Cp4.1LG01g21490 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g21490
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 18066393 .. 18066614 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAAGCGTAGGGAGAGGGAAACCTTAGGGATAGGGTGCGGAATCGCATTATGCGCCATGATTTCACCCGCTTGCGAGTTTGCTAAAGCCATACTCACGAACTTACGCCACCGCCCTAACCCTAACCCTAACCCTAACAGCAACAATCGCTGCAGGAGTCAGGAGAGAGGATCTGAAGGTGCAGATCGAAGCCGGCAGAGTCCTCGACGTCAGCGGTGA

mRNA sequence

ATGGTAAAGCGTAGGGAGAGGGAAACCTTAGGGATAGGGTGCGGAATCGCATTATGCGCCATGATTTCACCCGCTTGCGAGTTTGCTAAAGCCATACTCACGAACTTACGCCACCGCCCTAACCCTAACCCTAACCCTAACAGCAACAATCGCTGCAGGAGTCAGGAGAGAGGATCTGAAGGTGCAGATCGAAGCCGGCAGAGTCCTCGACGTCAGCGGTGA

Coding sequence (CDS)

ATGGTAAAGCGTAGGGAGAGGGAAACCTTAGGGATAGGGTGCGGAATCGCATTATGCGCCATGATTTCACCCGCTTGCGAGTTTGCTAAAGCCATACTCACGAACTTACGCCACCGCCCTAACCCTAACCCTAACCCTAACAGCAACAATCGCTGCAGGAGTCAGGAGAGAGGATCTGAAGGTGCAGATCGAAGCCGGCAGAGTCCTCGACGTCAGCGGTGA

Protein sequence

MVKRRERETLGIGCGIALCAMISPACEFAKAILTNLRHRPNPNPNPNSNNRCRSQERGSEGADRSRQSPRRQR
Homology
[Close]
BLAST of Cp4.1LG01g21490 vs. TrEMBL
Match: A0A0A0KEA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052660 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.7e-12
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 1 

Query: 1  MVKRRERETLGIGCGIALCAMISPACEFAKAILTNLRHRPNPNPNPNSNNRCRSQERGS 60
          MV+R+ERETLGIGCG+ALCA+ISPACEFA+AILT LR RP PN    S   C SQ+  S
Sbjct: 1  MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQKECS 59

[Close]
BLAST of Cp4.1LG01g21490 vs. NCBI nr
Match: gi|700190887|gb|KGN46091.1| (hypothetical protein Csa_6G052660 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-12
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 1 

Query: 1  MVKRRERETLGIGCGIALCAMISPACEFAKAILTNLRHRPNPNPNPNSNNRCRSQERGS 60
          MV+R+ERETLGIGCG+ALCA+ISPACEFA+AILT LR RP PN    S   C SQ+  S
Sbjct: 1  MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQKECS 59

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g21490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g21490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEA3_CUCSA2.7e-1267.80Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052660 PE=4 SV=1[more]
BLAST of Cp4.1LG01g21490 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g21490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190887|gb|KGN46091.1|3.9e-1267.80hypothetical protein Csa_6G052660 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g21490.1Cp4.1LG01g21490.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g21490Cla013645Watermelon (97103) v1cpewmB395
Cp4.1LG01g21490Csa6G052660Cucumber (Chinese Long) v2cpecuB459
Cp4.1LG01g21490ClCG08G008760Watermelon (Charleston Gray)cpewcgB417
Cp4.1LG01g21490CSPI06G04430Wild cucumber (PI 183967)cpecpiB460
Cp4.1LG01g21490CsaV3_6G004780Cucumber (Chinese Long) v3cpecucB0568
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g21490Silver-seed gourdcarcpeB0096
Cp4.1LG01g21490Silver-seed gourdcarcpeB1158
Cp4.1LG01g21490Wax gourdcpewgoB0526
Cp4.1LG01g21490Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG01g21490Cucumber (Gy14) v1cgycpeB0961
Cp4.1LG01g21490Cucurbita maxima (Rimu)cmacpeB318
Cp4.1LG01g21490Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g21490Cucurbita moschata (Rifu)cmocpeB280
Cp4.1LG01g21490Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g21490Bottle gourd (USVL1VR-Ls)cpelsiB382
Cp4.1LG01g21490Melon (DHL92) v3.5.1cpemeB396
Cp4.1LG01g21490Cucumber (Gy14) v2cgybcpeB797
Cp4.1LG01g21490Melon (DHL92) v3.6.1cpemedB460