CmoCh04G002740 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G002740
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionLow temperature and salt responsive protein family
LocationCmo_Chr04 : 1387150 .. 1388539 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCTGAAACTTTTGTAGAAATCATATTAGCAATTCTTCTTCCACCACTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTGATGTCTCAATTCTTCTCTCCAAATTCTGTTTTCATTTTACAACATTTCTCTGTCTTTTCTTTCAAGTTGTTTTTCTGATTGTGTTCTTGTTTTTGATTTGCAAGTGCAGGTAGAGTTTTGGATTTGTTTGTTGCTGACCATATTGGGATATATCCCTGGAATTATATATGCAATATATGTGCTGGTTGGTTAGAAAAGGAAGAAATTTGAAAGCCTAGTTTTAATGAATGCCTCTTTTTTATTTTGGTTTGTAGAAAGTTTGTGTGTTTATGGCTCTTGGATCTATGTTGTTGTAGAACACTGAATAGATATATTATCATTTATTGGCAAGTACTGATCTAATCAAGGGTTGTTGCTTCATCTGGGTTTTGGTGTTAGGCATCGCTCTCTGTTCTAAATGGAAGTAACGTTCAAAATATCTTAAAATTGGTATGAAAATTGTTAGTTCCCTTGGATGATTCAGGAAGATGTGCTTGGTTAGTTCTTAAAATTAATTTAAATTTTGGATATAATATGAACATGTTTTCAGTTTAGTTTCTAAAACTAAATTTGACAGAACAGTTATCCACTGATTCTAGTGTTTCTGTACTATCAAAGAGTCTTGTCCTTTCTGGAAGGCCACAGAAAGATAATTTTTGGGGGTAAAGAGATCTTTTTTTTAAACTTTGATGAGGTATGATTTGTGGATATTATCGATTGTGGTGCCCTTCTTTTCGTGGTTCCTTCATCTAACCTTTCATTGAACCTTCATTTGTATGTGCTCCATTGGTAGCAATGATGAAAGAAAAATGAGGTTTGTCCCTCCTGCATCTGCTTGCAACTCCCGCTTTCTCTTCCTTGATCGTAGTTGATTCTGCACAAGACGGGATCTCTACTTGGCGCTTTGGCCCTGAACCCAACCCGATATCGGGATAACAGGAATCCACAGTAGTTTATTGTCTAGATACGATTATTAGTCGTTAGAGATCTTAAGTATAAGAGTAGTCTCTGGAATAGTCTCGTTGCAAGAAACTTGCACCTCTCTTCTCCTTTGTAAGACGGTCCAACACGATCAACACCGAACCGAAGTTTGCACCTTTCTTCTTCTTTGTAAGTCAACCAGGATCCCAACATACTGTCTTCTTTGGTAGAGCCAATATACTTCTTCGGTTTTTTTTTTTTTTTTTGGCAGAGCTGCGATATTATCATAGATATGATAAATAGAATCTACGATAAAATCTATGGAGAGTCGGAGACACTTTCCTTGTATGCTAACAATAAAACTTGTTGGCAATGGGCCGGAATTTTTGTTTTTAGCAAAAACTGA

mRNA sequence

ATGGGTTCTGAAACTTTTGTAGAAATCATATTAGCAATTCTTCTTCCACCACTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTGATGTCTCAATTCTTCTCTCCAAATTCTGTTTTCATTTTACAACATTTCTCTGTAGAGTTTTGGATTTGTTTGTTGCTGACCATATTGGGATATATCCCTGGAATTATATATGCAATATATGTGCTGAGCTGCGATATTATCATAGATATGATAAATAGAATCTACGATAAAATCTATGGAGAGTCGGAGACACTTTCCTTGTATGCTAACAATAAAACTTGTTGGCAATGGGCCGGAATTTTTGTTTTTAGCAAAAACTGA

Coding sequence (CDS)

ATGGGTTCTGAAACTTTTGTAGAAATCATATTAGCAATTCTTCTTCCACCACTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTGATGTCTCAATTCTTCTCTCCAAATTCTGTTTTCATTTTACAACATTTCTCTGTAGAGTTTTGGATTTGTTTGTTGCTGACCATATTGGGATATATCCCTGGAATTATATATGCAATATATGTGCTGAGCTGCGATATTATCATAGATATGATAAATAGAATCTACGATAAAATCTATGGAGAGTCGGAGACACTTTCCTTGTATGCTAACAATAAAACTTGTTGGCAATGGGCCGGAATTTTTGTTTTTAGCAAAAACTGA
Homology
[Close]
BLAST of CmoCh04G002740 vs. Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-15
Identity = 44/71 (61.97%), Postives = 51/71 (71.83%), Query Frame = 1 

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVMSQFFSPNSVFILQHFSVEFWICLLLTILGYI 60
          M + TFV+II+AILLPPLGVFLR+GCGV                  EFWICL+LT+LGYI
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGV------------------EFWICLVLTLLGYI 53

Query: 61 PGIIYAIYVLS 72
          PGIIYAIYVL+
Sbjct: 61 PGIIYAIYVLT 53

[Close]
BLAST of CmoCh04G002740 vs. Swiss-Prot
Match: LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.0e-14
Identity = 42/70 (60.00%), Postives = 49/70 (70.00%), Query Frame = 1 

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVMSQFFSPNSVFILQHFSVEFWICLLLTILGYI 60
          M S TF+E+ILAI+LPP+GVFLRYG                   +VEFWICLLLT+LGYI
Sbjct: 1  MASATFIEVILAIILPPVGVFLRYG------------------LAVEFWICLLLTLLGYI 52

Query: 61 PGIIYAIYVL 71
          PGIIYA+YVL
Sbjct: 61 PGIIYAVYVL 52

[Close]
BLAST of CmoCh04G002740 vs. Swiss-Prot
Match: LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-13
Identity = 43/70 (61.43%), Postives = 48/70 (68.57%), Query Frame = 1 

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVMSQFFSPNSVFILQHFSVEFWICLLLTILGYI 60
          MGS T +E+ILAI+LPP+GVFLRY  GV                  EFWICLLLTILGYI
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGV------------------EFWICLLLTILGYI 52

Query: 61 PGIIYAIYVL 71
          PGIIYA+YVL
Sbjct: 61 PGIIYAVYVL 52

[Close]
BLAST of CmoCh04G002740 vs. Swiss-Prot
Match: ESI3_ELYEL (Salt stress-induced hydrophobic peptide ESI3 OS=Elymus elongatus GN=ESI3 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-13
Identity = 43/70 (61.43%), Postives = 48/70 (68.57%), Query Frame = 1 

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVMSQFFSPNSVFILQHFSVEFWICLLLTILGYI 60
          MGS T +E+ILAI+LPP+GVFLRY  GV                  EFWICLLLTILGYI
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGV------------------EFWICLLLTILGYI 52

Query: 61 PGIIYAIYVL 71
          PGIIYA+YVL
Sbjct: 61 PGIIYAVYVL 52

[Close]
BLAST of CmoCh04G002740 vs. Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.3e-13
Identity = 37/71 (52.11%), Postives = 49/71 (69.01%), Query Frame = 1 

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVMSQFFSPNSVFILQHFSVEFWICLLLTILGYI 60
          M + TFVEIILAI+LPPLGVFL++GC                   VEFWICL+LT+ GY+
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFGC------------------KVEFWICLILTLFGYL 53

Query: 61 PGIIYAIYVLS 72
          PGI+YA+Y+++
Sbjct: 61 PGILYALYIIT 53

[Close]
BLAST of CmoCh04G002740 vs. TrEMBL
Match: A0A0A0KRZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175890 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.9e-16
Identity = 52/70 (74.29%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVMSQFFSPNSVFILQHFSVEFWICLLLTILGYI 60
          MGSETFVEIILAILLPPLGVFLRYGCG                  VEFWICLLLTILGYI
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCG------------------VEFWICLLLTILGYI 52

Query: 61 PGIIYAIYVL 71
          PGIIYAIYVL
Sbjct: 61 PGIIYAIYVL 52

[Close]
BLAST of CmoCh04G002740 vs. TrEMBL
Match: D7LCD2_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_482911 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-15
Identity = 50/70 (71.43%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVMSQFFSPNSVFILQHFSVEFWICLLLTILGYI 60
          MGSETF+EIILAILLPP+GVFLRYGCGV                  EFWICLLLTILGYI
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGV------------------EFWICLLLTILGYI 52

Query: 61 PGIIYAIYVL 71
          PGIIYAIYVL
Sbjct: 61 PGIIYAIYVL 52

[Close]
BLAST of CmoCh04G002740 vs. TrEMBL
Match: Q941D7_ARATH (At2g38901/At2g38901 OS=Arabidopsis thaliana GN=At2g38905 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-15
Identity = 50/70 (71.43%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVMSQFFSPNSVFILQHFSVEFWICLLLTILGYI 60
          MGSETF+EIILAILLPP+GVFLRYGCGV                  EFWICLLLTILGYI
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGV------------------EFWICLLLTILGYI 52

Query: 61 PGIIYAIYVL 71
          PGIIYAIYVL
Sbjct: 61 PGIIYAIYVL 52

[Close]
BLAST of CmoCh04G002740 vs. TrEMBL
Match: A0A067DNL4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038161mg PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.4e-15
Identity = 48/70 (68.57%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVMSQFFSPNSVFILQHFSVEFWICLLLTILGYI 60
          MGSETF+E+ILAILLPP+GVFLRYGCGV                  EFWICLLLT+LGYI
Sbjct: 1  MGSETFLEVILAILLPPVGVFLRYGCGV------------------EFWICLLLTVLGYI 52

Query: 61 PGIIYAIYVL 71
          PGIIYAIYVL
Sbjct: 61 PGIIYAIYVL 52

[Close]
BLAST of CmoCh04G002740 vs. TrEMBL
Match: A0A087H3U2_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G171900 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.4e-15
Identity = 48/70 (68.57%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVMSQFFSPNSVFILQHFSVEFWICLLLTILGYI 60
          MGSETF+E+ILAILLPP+GVFLRYGCGV                  EFWICLLLT+LGYI
Sbjct: 1  MGSETFLEVILAILLPPVGVFLRYGCGV------------------EFWICLLLTVLGYI 52

Query: 61 PGIIYAIYVL 71
          PGIIYAIYVL
Sbjct: 61 PGIIYAIYVL 52

[Close]
BLAST of CmoCh04G002740 vs. TAIR10
Match: AT2G38905.1 (AT2G38905.1 Low temperature and salt responsive protein family)

HSP 1 Score: 90.5 bits (223), Expect = 7.2e-19
Identity = 50/70 (71.43%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVMSQFFSPNSVFILQHFSVEFWICLLLTILGYI 60
          MGSETF+EIILAILLPP+GVFLRYGCGV                  EFWICLLLTILGYI
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGV------------------EFWICLLLTILGYI 52

Query: 61 PGIIYAIYVL 71
          PGIIYAIYVL
Sbjct: 61 PGIIYAIYVL 52

[Close]
BLAST of CmoCh04G002740 vs. TAIR10
Match: AT3G05880.1 (AT3G05880.1 Low temperature and salt responsive protein family)

HSP 1 Score: 82.4 bits (202), Expect = 2.0e-16
Identity = 44/71 (61.97%), Postives = 51/71 (71.83%), Query Frame = 1 

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVMSQFFSPNSVFILQHFSVEFWICLLLTILGYI 60
          M + TFV+II+AILLPPLGVFLR+GCGV                  EFWICL+LT+LGYI
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGV------------------EFWICLVLTLLGYI 53

Query: 61 PGIIYAIYVLS 72
          PGIIYAIYVL+
Sbjct: 61 PGIIYAIYVLT 53

[Close]
BLAST of CmoCh04G002740 vs. TAIR10
Match: AT3G05890.1 (AT3G05890.1 Low temperature and salt responsive protein family)

HSP 1 Score: 75.5 bits (184), Expect = 2.4e-14
Identity = 37/71 (52.11%), Postives = 49/71 (69.01%), Query Frame = 1 

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVMSQFFSPNSVFILQHFSVEFWICLLLTILGYI 60
          M + TFVEIILAI+LPPLGVFL++GC                   VEFWICL+LT+ GY+
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFGC------------------KVEFWICLILTLFGYL 53

Query: 61 PGIIYAIYVLS 72
          PGI+YA+Y+++
Sbjct: 61 PGILYALYIIT 53

[Close]
BLAST of CmoCh04G002740 vs. TAIR10
Match: AT1G57550.1 (AT1G57550.1 Low temperature and salt responsive protein family)

HSP 1 Score: 63.9 bits (154), Expect = 7.2e-11
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 1 

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVMSQFFSPNSVFILQHFSVEFWICLLLTILGYI 60
          MGS  F+E++ AI +PP+GVFLRYG G                  +EFW+CLLLT+  +I
Sbjct: 1  MGS--FLEVLCAIFIPPVGVFLRYGLG------------------LEFWVCLLLTLFAFI 51

Query: 61 PGIIYAIYVLS 72
          PG+IYAIYVL+
Sbjct: 61 PGLIYAIYVLT 51

[Close]
BLAST of CmoCh04G002740 vs. TAIR10
Match: AT4G30650.1 (AT4G30650.1 Low temperature and salt responsive protein family)

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-10
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 1 

Query: 4  ETFVEIILAILLPPLGVFLRYGCGVMSQFFSPNSVFILQHFSVEFWICLLLTILGYIPGI 63
          E F EI++AILLPPLGV L+ GC                  +VEF ICL+LTILGYIPGI
Sbjct: 6  EVFCEILIAILLPPLGVCLKRGC-----------------CTVEFLICLVLTILGYIPGI 55

Query: 64 IYAIYVL 71
          IYA+YV+
Sbjct: 66 IYALYVI 55

[Close]
BLAST of CmoCh04G002740 vs. NCBI nr
Match: gi|700195289|gb|KGN50466.1| (hypothetical protein Csa_5G175890 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 4.1e-16
Identity = 52/70 (74.29%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVMSQFFSPNSVFILQHFSVEFWICLLLTILGYI 60
          MGSETFVEIILAILLPPLGVFLRYGCG                  VEFWICLLLTILGYI
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCG------------------VEFWICLLLTILGYI 52

Query: 61 PGIIYAIYVL 71
          PGIIYAIYVL
Sbjct: 61 PGIIYAIYVL 52

[Close]
BLAST of CmoCh04G002740 vs. NCBI nr
Match: gi|778700767|ref|XP_004143609.2| (PREDICTED: uncharacterized protein LOC101203086 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 4.1e-16
Identity = 52/70 (74.29%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 1   MGSETFVEIILAILLPPLGVFLRYGCGVMSQFFSPNSVFILQHFSVEFWICLLLTILGYI 60
           MGSETFVEIILAILLPPLGVFLRYGCG                  VEFWICLLLTILGYI
Sbjct: 64  MGSETFVEIILAILLPPLGVFLRYGCG------------------VEFWICLLLTILGYI 115

Query: 61  PGIIYAIYVL 71
           PGIIYAIYVL
Sbjct: 124 PGIIYAIYVL 115

[Close]
BLAST of CmoCh04G002740 vs. NCBI nr
Match: gi|659090136|ref|XP_008445856.1| (PREDICTED: low temperature-induced protein lt101.2 [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 7.0e-16
Identity = 51/70 (72.86%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVMSQFFSPNSVFILQHFSVEFWICLLLTILGYI 60
          MGSETFVEIILAILLPPLGVFLRYGCG                  VEFWICLLLTILGYI
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCG------------------VEFWICLLLTILGYI 52

Query: 61 PGIIYAIYVL 71
          PGIIYAIYV+
Sbjct: 61 PGIIYAIYVI 52

[Close]
BLAST of CmoCh04G002740 vs. NCBI nr
Match: gi|18404892|ref|NP_565897.1| (Low temperature and salt responsive protein [Arabidopsis thaliana])

HSP 1 Score: 90.5 bits (223), Expect = 2.0e-15
Identity = 50/70 (71.43%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVMSQFFSPNSVFILQHFSVEFWICLLLTILGYI 60
          MGSETF+EIILAILLPP+GVFLRYGCGV                  EFWICLLLTILGYI
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGV------------------EFWICLLLTILGYI 52

Query: 61 PGIIYAIYVL 71
          PGIIYAIYVL
Sbjct: 61 PGIIYAIYVL 52

[Close]
BLAST of CmoCh04G002740 vs. NCBI nr
Match: gi|567887380|ref|XP_006436212.1| (hypothetical protein CICLE_v10033283mg [Citrus clementina])

HSP 1 Score: 89.7 bits (221), Expect = 3.5e-15
Identity = 48/70 (68.57%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVMSQFFSPNSVFILQHFSVEFWICLLLTILGYI 60
          MGSETF+E+ILAILLPP+GVFLRYGCGV                  EFWICLLLT+LGYI
Sbjct: 1  MGSETFLEVILAILLPPVGVFLRYGCGV------------------EFWICLLLTVLGYI 52

Query: 61 PGIIYAIYVL 71
          PGIIYAIYVL
Sbjct: 61 PGIIYAIYVL 52

The following BLAST results are available for this feature:
BLAST of CmoCh04G002740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RCI2A_ARATH3.5e-1561.97Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1[more]
LT02_HORVU5.0e-1460.00Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1[more]
LT01_HORVU1.5e-1361.43Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1[more]
ESI3_ELYEL1.5e-1361.43Salt stress-induced hydrophobic peptide ESI3 OS=Elymus elongatus GN=ESI3 PE=2 SV... [more]
RCI2B_ARATH4.3e-1352.11Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1[more]
BLAST of CmoCh04G002740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRZ2_CUCSA2.9e-1674.29Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175890 PE=4 SV=1[more]
D7LCD2_ARALL1.4e-1571.43Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
Q941D7_ARATH1.4e-1571.43At2g38901/At2g38901 OS=Arabidopsis thaliana GN=At2g38905 PE=2 SV=1[more]
A0A067DNL4_CITSI2.4e-1568.57Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038161mg PE=4 SV=1[more]
A0A087H3U2_ARAAL2.4e-1568.57Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G171900 PE=4 SV=1[more]
BLAST of CmoCh04G002740 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G38905.17.2e-1971.43 Low temperature and salt responsive protein family[more]
AT3G05880.12.0e-1661.97 Low temperature and salt responsive protein family[more]
AT3G05890.12.4e-1452.11 Low temperature and salt responsive protein family[more]
AT1G57550.17.2e-1149.30 Low temperature and salt responsive protein family[more]
AT4G30650.11.6e-1055.22 Low temperature and salt responsive protein family[more]
BLAST of CmoCh04G002740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700195289|gb|KGN50466.1|4.1e-1674.29hypothetical protein Csa_5G175890 [Cucumis sativus][more]
gi|778700767|ref|XP_004143609.2|4.1e-1674.29PREDICTED: uncharacterized protein LOC101203086 [Cucumis sativus][more]
gi|659090136|ref|XP_008445856.1|7.0e-1672.86PREDICTED: low temperature-induced protein lt101.2 [Cucumis melo][more]
gi|18404892|ref|NP_565897.1|2.0e-1571.43Low temperature and salt responsive protein [Arabidopsis thaliana][more]
gi|567887380|ref|XP_006436212.1|3.5e-1568.57hypothetical protein CICLE_v10033283mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000612PMP3
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0031410 cytoplasmic vesicle
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G002740.1CmoCh04G002740.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000612Proteolipid membrane potential modulatorPANTHERPTHR21659HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATEDcoord: 47..87
score: 1.3E-25coord: 1..28
score: 1.3
IPR000612Proteolipid membrane potential modulatorPFAMPF01679Pmp3coord: 6..28
score: 1.6E-6coord: 29..70
score: 2.7
IPR000612Proteolipid membrane potential modulatorPROSITEPS01309UPF0057coord: 10..25
scor
NoneNo IPR availablePANTHERPTHR21659:SF31SUBFAMILY NOT NAMEDcoord: 47..87
score: 1.3E-25coord: 1..28
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G002740Cucsa.166000Cucumber (Gy14) v1cgycmoB0474
CmoCh04G002740Cucsa.307130Cucumber (Gy14) v1cgycmoB0843
CmoCh04G002740CmaCh04G002680Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G002740Csa3G736860Cucumber (Chinese Long) v2cmocuB692
CmoCh04G002740Csa5G175890Cucumber (Chinese Long) v2cmocuB737
CmoCh04G002740ClCG02G013890Watermelon (Charleston Gray)cmowcgB644
CmoCh04G002740Cp4.1LG01g04360Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G002740CsaV3_3G035580Cucumber (Chinese Long) v3cmocucB0817
CmoCh04G002740Cla97C02G039530Watermelon (97103) v2cmowmbB714
CmoCh04G002740Carg01002Silver-seed gourdcarcmoB0226
CmoCh04G002740Carg25668Silver-seed gourdcarcmoB1148
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G002740Wax gourdcmowgoB0893
CmoCh04G002740Cucurbita moschata (Rifu)cmocmoB259
CmoCh04G002740Cucurbita moschata (Rifu)cmocmoB421
CmoCh04G002740Cucurbita moschata (Rifu)cmocmoB433
CmoCh04G002740Cucurbita moschata (Rifu)cmocmoB464
CmoCh04G002740Cucurbita maxima (Rimu)cmacmoB307
CmoCh04G002740Cucurbita maxima (Rimu)cmacmoB731
CmoCh04G002740Wild cucumber (PI 183967)cmocpiB747
CmoCh04G002740Wild cucumber (PI 183967)cmocpiB755
CmoCh04G002740Cucumber (Chinese Long) v2cmocuB746
CmoCh04G002740Melon (DHL92) v3.5.1cmomeB619
CmoCh04G002740Melon (DHL92) v3.5.1cmomeB646
CmoCh04G002740Watermelon (97103) v1cmowmB644
CmoCh04G002740Watermelon (97103) v1cmowmB720
CmoCh04G002740Cucurbita pepo (Zucchini)cmocpeB674
CmoCh04G002740Cucurbita pepo (Zucchini)cmocpeB705
CmoCh04G002740Bottle gourd (USVL1VR-Ls)cmolsiB619
CmoCh04G002740Bottle gourd (USVL1VR-Ls)cmolsiB634
CmoCh04G002740Bottle gourd (USVL1VR-Ls)cmolsiB670
CmoCh04G002740Cucumber (Gy14) v2cgybcmoB652
CmoCh04G002740Melon (DHL92) v3.6.1cmomedB733
CmoCh04G002740Silver-seed gourdcarcmoB0422
CmoCh04G002740Silver-seed gourdcarcmoB1139
CmoCh04G002740Cucumber (Chinese Long) v3cmocucB0837
CmoCh04G002740Cucumber (Chinese Long) v3cmocucB0873
CmoCh04G002740Cucumber (Chinese Long) v3cmocucB0882
CmoCh04G002740Cucumber (Chinese Long) v3cmocucB0908
CmoCh04G002740Watermelon (97103) v2cmowmbB716