Csa6G052660.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G052660.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 4028926 .. 4029108 (+)
Sequence length183
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGGCGGAAGGAGAGGGAGACTCTTGGGATTGGCTGTGGAGTCGCATTGTGCGCCGTAATTTCACCGGCGTGCGAGTTCGCTAGGGCTATACTCACAAAGTTACGCCGTCGCCCCTGCCCTAACATTTACAACGGTAGCACTGAGAATTGTGGGTCTCAAAAGGAGTGCTCCAGATAA

mRNA sequence

ATGGTGAGGCGGAAGGAGAGGGAGACTCTTGGGATTGGCTGTGGAGTCGCATTGTGCGCCGTAATTTCACCGGCGTGCGAGTTCGCTAGGGCTATACTCACAAAGTTACGCCGTCGCCCCTGCCCTAACATTTACAACGGTAGCACTGAGAATTGTGGGTCTCAAAAGGAGTGCTCCAGATAA

Coding sequence (CDS)

ATGGTGAGGCGGAAGGAGAGGGAGACTCTTGGGATTGGCTGTGGAGTCGCATTGTGCGCCGTAATTTCACCGGCGTGCGAGTTCGCTAGGGCTATACTCACAAAGTTACGCCGTCGCCCCTGCCCTAACATTTACAACGGTAGCACTGAGAATTGTGGGTCTCAAAAGGAGTGCTCCAGATAA

Protein sequence

MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQKECSR*
Homology
[Close]
BLAST of Csa6G052660.1 vs. TrEMBL
Match: A0A0A0KEA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052660 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.3e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQKECSR 60
          MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQKECSR
Sbjct: 1  MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQKECSR 60

[Close]
BLAST of Csa6G052660.1 vs. NCBI nr
Match: gi|700190887|gb|KGN46091.1| (hypothetical protein Csa_6G052660 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 4.7e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQKECSR 60
          MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQKECSR
Sbjct: 1  MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQKECSR 60

The following BLAST results are available for this feature:
BLAST of Csa6G052660.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEA3_CUCSA3.3e-27100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052660 PE=4 SV=1[more]
BLAST of Csa6G052660.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190887|gb|KGN46091.1|4.7e-27100.00hypothetical protein Csa_6G052660 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G052660Csa6G052660gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G052660.1Csa6G052660.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G052660.1.cds1Csa6G052660.1.cds1CDS