Csa5G175890 (gene) Cucumber (Chinese Long) v2

NameCsa5G175890
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPlasma membrane protein 3-2; contains IPR000612 (Proteolipid membrane potential modulator)
LocationChr5 : 7469237 .. 7469543 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCAGAAACTTTTGTAGAAATCATTTTGGCAATTCTTCTTCCACCTCTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTCTGATACCTTCAAACTCTGTTTCCTTTTTTCATTCATTTTACAAGAACAACCTTGTGTTTGATCTTCTCTCTCAATTTCGTGTTTGTTGATCAGTGTTTTTTCTTTTTTCTTTTTGTGGTCTTTTGATTTGCAAGTGCAGGTGGAGTTTTGGATTTGTTTGTTGCTGACCATTTTGGGATATATACCTGGAATTATATATGCAATTTATGTTCTTGTTGGATAA

mRNA sequence

ATGGGTTCAGAAACTTTTGTAGAAATCATTTTGGCAATTCTTCTTCCACCTCTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTGGAGTTTTGGATTTGTTTGTTGCTGACCATTTTGGGATATATACCTGGAATTATATATGCAATTTATGTTCTTGTTGGATAA

Coding sequence (CDS)

ATGGGTTCAGAAACTTTTGTAGAAATCATTTTGGCAATTCTTCTTCCACCTCTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTGGAGTTTTGGATTTGTTTGTTGCTGACCATTTTGGGATATATACCTGGAATTATATATGCAATTTATGTTCTTGTTGGATAA

Protein sequence

MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG*
BLAST of Csa5G175890 vs. Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.9e-20
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          M + TFV+II+AILLPPLGVFLR+GCGVEFWICL+LT+LGYIPGIIYAIYVL
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVL 52

BLAST of Csa5G175890 vs. Swiss-Prot
Match: LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-19
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 54
          M S TF+E+ILAI+LPP+GVFLRYG  VEFWICLLLT+LGYIPGIIYA+YVLV
Sbjct: 1  MASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVLV 53

BLAST of Csa5G175890 vs. Swiss-Prot
Match: LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.3e-19
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 54
          MGS T +E+ILAI+LPP+GVFLRY  GVEFWICLLLTILGYIPGIIYA+YVLV
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

BLAST of Csa5G175890 vs. Swiss-Prot
Match: ESI3_ELYEL (Salt stress-induced hydrophobic peptide ESI3 OS=Elymus elongatus GN=ESI3 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.3e-19
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 54
          MGS T +E+ILAI+LPP+GVFLRY  GVEFWICLLLTILGYIPGIIYA+YVLV
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

BLAST of Csa5G175890 vs. Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.0e-18
Identity = 37/52 (71.15%), Postives = 46/52 (88.46%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          M + TFVEIILAI+LPPLGVFL++GC VEFWICL+LT+ GY+PGI+YA+Y++
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYII 52

BLAST of Csa5G175890 vs. TrEMBL
Match: A0A0A0KRZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175890 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 55
          MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

BLAST of Csa5G175890 vs. TrEMBL
Match: Q941D7_ARATH (At2g38901/At2g38901 OS=Arabidopsis thaliana GN=At2g38905 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 6.4e-22
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 55
          MGSETF+EIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

BLAST of Csa5G175890 vs. TrEMBL
Match: D7LCD2_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_482911 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 6.4e-22
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 55
          MGSETF+EIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

BLAST of Csa5G175890 vs. TrEMBL
Match: A0A067DNL4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038161mg PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-21
Identity = 50/54 (92.59%), Postives = 54/54 (100.00%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 55
          MGSETF+E+ILAILLPP+GVFLRYGCGVEFWICLLLT+LGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFLEVILAILLPPVGVFLRYGCGVEFWICLLLTVLGYIPGIIYAIYVLVG 54

BLAST of Csa5G175890 vs. TrEMBL
Match: V4T885_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033283mg PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-21
Identity = 50/54 (92.59%), Postives = 54/54 (100.00%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 55
          MGSETF+E+ILAILLPP+GVFLRYGCGVEFWICLLLT+LGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFLEVILAILLPPVGVFLRYGCGVEFWICLLLTVLGYIPGIIYAIYVLVG 54

BLAST of Csa5G175890 vs. TAIR10
Match: AT2G38905.1 (AT2G38905.1 Low temperature and salt responsive protein family)

HSP 1 Score: 110.5 bits (275), Expect = 3.2e-25
Identity = 52/54 (96.30%), Postives = 52/54 (96.30%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 55
          MGSETF+EIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

BLAST of Csa5G175890 vs. TAIR10
Match: AT3G05880.1 (AT3G05880.1 Low temperature and salt responsive protein family)

HSP 1 Score: 97.8 bits (242), Expect = 2.2e-21
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          M + TFV+II+AILLPPLGVFLR+GCGVEFWICL+LT+LGYIPGIIYAIYVL
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVL 52

BLAST of Csa5G175890 vs. TAIR10
Match: AT3G05890.1 (AT3G05890.1 Low temperature and salt responsive protein family)

HSP 1 Score: 90.1 bits (222), Expect = 4.5e-19
Identity = 37/52 (71.15%), Postives = 46/52 (88.46%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          M + TFVEIILAI+LPPLGVFL++GC VEFWICL+LT+ GY+PGI+YA+Y++
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYII 52

BLAST of Csa5G175890 vs. TAIR10
Match: AT1G57550.1 (AT1G57550.1 Low temperature and salt responsive protein family)

HSP 1 Score: 80.1 bits (196), Expect = 4.7e-16
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          MGS  F+E++ AI +PP+GVFLRYG G+EFW+CLLLT+  +IPG+IYAIYVL
Sbjct: 1  MGS--FLEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVL 50

BLAST of Csa5G175890 vs. TAIR10
Match: AT4G30650.1 (AT4G30650.1 Low temperature and salt responsive protein family)

HSP 1 Score: 76.3 bits (186), Expect = 6.8e-15
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 1

Query: 4  ETFVEIILAILLPPLGVFLRYGC-GVEFWICLLLTILGYIPGIIYAIYVLV 54
          E F EI++AILLPPLGV L+ GC  VEF ICL+LTILGYIPGIIYA+YV+V
Sbjct: 6  EVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIV 56

BLAST of Csa5G175890 vs. NCBI nr
Match: gi|700195289|gb|KGN50466.1| (hypothetical protein Csa_5G175890 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 55
          MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

BLAST of Csa5G175890 vs. NCBI nr
Match: gi|778700767|ref|XP_004143609.2| (PREDICTED: uncharacterized protein LOC101203086 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-22
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1

Query: 1   MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 55
           MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 64  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 117

BLAST of Csa5G175890 vs. NCBI nr
Match: gi|659090136|ref|XP_008445856.1| (PREDICTED: low temperature-induced protein lt101.2 [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 3.2e-22
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 55
          MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYV+VG
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVIVG 54

BLAST of Csa5G175890 vs. NCBI nr
Match: gi|18404892|ref|NP_565897.1| (Low temperature and salt responsive protein [Arabidopsis thaliana])

HSP 1 Score: 110.5 bits (275), Expect = 9.2e-22
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 55
          MGSETF+EIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

BLAST of Csa5G175890 vs. NCBI nr
Match: gi|567887380|ref|XP_006436212.1| (hypothetical protein CICLE_v10033283mg [Citrus clementina])

HSP 1 Score: 109.8 bits (273), Expect = 1.6e-21
Identity = 50/54 (92.59%), Postives = 54/54 (100.00%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 55
          MGSETF+E+ILAILLPP+GVFLRYGCGVEFWICLLLT+LGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFLEVILAILLPPVGVFLRYGCGVEFWICLLLTVLGYIPGIIYAIYVLVG 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RCI2A_ARATH3.9e-2084.62Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1[more]
LT02_HORVU1.5e-1981.13Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1[more]
LT01_HORVU3.3e-1983.02Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1[more]
ESI3_ELYEL3.3e-1983.02Salt stress-induced hydrophobic peptide ESI3 OS=Elymus elongatus GN=ESI3 PE=2 SV... [more]
RCI2B_ARATH8.0e-1871.15Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KRZ2_CUCSA1.3e-22100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175890 PE=4 SV=1[more]
Q941D7_ARATH6.4e-2296.30At2g38901/At2g38901 OS=Arabidopsis thaliana GN=At2g38905 PE=2 SV=1[more]
D7LCD2_ARALL6.4e-2296.30Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
A0A067DNL4_CITSI1.1e-2192.59Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038161mg PE=4 SV=1[more]
V4T885_9ROSI1.1e-2192.59Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033283mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G38905.13.2e-2596.30 Low temperature and salt responsive protein family[more]
AT3G05880.12.2e-2184.62 Low temperature and salt responsive protein family[more]
AT3G05890.14.5e-1971.15 Low temperature and salt responsive protein family[more]
AT1G57550.14.7e-1667.31 Low temperature and salt responsive protein family[more]
AT4G30650.16.8e-1574.51 Low temperature and salt responsive protein family[more]
Match NameE-valueIdentityDescription
gi|700195289|gb|KGN50466.1|1.9e-22100.00hypothetical protein Csa_5G175890 [Cucumis sativus][more]
gi|778700767|ref|XP_004143609.2|1.9e-22100.00PREDICTED: uncharacterized protein LOC101203086 [Cucumis sativus][more]
gi|659090136|ref|XP_008445856.1|3.2e-2298.15PREDICTED: low temperature-induced protein lt101.2 [Cucumis melo][more]
gi|18404892|ref|NP_565897.1|9.2e-2296.30Low temperature and salt responsive protein [Arabidopsis thaliana][more]
gi|567887380|ref|XP_006436212.1|1.6e-2192.59hypothetical protein CICLE_v10033283mg [Citrus clementina][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000612PMP3
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0031410 cytoplasmic vesicle
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G175890.1Csa5G175890.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000612Proteolipid membrane potential modulatorPANTHERPTHR21659HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATEDcoord: 1..53
score: 1.6
IPR000612Proteolipid membrane potential modulatorPFAMPF01679Pmp3coord: 6..53
score: 3.2
IPR000612Proteolipid membrane potential modulatorPROSITEPS01309UPF0057coord: 10..25
scor
NoneNo IPR availablePANTHERPTHR21659:SF25SUBFAMILY NOT NAMEDcoord: 1..53
score: 1.6

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Csa5G175890Csa3G736860Cucumber (Chinese Long) v2cucuB104