ClCG08G008760 (gene) Watermelon (Charleston Gray)

Overview
NameClCG08G008760
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr08 : 21301695 .. 21301883 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGGCGGAGGGAGAGGGAAGTTGTAGGGTTAGGGTGCGGAATCACGTTGTGCGCCGTAATTTCACCGGCGTGCGAATTCGCTAGGTCTATACTCACTAAATTACGCCGCCGCCCTAACAATAACACTGGCAGGACTCAGAATAGAGGATTGGAAGAGTGCTCGAGATCACTGGTGAGCGGCTGA

mRNA sequence

ATGGCGAGGCGGAGGGAGAGGGAAGTTGTAGGGTTAGGGTGCGGAATCACGTTGTGCGCCGTAATTTCACCGGCGTGCGAATTCGCTAGGTCTATACTCACTAAATTACGCCGCCGCCCTAACAATAACACTGGCAGGACTCAGAATAGAGGATTGGAAGAGTGCTCGAGATCACTGGTGAGCGGCTGA

Coding sequence (CDS)

ATGGCGAGGCGGAGGGAGAGGGAAGTTGTAGGGTTAGGGTGCGGAATCACGTTGTGCGCCGTAATTTCACCGGCGTGCGAATTCGCTAGGTCTATACTCACTAAATTACGCCGCCGCCCTAACAATAACACTGGCAGGACTCAGAATAGAGGATTGGAAGAGTGCTCGAGATCACTGGTGAGCGGCTGA

Protein sequence

MARRREREVVGLGCGITLCAVISPACEFARSILTKLRRRPNNNTGRTQNRGLEECSRSLVSG
Homology
[Close]
BLAST of ClCG08G008760 vs. TrEMBL
Match: A0A0A0KEA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052660 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.7e-13
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 1 

Query: 1  MARRREREVVGLGCGITLCAVISPACEFARSILTKLRRR--PNNNTGRTQNRGLE-ECSR 58
          M RR+ERE +G+GCG+ LCAVISPACEFAR+ILTKLRRR  PN   G T+N G + ECSR
Sbjct: 1  MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQKECSR 60

[Close]
BLAST of ClCG08G008760 vs. NCBI nr
Match: gi|700190887|gb|KGN46091.1| (hypothetical protein Csa_6G052660 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 6.7e-13
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 1 

Query: 1  MARRREREVVGLGCGITLCAVISPACEFARSILTKLRRR--PNNNTGRTQNRGLE-ECSR 58
          M RR+ERE +G+GCG+ LCAVISPACEFAR+ILTKLRRR  PN   G T+N G + ECSR
Sbjct: 1  MVRRKERETLGIGCGVALCAVISPACEFARAILTKLRRRPCPNIYNGSTENCGSQKECSR 60

The following BLAST results are available for this feature:
BLAST of ClCG08G008760 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KEA3_CUCSA4.7e-1368.33Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052660 PE=4 SV=1[more]
BLAST of ClCG08G008760 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190887|gb|KGN46091.1|6.7e-1368.33hypothetical protein Csa_6G052660 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G008760.1ClCG08G008760.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG08G008760Csa6G052660Cucumber (Chinese Long) v2cuwcgB497
ClCG08G008760Cla013645Watermelon (97103) v1wcgwmB400
ClCG08G008760CSPI06G04430Wild cucumber (PI 183967)cpiwcgB523
ClCG08G008760Cp4.1LG01g21490Cucurbita pepo (Zucchini)cpewcgB417
ClCG08G008760CsaV3_6G004780Cucumber (Chinese Long) v3cucwcgB515
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG08G008760Bottle gourd (USVL1VR-Ls)lsiwcgB443
ClCG08G008760Cucumber (Gy14) v2cgybwcgB455
ClCG08G008760Melon (DHL92) v3.6.1medwcgB294
ClCG08G008760Silver-seed gourdcarwcgB0067
ClCG08G008760Silver-seed gourdcarwcgB0805
ClCG08G008760Watermelon (97103) v2wcgwmbB336
ClCG08G008760Wax gourdwcgwgoB628
ClCG08G008760Cucumber (Gy14) v1cgywcgB623
ClCG08G008760Cucurbita maxima (Rimu)cmawcgB271
ClCG08G008760Cucurbita maxima (Rimu)cmawcgB680
ClCG08G008760Cucurbita moschata (Rifu)cmowcgB263
ClCG08G008760Cucurbita moschata (Rifu)cmowcgB682
ClCG08G008760Melon (DHL92) v3.5.1mewcgB300
ClCG08G008760Cucurbita pepo (Zucchini)cpewcgB183