Cp4.1LG01g21490.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g21490.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 18066393 .. 18066614 (-)
Sequence length222
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAAGCGTAGGGAGAGGGAAACCTTAGGGATAGGGTGCGGAATCGCATTATGCGCCATGATTTCACCCGCTTGCGAGTTTGCTAAAGCCATACTCACGAACTTACGCCACCGCCCTAACCCTAACCCTAACCCTAACAGCAACAATCGCTGCAGGAGTCAGGAGAGAGGATCTGAAGGTGCAGATCGAAGCCGGCAGAGTCCTCGACGTCAGCGGTGA

mRNA sequence

ATGGTAAAGCGTAGGGAGAGGGAAACCTTAGGGATAGGGTGCGGAATCGCATTATGCGCCATGATTTCACCCGCTTGCGAGTTTGCTAAAGCCATACTCACGAACTTACGCCACCGCCCTAACCCTAACCCTAACCCTAACAGCAACAATCGCTGCAGGAGTCAGGAGAGAGGATCTGAAGGTGCAGATCGAAGCCGGCAGAGTCCTCGACGTCAGCGGTGA

Coding sequence (CDS)

ATGGTAAAGCGTAGGGAGAGGGAAACCTTAGGGATAGGGTGCGGAATCGCATTATGCGCCATGATTTCACCCGCTTGCGAGTTTGCTAAAGCCATACTCACGAACTTACGCCACCGCCCTAACCCTAACCCTAACCCTAACAGCAACAATCGCTGCAGGAGTCAGGAGAGAGGATCTGAAGGTGCAGATCGAAGCCGGCAGAGTCCTCGACGTCAGCGGTGA

Protein sequence

MVKRRERETLGIGCGIALCAMISPACEFAKAILTNLRHRPNPNPNPNSNNRCRSQERGSEGADRSRQSPRRQR
Homology
[Close]
BLAST of Cp4.1LG01g21490.1 vs. TrEMBL
Match: A0A0A0KEA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052660 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.7e-12
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 1 

Query: 1  MVKRRERETLGIGCGIALCAMISPACEFAKAILTNLRHRPNPNPNPNSNNRCRSQERGS 60
          MV+R+ERETLGIGCG+ALCA+ISPACEFA+AILT LR RP PN    S   C SQ+  S
Sbjct: 1  MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQKECS 59

[Close]
BLAST of Cp4.1LG01g21490.1 vs. NCBI nr
Match: gi|700190887|gb|KGN46091.1| (hypothetical protein Csa_6G052660 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-12
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 1 

Query: 1  MVKRRERETLGIGCGIALCAMISPACEFAKAILTNLRHRPNPNPNPNSNNRCRSQERGS 60
          MV+R+ERETLGIGCG+ALCA+ISPACEFA+AILT LR RP PN    S   C SQ+  S
Sbjct: 1  MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQKECS 59

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g21490.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g21490.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEA3_CUCSA2.7e-1267.80Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052660 PE=4 SV=1[more]
BLAST of Cp4.1LG01g21490.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g21490.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190887|gb|KGN46091.1|3.9e-1267.80hypothetical protein Csa_6G052660 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG01g21490Cp4.1LG01g21490gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG01g21490.1:cds:001Cp4.1LG01g21490.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG01g21490.1Cp4.1LG01g21490.1-proteinpolypeptide