Csa6G052660 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G052660
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 4028926 .. 4029108 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGGCGGAAGGAGAGGGAGACTCTTGGGATTGGCTGTGGAGTCGCATTGTGCGCCGTAATTTCACCGGCGTGCGAGTTCGCTAGGGCTATACTCACAAAGTTACGCCGTCGCCCCTGCCCTAACATTTACAACGGTAGCACTGAGAATTGTGGGTCTCAAAAGGAGTGCTCCAGATAA

mRNA sequence

ATGGTGAGGCGGAAGGAGAGGGAGACTCTTGGGATTGGCTGTGGAGTCGCATTGTGCGCCGTAATTTCACCGGCGTGCGAGTTCGCTAGGGCTATACTCACAAAGTTACGCCGTCGCCCCTGCCCTAACATTTACAACGGTAGCACTGAGAATTGTGGGTCTCAAAAGGAGTGCTCCAGATAA

Coding sequence (CDS)

ATGGTGAGGCGGAAGGAGAGGGAGACTCTTGGGATTGGCTGTGGAGTCGCATTGTGCGCCGTAATTTCACCGGCGTGCGAGTTCGCTAGGGCTATACTCACAAAGTTACGCCGTCGCCCCTGCCCTAACATTTACAACGGTAGCACTGAGAATTGTGGGTCTCAAAAGGAGTGCTCCAGATAA

Protein sequence

MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQKECSR*
Homology
[Close]
BLAST of Csa6G052660 vs. TrEMBL
Match: A0A0A0KEA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052660 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.3e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQKECSR 60
          MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQKECSR
Sbjct: 1  MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQKECSR 60

[Close]
BLAST of Csa6G052660 vs. NCBI nr
Match: gi|700190887|gb|KGN46091.1| (hypothetical protein Csa_6G052660 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 4.7e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQKECSR 60
          MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQKECSR
Sbjct: 1  MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQKECSR 60

The following BLAST results are available for this feature:
BLAST of Csa6G052660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEA3_CUCSA3.3e-27100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052660 PE=4 SV=1[more]
BLAST of Csa6G052660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190887|gb|KGN46091.1|4.7e-27100.00hypothetical protein Csa_6G052660 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G052660.1Csa6G052660.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G052660Cla013645Watermelon (97103) v1cuwmB457
Csa6G052660ClCG08G008760Watermelon (Charleston Gray)cuwcgB497
Csa6G052660CSPI06G04430Wild cucumber (PI 183967)cpicuB314
Csa6G052660Cp4.1LG01g21490Cucurbita pepo (Zucchini)cpecuB459
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G052660Silver-seed gourdcarcuB0066
Csa6G052660Silver-seed gourdcarcuB0850
Csa6G052660Watermelon (97103) v2cuwmbB488
Csa6G052660Wax gourdcuwgoB588
Csa6G052660Cucumber (Gy14) v1cgycuB511
Csa6G052660Cucurbita maxima (Rimu)cmacuB308
Csa6G052660Cucurbita maxima (Rimu)cmacuB767
Csa6G052660Cucurbita moschata (Rifu)cmocuB297
Csa6G052660Cucurbita moschata (Rifu)cmocuB760
Csa6G052660Melon (DHL92) v3.5.1cumeB474
Csa6G052660Cucurbita pepo (Zucchini)cpecuB197
Csa6G052660Bottle gourd (USVL1VR-Ls)culsiB478
Csa6G052660Cucumber (Gy14) v2cgybcuB282
Csa6G052660Melon (DHL92) v3.6.1cumedB456