATGTTATTTTGTTGGGACAAGTTTCTGCAGGACATTCAGTCAAATTTTGTCATGGG

Coding sequence (CDS)

ATGAACAAGGACAAGATATTTAAGCTAGCAAAGGGTTTCAGAGGCAGGGCCAAGAATTGCATAAGAATTGCCAGAGAGCGGGTGGAGAAGGCTCTCCAATATTCATACCGGGACCGTCGTAATAAGAAGCGAGACATGCGCTCCCTTTGGATACAACGAATCAATGCTGGCACGCGCCTTCATGGGGTAAACTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTCCAACTAAATAGAAAAGTATTATCAGAGCTCTCAATGCACGAGCCTTACAGTTTCAAGGCCCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAGGATGCTGCCTCCATGATTGTTTAA

Protein sequence

MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDAASMIV
Homology
[Close]
BLAST of ClCG02G018700 vs. Swiss-Prot
Match: RL20_RHOCS (50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplT PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-32
Identity = 64/101 (63.37%), Postives = 80/101 (79.21%), Query Frame = 1 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R LWIQRINAG RLHG+ 
Sbjct: 16  KVLKLAKGYRGRSSKCYRIALERVEKALRYAYRDRRNRKRDFRGLWIQRINAGARLHGLT 75

Query: 65  YGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNA 106
           Y  FMHGL +  ++++RKVLS+++  EP SFKALV+ ++ A
Sbjct: 76  YSKFMHGLKRAGIEVDRKVLSDIAAREPESFKALVEQAQKA 116

[Close]
BLAST of ClCG02G018700 vs. Swiss-Prot
Match: RL20_EHRCJ (50S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) GN=rplT PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.2e-30
Identity = 61/101 (60.40%), Postives = 79/101 (78.22%), Query Frame = 1 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ 
Sbjct: 16  KVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAARQHGLL 75

Query: 65  YGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNA 106
           Y +F+HGL   N+ LNRKVL++++++   +FK +VDI++ A
Sbjct: 76  YSDFIHGLSLANITLNRKVLADMAVNNQDNFKQIVDITKEA 116

[Close]
BLAST of ClCG02G018700 vs. Swiss-Prot
Match: RL20_EHRCR (50S ribosomal protein L20 OS=Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arkansas) GN=rplT PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.6e-29
Identity = 61/101 (60.40%), Postives = 77/101 (76.24%), Query Frame = 1 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ 
Sbjct: 16  KVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQHGLL 75

Query: 65  YGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNA 106
           Y +F+HGL   NV LNRKVL++++++    FK +VD+ + A
Sbjct: 76  YSDFIHGLSLANVTLNRKVLADMAVNHKDHFKQIVDLIKEA 116

[Close]
BLAST of ClCG02G018700 vs. Swiss-Prot
Match: RL20_WOLPP (50S ribosomal protein L20 OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=rplT PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-29
Identity = 60/96 (62.50%), Postives = 72/96 (75.00%), Query Frame = 1 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGRAKNC RIA +RVEKALQY+YRDRRN+KRD R LWI RINA  R HG+ 
Sbjct: 16  KVLKLAKGYRGRAKNCYRIALQRVEKALQYAYRDRRNRKRDFRGLWIIRINAAAREHGLT 75

Query: 65  YGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD 101
           YG FMHGL    V LNRK+L+E++++    F  L++
Sbjct: 76  YGRFMHGLKLVGVDLNRKILAEMAVNHKDDFAKLIE 111

[Close]
BLAST of ClCG02G018700 vs. Swiss-Prot
Match: RL20_CHESB (50S ribosomal protein L20 OS=Chelativorans sp. (strain BNC1) GN=rplT PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.6e-29
Identity = 60/107 (56.07%), Postives = 81/107 (75.70%), Query Frame = 1 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ K AKGF GR KN IRIA++ VEK+LQY+YRDR+N+KR+ R+LWIQRINA TR HG+ 
Sbjct: 16  KVLKAAKGFYGRRKNTIRIAKQAVEKSLQYAYRDRKNRKRNFRALWIQRINAATREHGLT 75

Query: 65  YGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKN 112
           YG F+ GL K  ++++RKVL+++++HEP +F ALV  S+ +    KN
Sbjct: 76  YGRFIDGLNKAGIEIDRKVLADMAVHEPQAFAALVAKSKASLEYLKN 122

[Close]
BLAST of ClCG02G018700 vs. TrEMBL
Match: A0A0A0KD68_CUCSA (50S ribosomal protein L20 OS=Cucumis sativus GN=Csa_6G135990 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.1e-64
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 126
           ASMIV
Sbjct: 121 ASMIV 125

[Close]
BLAST of ClCG02G018700 vs. TrEMBL
Match: M5X2Y6_PRUPE (50S ribosomal protein L20 OS=Prunus persica GN=PRUPE_ppa013387mg PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.0e-59
Identity = 115/125 (92.00%), Postives = 119/125 (95.20%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKRDMRSLWIQRINAGTR+
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRI 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFKALVDISR AFPGNKNVV  PKK+ 
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRTAFPGNKNVVHAPKKEG 120

Query: 121 ASMIV 126
            SM+V
Sbjct: 121 LSMLV 125

[Close]
BLAST of ClCG02G018700 vs. TrEMBL
Match: V7AXB9_PHAVU (50S ribosomal protein L20 OS=Phaseolus vulgaris GN=PHAVU_009G196700g PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.3e-59
Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTR+
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRV 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFK+LVDISRNAFPGNKNVV PP+K A
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVIPPRKVA 120

[Close]
BLAST of ClCG02G018700 vs. TrEMBL
Match: A0A0L9UCB1_PHAAN (50S ribosomal protein L20 OS=Phaseolus angularis GN=LR48_Vigan04g039000 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.8e-59
Identity = 113/120 (94.17%), Postives = 118/120 (98.33%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTR+
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRV 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFK+LVD+SRNAFPGNKNVV PP+K A
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDVSRNAFPGNKNVVIPPRKVA 120

[Close]
BLAST of ClCG02G018700 vs. TrEMBL
Match: I1JIN3_SOYBN (50S ribosomal protein L20 OS=Glycine max GN=GLYMA_02G2720001 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.8e-59
Identity = 113/120 (94.17%), Postives = 118/120 (98.33%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTR+
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRI 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKEN+QLNRKVLSE+SMHEPYSFK+LVDISRNAFPGNKNVV PP+K A
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSEISMHEPYSFKSLVDISRNAFPGNKNVVIPPRKVA 120

[Close]
BLAST of ClCG02G018700 vs. TAIR10
Match: AT1G16740.1 (AT1G16740.1 Ribosomal protein L20)

HSP 1 Score: 214.2 bits (544), Expect = 4.7e-56
Identity = 104/124 (83.87%), Postives = 111/124 (89.52%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR LWI+RINAG+R 
Sbjct: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGSRQ 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNF+HGLMKEN+QLNRKVLSELSMHEPYSFKALVD+SR +FPGNKNVV   +K  
Sbjct: 61  HGVNYGNFIHGLMKENIQLNRKVLSELSMHEPYSFKALVDVSRKSFPGNKNVVQASRKVD 120

Query: 121 ASMI 125
            S I
Sbjct: 121 ISSI 124

[Close]
BLAST of ClCG02G018700 vs. TAIR10
Match: ATCG00660.1 (ATCG00660.1 ribosomal protein L20)

HSP 1 Score: 63.9 bits (154), Expect = 7.9e-11
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 1 

Query: 3   KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHG 62
           + K+   A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA     G
Sbjct: 14  RTKLRLFASSFRGAHSRLTRTMTQQRIRALVSAHRDRGKRKRDFRRLWITRINAVIHEMG 73

Query: 63  V--NYGNFMHGLMKENVQLNRKVLSELSM 90
           V  +Y  F+H L K+ + LNRK+L+++++
Sbjct: 74  VFYSYNEFIHNLYKKQLLLNRKILAQIAL 102

[Close]
BLAST of ClCG02G018700 vs. NCBI nr
Match: gi|659112666|ref|XP_008456292.1| (PREDICTED: 50S ribosomal protein L20, chloroplastic [Cucumis melo])

HSP 1 Score: 254.6 bits (649), Expect = 9.0e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 126
           ASMIV
Sbjct: 121 ASMIV 125

[Close]
BLAST of ClCG02G018700 vs. NCBI nr
Match: gi|449444290|ref|XP_004139908.1| (PREDICTED: 50S ribosomal protein L20, chloroplastic [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 1.5e-64
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 126
           ASMIV
Sbjct: 121 ASMIV 125

[Close]
BLAST of ClCG02G018700 vs. NCBI nr
Match: gi|720066636|ref|XP_010276581.1| (PREDICTED: 50S ribosomal protein L20, chloroplastic-like [Nelumbo nucifera])

HSP 1 Score: 240.4 bits (612), Expect = 1.7e-60
Identity = 115/124 (92.74%), Postives = 120/124 (96.77%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWI+RINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIERINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVV PPKK+ 
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVIPPKKEG 120

Query: 121 ASMI 125
             ++
Sbjct: 121 LPIV 124

[Close]
BLAST of ClCG02G018700 vs. NCBI nr
Match: gi|720041820|ref|XP_010269032.1| (PREDICTED: 50S ribosomal protein L20, chloroplastic-like isoform X2 [Nelumbo nucifera])

HSP 1 Score: 238.4 bits (607), Expect = 6.6e-60
Identity = 114/124 (91.94%), Postives = 119/124 (95.97%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWI+RINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIERINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFKALVDISRN FPGNK VV PPKK+ 
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNVFPGNKKVVIPPKKEG 120

Query: 121 ASMI 125
            S++
Sbjct: 121 LSIV 124

[Close]
BLAST of ClCG02G018700 vs. NCBI nr
Match: gi|1012202356|ref|XP_015973553.1| (PREDICTED: 50S ribosomal protein L20 [Arachis duranensis])

HSP 1 Score: 238.0 bits (606), Expect = 8.7e-60
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFKALVDIS+NAFPGNKNVV PP+K A
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISKNAFPGNKNVVIPPRKVA 120

The following BLAST results are available for this feature:
BLAST of ClCG02G018700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL20_RHOCS1.2e-3263.3750S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN... [more]
RL20_EHRCJ3.2e-3060.4050S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) GN=rplT PE=3 SV=1[more]
RL20_EHRCR1.6e-2960.4050S ribosomal protein L20 OS=Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arka... [more]
RL20_WOLPP2.7e-2962.5050S ribosomal protein L20 OS=Wolbachia pipientis subsp. Culex pipiens (strain wP... [more]
RL20_CHESB3.6e-2956.0750S ribosomal protein L20 OS=Chelativorans sp. (strain BNC1) GN=rplT PE=3 SV=1[more]
BLAST of ClCG02G018700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KD68_CUCSA1.1e-6499.2050S ribosomal protein L20 OS=Cucumis sativus GN=Csa_6G135990 PE=3 SV=1[more]
M5X2Y6_PRUPE1.0e-5992.0050S ribosomal protein L20 OS=Prunus persica GN=PRUPE_ppa013387mg PE=3 SV=1[more]
V7AXB9_PHAVU1.3e-5995.0050S ribosomal protein L20 OS=Phaseolus vulgaris GN=PHAVU_009G196700g PE=3 SV=1[more]
A0A0L9UCB1_PHAAN1.8e-5994.1750S ribosomal protein L20 OS=Phaseolus angularis GN=LR48_Vigan04g039000 PE=3 SV=... [more]
I1JIN3_SOYBN1.8e-5994.1750S ribosomal protein L20 OS=Glycine max GN=GLYMA_02G2720001 PE=3 SV=1[more]
BLAST of ClCG02G018700 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G16740.14.7e-5683.87 Ribosomal protein L20[more]
ATCG00660.17.9e-1138.20ATCG00660.1 ribosomal protein L20[more]
BLAST of ClCG02G018700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659112666|ref|XP_008456292.1|9.0e-65100.00PREDICTED: 50S ribosomal protein L20, chloroplastic [Cucumis melo][more]
gi|449444290|ref|XP_004139908.1|1.5e-6499.20PREDICTED: 50S ribosomal protein L20, chloroplastic [Cucumis sativus][more]
gi|720066636|ref|XP_010276581.1|1.7e-6092.74PREDICTED: 50S ribosomal protein L20, chloroplastic-like [Nelumbo nucifera][more]
gi|720041820|ref|XP_010269032.1|6.6e-6091.94PREDICTED: 50S ribosomal protein L20, chloroplastic-like isoform X2 [Nelumbo nuc... [more]
gi|1012202356|ref|XP_015973553.1|8.7e-6095.83PREDICTED: 50S ribosomal protein L20 [Arachis duranensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005813Ribosomal_L20
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0019843rRNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0000027 ribosomal large subunit assembly
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005761 mitochondrial ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G018700.1ClCG02G018700.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005813Ribosomal protein L20PRINTSPR00062RIBOSOMALL20coord: 1..30
score: 8.9E-32coord: 31..60
score: 8.9E-32coord: 64..90
score: 8.9
IPR005813Ribosomal protein L20HAMAPMF_00382Ribosomal_L20coord: 1..104
score: 22
IPR005813Ribosomal protein L20PANTHERPTHR1098639S RIBOSOMAL PROTEIN L20coord: 1..124
score: 7.4
IPR005813Ribosomal protein L20PFAMPF00453Ribosomal_L20coord: 3..98
score: 4.9
IPR005813Ribosomal protein L20TIGRFAMsTIGR01032TIGR01032coord: 3..102
score: 1.0
IPR005813Ribosomal protein L20PROSITEPS00937RIBOSOMAL_L20coord: 43..59
scor
NoneNo IPR availablePRODOMPD002389coord: 9..61
score: 8.0
NoneNo IPR availableGENE3DG3DSA:1.10.1900.20coord: 44..105
score: 7.3
NoneNo IPR availableunknownSSF74731Ribosomal protein L20coord: 2..105
score: 5.62

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG02G018700Csa6G135990Cucumber (Chinese Long) v2cuwcgB452
ClCG02G018700MELO3C019631Melon (DHL92) v3.5.1mewcgB107
ClCG02G018700Cla013452Watermelon (97103) v1wcgwmB197
ClCG02G018700Cla97C02G044640Watermelon (97103) v2wcgwmbB138
ClCG02G018700CSPI06G11030Wild cucumber (PI 183967)cpiwcgB472
ClCG02G018700Cucsa.118560Cucumber (Gy14) v1cgywcgB179
ClCG02G018700CmaCh02G006640Cucurbita maxima (Rimu)cmawcgB527
ClCG02G018700CmoCh20G003080Cucurbita moschata (Rifu)cmowcgB479
ClCG02G018700CmoCh02G006650Cucurbita moschata (Rifu)cmowcgB525
ClCG02G018700Lsi10G015130Bottle gourd (USVL1VR-Ls)lsiwcgB054
ClCG02G018700Cp4.1LG16g07060Cucurbita pepo (Zucchini)cpewcgB266
ClCG02G018700Cp4.1LG05g10230Cucurbita pepo (Zucchini)cpewcgB658
ClCG02G018700CsGy6G011190Cucumber (Gy14) v2cgybwcgB413
ClCG02G018700MELO3C019631.2Melon (DHL92) v3.6.1medwcgB087
ClCG02G018700Carg03420Silver-seed gourdcarwcgB0327
ClCG02G018700Carg11729Silver-seed gourdcarwcgB1027
ClCG02G018700CsaV3_6G013470Cucumber (Chinese Long) v3cucwcgB470
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G018700Watermelon (97103) v2wcgwmbB169
ClCG02G018700Wax gourdwcgwgoB278
ClCG02G018700Wax gourdwcgwgoB298
ClCG02G018700Watermelon (Charleston Gray)wcgwcgB014
ClCG02G018700Cucumber (Gy14) v1cgywcgB420
ClCG02G018700Cucurbita maxima (Rimu)cmawcgB458
ClCG02G018700Cucurbita maxima (Rimu)cmawcgB481
ClCG02G018700Cucurbita moschata (Rifu)cmowcgB457
ClCG02G018700Wild cucumber (PI 183967)cpiwcgB570
ClCG02G018700Cucumber (Chinese Long) v2cuwcgB542
ClCG02G018700Melon (DHL92) v3.5.1mewcgB203
ClCG02G018700Watermelon (97103) v1wcgwmB172
ClCG02G018700Cucurbita pepo (Zucchini)cpewcgB230
ClCG02G018700Bottle gourd (USVL1VR-Ls)lsiwcgB099
ClCG02G018700Cucumber (Gy14) v2cgybwcgB501
ClCG02G018700Melon (DHL92) v3.6.1medwcgB198
ClCG02G018700Silver-seed gourdcarwcgB0516
ClCG02G018700Cucumber (Chinese Long) v3cucwcgB566