Csa6G135990.2 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G135990.2
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
Description50S ribosomal protein L20; contains IPR005813 (Ribosomal protein L20)
LocationChr6 : 9509359 .. 9512982 (+)
Sequence length378
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTATACTCTCTGCTCCATGTACTTGATTTAAAAAGTTATAGAAAATGTTTAGGGTAAAATAATCCTATTTTAAAAGGACGAGGGCATAAAGGAGACCTAAAATCTCTCCGCTTATAGCCAATTATATATATAGTATATAGTATATAACATAGGTTATCTTTTTCTATGCCTTCTATTCCTCATAAATGGCGGTGCAGTGTCCAATCGAACGAAAACTTCTCCTGGCATCAAAACTCAACCAAATATCTGAAAGGTCGGAAGTCGTGTTGTTGTTGAGTATATTTGGTTTTTGACTTCACAGTTGTAATGATGTTTTGATTGGATCATCAAATATTCAACTATGATTGATCAATTAATAATTATGATGATTCTGTAGTTTTAGATCATAGCAAGGAAGAAAGATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTTAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGAGTGGAGAAGGCTCTCCAATATTCATACAGGGATCGTCGGAACAAGAAGCGGGACATGCGCTCCCTTTGGATACAACGCATCAACGCTGGCACACGCCTTCATGGAGTATGGCTATTTCCTTTGAATCTTCCTTATTAGACTACCACAATTATTTGTGACCACAATACATCATTTTGTCTCTGTAGAATTATTTTTTGTTTTGAATTTCTTAATTTGGTTTAGTTCTTCCTTTTATTTCTTGTTTTATTTTGTTTTCCTGAAAAAATACTCTAAAACGGGGAAAAAAAGAAGACAAATAGGATCAGGGATGGGGAGTGGGATTTCAACTATTTTCTGTGTTTGTTCATAATTTTGATTATAGTGAATAGGATAGAATGTTGAGGAACCTGTGGGGAGGGTTTCATTTTGTTATGTGGGAGTTGATGGTGAAGCTAGTGGAATTGGAGGATTAAAAAAATGAGATCTTGAGATACACGACGAAGTGCCACTAGCTAAGTGGTTATGGTTGTTCTTTATGGAGCATGGTACAAAGTTATAGTGAGCAAAACTGGCCCACAACCTTCTAAGGTGGATGGCAAGAATTGATTCTCAGGGACCTAGTAAAAACTTCGGAAATCTAGTGCACATGGATTCCCGTTTTCCTCTTGCTGTATTAGATGCTTTGTTGGGAAAGATTTGAAAGTTACTTTTGGAAAAAAGGGGAGCCTGAGATTACGTAATGAGGTGCTACTTGCTAGATGGTTGTGGTTATTCTTCATGGAGCATGGTACAAAGTTATTGTGCCAAAGATGGCCCACACCCTTCTAATGTGTGTGGCAGGGATTGATTCTAACTTCTAAGGGACATGGTAAAAACCTTTGAAAATATATTGCTCATGGATTCCCTTTCCTCTCGGTATATTAGATACTTTGTTCGTGAAGATGAAAGTTTATTTTTGAGAAAATTGTTGAGTTTGTGACAATCCTTTTGTGAGTTTGTTTCCTCATTTATATCACTTGTCTCAAAAAAGCATCATTCTCTTTCTGATGCCTTGTCATTTCCTTGGGATTCAATCCTTCTCTTTCTCTTTATGATACAAAGGTTGTTGATTTGGTGGTGGTTCTTCGATTTTTTCCTTCTACAAGACCAGCACAAGTGTTTTTAGGGAGAGAATACTAGGTTGTGGTATCTGACTCTCTTGATCCTTCAAAAGGTTTCTCCGGTAAATCCCAATTTCACATTCTGTTTTTTTTTCTATATGTGAGTGTCTGGGCCAGCTTATGCGCACATCAACTAATCTCACGGGAGAAACCCGCCTGACCCTATAACATTTGAATGTCAAGGAAACCCGTAGGAAATTAATTCCTAGGTAGGTGACCACCATGGATTGAACCCATGACCTCTTAGTTAGATATTGAGACTATGTCTCCCTTTTTACCCCTAGGCCAACCCATTTTCACATTTTGTTTGTCTCTTCACTAACTTGGGTTGCATAAGTTTTCACTGCTATTTGGTTGAGTTAAATACCAGAGTAGGCTATTTCTTTTGGCAAGTTTTACATGGTAGGGTGAACACTCTAGATTGCTTTCCATGTCATTCTTCCTTTGTATTGCATTTGCAATGGCCCGTCATTTGCATGCAAAGGAGGACCTTCATCTCCGTTTGTGGGGTGTTGATCTAGAATTGGTAGTTGAGCTTGTTTGGCTGACAGCATGGATGGGAGATTGGTTCTCTATGATTGAGGGTGTGGTCTTGTTTTTGCCTAAGGTGGAAAGATCAAATGAGGAAGTGGTATGAAAACCTTAGAAATTTGAAACATTATGAACCCTTTGTTTATTTGAACCCCTAATAACAAATTCTTAAACCCTCAAATTGATTCAATCCAACTACAAGGAGAGTTAAAAAAGGTTACCTTGTGATCAAAGACCATGAGGTAAGGAGAACTACTCCCTTACTCAAGGTTTGAACACTCCATAGGTAAGTTGATCAATCTTACCTGAATGCTCAAGCATGCAACTCTAGATTAAGAATTGCAAAAAAGATGGTGATAAATCTTCCATCATTTGCACCAAGAAAAAATATCATTCCCAAATCTCAAATCCCAAATCCAAAAATTGTTTTGTACATCACAACTTAATGGTTAGGCTCTATAACCTCCCAAACCTTAATGTGTGCCACATCATAAACCCGAGTAAAATGGCAAAAGATACCCTGATTTATTATGTTCTAGAAAGGGTAAAATTGGAAAATAAGAAAATTACTTTAGAAGTATTAAATAAGTATAATTAATGATTTGATGTCTGGATGGTTAATATCAGAAAGTTGGAAGTGTGGGAGGAGGTTACTTTTAATGTCTCCTTGTGGATATTGTTTAATAAGCTTTTTTGTACTTATGACTTTGGTTTGATTTTGCTGTCTCTCACTTTTATGGTTCTTTCTAATATTTCTTTTCCTTTTTGCATGTCTTTGTATTTTATCTTATTTATTTATTTTGAAATGAAGCTCAGTTTCCTACCCCCAAAAGAATTTAGATCATTTTTGGCTTCTGATCTTTTGATATCCTCACATCAATTTTTTAATTTCCACCTTTGATATTCCCACATTCTTTAATTTTAGCTTTCATTTCTTCTACAATTCATCTCTGTAATTTTATGCCAACTTGACCTGCCTGGATAAGCTGCATACGTTTCACATGATTCAAGAATTTTAGCACTTTGAGTTTGAATGGTTTGCTTTTGCGATGGGAGGAGTAAAACCTGCTTTAGGTCAAATAATTACTGTATGATTGTGTTTAATTATTGTTGTAGGATTCTCATTTTCTACATCAGTGTGAAGTGTGAACTGCATCTTATTTCCAATCAACATTGAATTCTTTACCAAGTCACTAAAATATTTACATCAATACATTTGGGCAATTTGCCATGTGGAGAGATACTAACGTTTCTTTTATCTCCTTCCCTACCATTTTAGGTGAATTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTTCAACTAAATAGAAAAGTATTGTCAGAGATCTCAATGCACGAACCTTACAGTTTCAAGGCGCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAAGATGCTGCTTCCATGATTGTTTAA

mRNA sequence

ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTTAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGAGTGGAGAAGGCTCTCCAATATTCATACAGGGATCGTCGGAACAAGAAGCGGGACATGCGCTCCCTTTGGATACAACGCATCAACGCTGGCACACGCCTTCATGGAGTGAATTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTTCAACTAAATAGAAAAGTATTGTCAGAGATCTCAATGCACGAACCTTACAGTTTCAAGGCGCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAAGATGCTGCTTCCATGATTGTTTAA

Coding sequence (CDS)

ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTTAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGAGTGGAGAAGGCTCTCCAATATTCATACAGGGATCGTCGGAACAAGAAGCGGGACATGCGCTCCCTTTGGATACAACGCATCAACGCTGGCACACGCCTTCATGGAGTGAATTATGGCAATTTTATGCATGGGCTGATGAAGGAGAACGTTCAACTAAATAGAAAAGTATTGTCAGAGATCTCAATGCACGAACCTTACAGTTTCAAGGCGCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCCAAGAAAGATGCTGCTTCCATGATTGTTTAA

Protein sequence

MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDAASMIV*
Homology
[Close]
BLAST of Csa6G135990.2 vs. Swiss-Prot
Match: RL20_RHOCS (50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplT PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 7.0e-33
Identity = 65/101 (64.36%), Postives = 80/101 (79.21%), Query Frame = 1 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R LWIQRINAG RLHG+ 
Sbjct: 16  KVLKLAKGYRGRSSKCYRIALERVEKALRYAYRDRRNRKRDFRGLWIQRINAGARLHGLT 75

Query: 65  YGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNA 106
           Y  FMHGL +  ++++RKVLS+I+  EP SFKALV+ ++ A
Sbjct: 76  YSKFMHGLKRAGIEVDRKVLSDIAAREPESFKALVEQAQKA 116

[Close]
BLAST of Csa6G135990.2 vs. Swiss-Prot
Match: RL20_EHRCJ (50S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) GN=rplT PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.2e-30
Identity = 61/101 (60.40%), Postives = 79/101 (78.22%), Query Frame = 1 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ 
Sbjct: 16  KVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAARQHGLL 75

Query: 65  YGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNA 106
           Y +F+HGL   N+ LNRKVL++++++   +FK +VDI++ A
Sbjct: 76  YSDFIHGLSLANITLNRKVLADMAVNNQDNFKQIVDITKEA 116

[Close]
BLAST of Csa6G135990.2 vs. Swiss-Prot
Match: RL20_EHRCR (50S ribosomal protein L20 OS=Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arkansas) GN=rplT PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.1e-29
Identity = 61/101 (60.40%), Postives = 77/101 (76.24%), Query Frame = 1 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ 
Sbjct: 16  KVIKLAKGYRGRSKNCYRIALQRVEKALQYAYRDRRNRKRFFRSLWIMRINAAVRQHGLL 75

Query: 65  YGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNA 106
           Y +F+HGL   NV LNRKVL++++++    FK +VD+ + A
Sbjct: 76  YSDFIHGLSLANVTLNRKVLADMAVNHKDHFKQIVDLIKEA 116

[Close]
BLAST of Csa6G135990.2 vs. Swiss-Prot
Match: RL20_WOLPP (50S ribosomal protein L20 OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=rplT PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.6e-29
Identity = 60/96 (62.50%), Postives = 72/96 (75.00%), Query Frame = 1 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ KLAKG+RGRAKNC RIA +RVEKALQY+YRDRRN+KRD R LWI RINA  R HG+ 
Sbjct: 16  KVLKLAKGYRGRAKNCYRIALQRVEKALQYAYRDRRNRKRDFRGLWIIRINAAAREHGLT 75

Query: 65  YGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD 101
           YG FMHGL    V LNRK+L+E++++    F  L++
Sbjct: 76  YGRFMHGLKLVGVDLNRKILAEMAVNHKDDFAKLIE 111

[Close]
BLAST of Csa6G135990.2 vs. Swiss-Prot
Match: RL20_CHESB (50S ribosomal protein L20 OS=Chelativorans sp. (strain BNC1) GN=rplT PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.7e-29
Identity = 60/107 (56.07%), Postives = 81/107 (75.70%), Query Frame = 1 

Query: 5   KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVN 64
           K+ K AKGF GR KN IRIA++ VEK+LQY+YRDR+N+KR+ R+LWIQRINA TR HG+ 
Sbjct: 16  KVLKAAKGFYGRRKNTIRIAKQAVEKSLQYAYRDRKNRKRNFRALWIQRINAATREHGLT 75

Query: 65  YGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKN 112
           YG F+ GL K  ++++RKVL+++++HEP +F ALV  S+ +    KN
Sbjct: 76  YGRFIDGLNKAGIEIDRKVLADMAVHEPQAFAALVAKSKASLEYLKN 122

[Close]
BLAST of Csa6G135990.2 vs. TrEMBL
Match: A0A0A0KD68_CUCSA (50S ribosomal protein L20 OS=Cucumis sativus GN=Csa_6G135990 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 6.3e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 126
           ASMIV
Sbjct: 121 ASMIV 125

[Close]
BLAST of Csa6G135990.2 vs. TrEMBL
Match: I1JIN3_SOYBN (50S ribosomal protein L20 OS=Glycine max GN=GLYMA_02G2720001 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.0e-59
Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTR+
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRI 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKEN+QLNRKVLSEISMHEPYSFK+LVDISRNAFPGNKNVV PP+K A
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSEISMHEPYSFKSLVDISRNAFPGNKNVVIPPRKVA 120

[Close]
BLAST of Csa6G135990.2 vs. TrEMBL
Match: A0A0B2RZP3_GLYSO (50S ribosomal protein L20 OS=Glycine soja GN=glysoja_004125 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.0e-59
Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTR+
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRI 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKEN+QLNRKVLSEISMHEPYSFK+LVDISRNAFPGNKNVV PP+K A
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSEISMHEPYSFKSLVDISRNAFPGNKNVVIPPRKVA 120

[Close]
BLAST of Csa6G135990.2 vs. TrEMBL
Match: M5X2Y6_PRUPE (50S ribosomal protein L20 OS=Prunus persica GN=PRUPE_ppa013387mg PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.8e-59
Identity = 114/125 (91.20%), Postives = 119/125 (95.20%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRR KKRDMRSLWIQRINAGTR+
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIQRINAGTRI 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKEN+QLNRKVLSE+SMHEPYSFKALVDISR AFPGNKNVV  PKK+ 
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRTAFPGNKNVVHAPKKEG 120

Query: 121 ASMIV 126
            SM+V
Sbjct: 121 LSMLV 125

[Close]
BLAST of Csa6G135990.2 vs. TrEMBL
Match: V7AXB9_PHAVU (50S ribosomal protein L20 OS=Phaseolus vulgaris GN=PHAVU_009G196700g PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.3e-59
Identity = 113/120 (94.17%), Postives = 118/120 (98.33%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTR+
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRV 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKEN+QLNRKVLSE+SMHEPYSFK+LVDISRNAFPGNKNVV PP+K A
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNKNVVIPPRKVA 120

[Close]
BLAST of Csa6G135990.2 vs. TAIR10
Match: AT1G16740.1 (AT1G16740.1 Ribosomal protein L20)

HSP 1 Score: 213.4 bits (542), Expect = 8.1e-56
Identity = 103/124 (83.06%), Postives = 111/124 (89.52%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR LWI+RINAG+R 
Sbjct: 1   MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGSRQ 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNF+HGLMKEN+QLNRKVLSE+SMHEPYSFKALVD+SR +FPGNKNVV   +K  
Sbjct: 61  HGVNYGNFIHGLMKENIQLNRKVLSELSMHEPYSFKALVDVSRKSFPGNKNVVQASRKVD 120

Query: 121 ASMI 125
            S I
Sbjct: 121 ISSI 124

[Close]
BLAST of Csa6G135990.2 vs. TAIR10
Match: ATCG00660.1 (ATCG00660.1 ribosomal protein L20)

HSP 1 Score: 64.7 bits (156), Expect = 4.7e-11
Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = 1 

Query: 3   KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHG 62
           + K+   A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA     G
Sbjct: 14  RTKLRLFASSFRGAHSRLTRTMTQQRIRALVSAHRDRGKRKRDFRRLWITRINAVIHEMG 73

Query: 63  V--NYGNFMHGLMKENVQLNRKVLSEISM 90
           V  +Y  F+H L K+ + LNRK+L++I++
Sbjct: 74  VFYSYNEFIHNLYKKQLLLNRKILAQIAL 102

[Close]
BLAST of Csa6G135990.2 vs. NCBI nr
Match: gi|449444290|ref|XP_004139908.1| (PREDICTED: 50S ribosomal protein L20, chloroplastic [Cucumis sativus])

HSP 1 Score: 254.6 bits (649), Expect = 9.0e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 126
           ASMIV
Sbjct: 121 ASMIV 125

[Close]
BLAST of Csa6G135990.2 vs. NCBI nr
Match: gi|659112666|ref|XP_008456292.1| (PREDICTED: 50S ribosomal protein L20, chloroplastic [Cucumis melo])

HSP 1 Score: 253.8 bits (647), Expect = 1.5e-64
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA
Sbjct: 61  HGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120

Query: 121 ASMIV 126
           ASMIV
Sbjct: 121 ASMIV 125

[Close]
BLAST of Csa6G135990.2 vs. NCBI nr
Match: gi|720066636|ref|XP_010276581.1| (PREDICTED: 50S ribosomal protein L20, chloroplastic-like [Nelumbo nucifera])

HSP 1 Score: 239.6 bits (610), Expect = 3.0e-60
Identity = 114/124 (91.94%), Postives = 120/124 (96.77%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWI+RINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIERINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKEN+QLNRKVLSE+SMHEPYSFKALVDISRNAFPGNKNVV PPKK+ 
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNAFPGNKNVVIPPKKEG 120

Query: 121 ASMI 125
             ++
Sbjct: 121 LPIV 124

[Close]
BLAST of Csa6G135990.2 vs. NCBI nr
Match: gi|720041820|ref|XP_010269032.1| (PREDICTED: 50S ribosomal protein L20, chloroplastic-like isoform X2 [Nelumbo nucifera])

HSP 1 Score: 237.7 bits (605), Expect = 1.1e-59
Identity = 113/124 (91.13%), Postives = 119/124 (95.97%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWI+RINAGTRL
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIERINAGTRL 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKEN+QLNRKVLSE+SMHEPYSFKALVDISRN FPGNK VV PPKK+ 
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSFKALVDISRNVFPGNKKVVIPPKKEG 120

Query: 121 ASMI 125
            S++
Sbjct: 121 LSIV 124

[Close]
BLAST of Csa6G135990.2 vs. NCBI nr
Match: gi|571437875|ref|XP_006574365.1| (PREDICTED: uncharacterized protein LOC100527387 isoform X1 [Glycine max])

HSP 1 Score: 237.3 bits (604), Expect = 1.5e-59
Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1 

Query: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL 60
           MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTR+
Sbjct: 1   MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRI 60

Query: 61  HGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNKNVVFPPKKDA 120
           HGVNYGNFMHGLMKEN+QLNRKVLSEISMHEPYSFK+LVDISRNAFPGNKNVV PP+K A
Sbjct: 61  HGVNYGNFMHGLMKENIQLNRKVLSEISMHEPYSFKSLVDISRNAFPGNKNVVIPPRKVA 120

The following BLAST results are available for this feature:
BLAST of Csa6G135990.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL20_RHOCS7.0e-3364.3650S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN... [more]
RL20_EHRCJ4.2e-3060.4050S ribosomal protein L20 OS=Ehrlichia canis (strain Jake) GN=rplT PE=3 SV=1[more]
RL20_EHRCR2.1e-2960.4050S ribosomal protein L20 OS=Ehrlichia chaffeensis (strain ATCC CRL-10679 / Arka... [more]
RL20_WOLPP3.6e-2962.5050S ribosomal protein L20 OS=Wolbachia pipientis subsp. Culex pipiens (strain wP... [more]
RL20_CHESB4.7e-2956.0750S ribosomal protein L20 OS=Chelativorans sp. (strain BNC1) GN=rplT PE=3 SV=1[more]
BLAST of Csa6G135990.2 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KD68_CUCSA6.3e-65100.0050S ribosomal protein L20 OS=Cucumis sativus GN=Csa_6G135990 PE=3 SV=1[more]
I1JIN3_SOYBN1.0e-5995.0050S ribosomal protein L20 OS=Glycine max GN=GLYMA_02G2720001 PE=3 SV=1[more]
A0A0B2RZP3_GLYSO1.0e-5995.0050S ribosomal protein L20 OS=Glycine soja GN=glysoja_004125 PE=3 SV=1[more]
M5X2Y6_PRUPE1.8e-5991.2050S ribosomal protein L20 OS=Prunus persica GN=PRUPE_ppa013387mg PE=3 SV=1[more]
V7AXB9_PHAVU2.3e-5994.1750S ribosomal protein L20 OS=Phaseolus vulgaris GN=PHAVU_009G196700g PE=3 SV=1[more]
BLAST of Csa6G135990.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G16740.18.1e-5683.06 Ribosomal protein L20[more]
ATCG00660.14.7e-1139.33ATCG00660.1 ribosomal protein L20[more]
BLAST of Csa6G135990.2 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449444290|ref|XP_004139908.1|9.0e-65100.00PREDICTED: 50S ribosomal protein L20, chloroplastic [Cucumis sativus][more]
gi|659112666|ref|XP_008456292.1|1.5e-6499.20PREDICTED: 50S ribosomal protein L20, chloroplastic [Cucumis melo][more]
gi|720066636|ref|XP_010276581.1|3.0e-6091.94PREDICTED: 50S ribosomal protein L20, chloroplastic-like [Nelumbo nucifera][more]
gi|720041820|ref|XP_010269032.1|1.1e-5991.13PREDICTED: 50S ribosomal protein L20, chloroplastic-like isoform X2 [Nelumbo nuc... [more]
gi|571437875|ref|XP_006574365.1|1.5e-5995.00PREDICTED: uncharacterized protein LOC100527387 isoform X1 [Glycine max][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR005813Ribosomal_L20
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0019843rRNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G135990Csa6G135990gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G135990.2Csa6G135990.2-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G135990.2.utr5p1Csa6G135990.2.utr5p1five_prime_UTR
Csa6G135990.2.utr5p2Csa6G135990.2.utr5p2five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G135990.2.cds2Csa6G135990.2.cds2CDS
Csa6G135990.2.cds3Csa6G135990.2.cds3CDS


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005813Ribosomal protein L20PRINTSPR00062RIBOSOMALL20coord: 64..90
score: 9.4E-32coord: 1..30
score: 9.4E-32coord: 31..60
score: 9.4
IPR005813Ribosomal protein L20HAMAPMF_00382Ribosomal_L20coord: 1..104
score: 2
IPR005813Ribosomal protein L20PANTHERPTHR1098639S RIBOSOMAL PROTEIN L20coord: 1..124
score: 1.1
IPR005813Ribosomal protein L20PFAMPF00453Ribosomal_L20coord: 3..98
score: 8.6
IPR005813Ribosomal protein L20TIGRFAMsTIGR01032TIGR01032coord: 3..102
score: 1.5
IPR005813Ribosomal protein L20PROSITEPS00937RIBOSOMAL_L20coord: 43..59
scor
NoneNo IPR availablePRODOMPD002389coord: 9..61
score: 8.0
NoneNo IPR availableGENE3DG3DSA:1.10.1900.20coord: 44..105
score: 9.1
NoneNo IPR availableunknownSSF74731Ribosomal protein L20coord: 2..105
score: 8.76