CmaCh04G002680 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGACTGAGGTTTCGAATCTGTAGCCATACCCACAAGGTGTTCGATGAAAATCCTCAGTGGGTTTTTCTTCACACTATTTGTTGAGCTGAAGGCAAGTCTTTCTTCTCTCGTCCTGCTCTAATGCTATTTGTTTACCCGTTTGAGATAGAATGAGTAATGGCAAGTCAGCTGCAAATTTGGTGAACTTTCAGACTATCTTCATTTTGTTTTTGCATCATTTCCTTGTTATAGTTCATCAAGTTTCTTAACTGAATGCTCTCTATAATTTGATTGTGCTGCTGCCATGGACGGCCATGATTCTTGCTTGAAACCACCCTCTATCTAATTCAAAACATTATCAAATTTTGTTTTCGTTACAATTGCCTAAATCTTGTAATTTTATGCCAACAAATCTCTGTTAAAAATAAATTAAAAATTAATGAATTTAGTTGGTATGTAAAATAAATTTTATATCCTTAACTTTATGTAGAATATGTTCGATGATGAAAGCCCTACATCGTAGGGAATGATCATGAGTTTATAAGTGAGGAATACTAACTTCATTGGTATGAGGCCTTTTGGAGAAGTCCAACTCAAAGTCATAATAGCTTATTCTCAATGTGAACAATATCATACCATTGTGGAGAGTCGTGTCCGTTTAACGTAGTAATAATAATAATAATAATGTTGAAGAAAAGAAGTTCAAATTTTATTCACAAAACACCCAATAGCAAAAGTGCCACACGTGTTAGTCTCTTCTCCCACGTGTCATTGCCAAAACCTTAGACTATTGCCACCTCCCCACAACTAGTTTTGGGTTCTCTTTCTTCTTCAAGGTGCAGCTTTCTTCAGCTTTAAAACCTCATTTTTTTGTCAATGAGACAGAAACAGAGAAAGAATTATGGGTTCTGAAACTTTTGTAGAAATCATATTAGCAATTCTTCTTCCACCACTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTGATGTCTCAATTCTTCTCTCCAAATTCTGTTTTCATTTTACAACATTTCTCTGTCTTTTCTTTCAAATTGTTTTTCTGATTGTGTTCTTGTTTTTGATTTGCAAGTGCAGGTAGAGTTTTGGATTTGTTTGTTGCTGACCATATTGGGATATATCCCTGGAATTATATATGCAATATATGTGCTGGTTGGTTAGAAAAGGAAGAAATTTGAAAGCCTAGTTTTAATGAATGCCTCTTTTTTATTTTGGTTTGTAGAAAGTTTGTGTGTTTATGGCTCTTGGATCTATGTTGTTGTAGAACACTGA ATGGGACTGAGGTTTCGAATCTGTAGCCATACCCACAAGGTGTTCGATGAAAATCCTCAAAATCATATTAGCAATTCTTCTTCCACCACTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTAGAGTTTTGGATTTGTTTGTTGCTGACCATATTGGGATATATCCCTGGAATTATATATGCAATATATGTGCTGGTTGAAAGTTTGTGTGTTTATGGCTCTTGGATCTATGTTGTTGTAGAACACTGA ATGAAAATCCTCAAAATCATATTAGCAATTCTTCTTCCACCACTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTAGAGTTTTGGATTTGTTTGTTGCTGACCATATTGGGATATATCCCTGGAATTATATATGCAATATATGTGCTGGTTGAAAGTTTGTGTGTTTATGGCTCTTGGATCTATGTTGTTGTAGAACACTGA MKILKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVESLCVYGSWIYVVVEH
BLAST of CmaCh04G002680 vs. Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 2.6e-15 Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 1
BLAST of CmaCh04G002680 vs. Swiss-Prot
Match: LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 1.0e-14 Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 1
BLAST of CmaCh04G002680 vs. Swiss-Prot
Match: ESI3_ELYEL (Salt stress-induced hydrophobic peptide ESI3 OS=Elymus elongatus GN=ESI3 PE=2 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 1.0e-14 Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 1
BLAST of CmaCh04G002680 vs. Swiss-Prot
Match: LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 2.9e-14 Identity = 38/47 (80.85%), Postives = 45/47 (95.74%), Query Frame = 1
BLAST of CmaCh04G002680 vs. Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2) HSP 1 Score: 75.1 bits (183), Expect = 3.2e-13 Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 1
BLAST of CmaCh04G002680 vs. TrEMBL
Match: A0A0A0KRZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175890 PE=4 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 5.3e-15 Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of CmaCh04G002680 vs. TrEMBL
Match: Q941D7_ARATH (At2g38901/At2g38901 OS=Arabidopsis thaliana GN=At2g38905 PE=2 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 5.3e-15 Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of CmaCh04G002680 vs. TrEMBL
Match: D7LCD2_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_482911 PE=4 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 5.3e-15 Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of CmaCh04G002680 vs. TrEMBL
Match: A0A0D3C522_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 9.1e-15 Identity = 43/47 (91.49%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of CmaCh04G002680 vs. TrEMBL
Match: V4T885_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033283mg PE=4 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 9.1e-15 Identity = 43/47 (91.49%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of CmaCh04G002680 vs. TAIR10
Match: AT2G38905.1 (AT2G38905.1 Low temperature and salt responsive protein family) HSP 1 Score: 87.8 bits (216), Expect = 2.7e-18 Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of CmaCh04G002680 vs. TAIR10
Match: AT3G05880.1 (AT3G05880.1 Low temperature and salt responsive protein family) HSP 1 Score: 82.0 bits (201), Expect = 1.5e-16 Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 1
BLAST of CmaCh04G002680 vs. TAIR10
Match: AT3G05890.1 (AT3G05890.1 Low temperature and salt responsive protein family) HSP 1 Score: 73.9 bits (180), Expect = 4.0e-14 Identity = 32/48 (66.67%), Postives = 45/48 (93.75%), Query Frame = 1
BLAST of CmaCh04G002680 vs. TAIR10
Match: AT1G57550.1 (AT1G57550.1 Low temperature and salt responsive protein family) HSP 1 Score: 69.3 bits (168), Expect = 9.9e-13 Identity = 31/48 (64.58%), Postives = 42/48 (87.50%), Query Frame = 1
BLAST of CmaCh04G002680 vs. TAIR10
Match: AT4G30660.1 (AT4G30660.1 Low temperature and salt responsive protein family) HSP 1 Score: 63.5 bits (153), Expect = 5.5e-11 Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 1
BLAST of CmaCh04G002680 vs. NCBI nr
Match: gi|700195289|gb|KGN50466.1| (hypothetical protein Csa_5G175890 [Cucumis sativus]) HSP 1 Score: 87.8 bits (216), Expect = 7.7e-15 Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of CmaCh04G002680 vs. NCBI nr
Match: gi|18404892|ref|NP_565897.1| (Low temperature and salt responsive protein [Arabidopsis thaliana]) HSP 1 Score: 87.8 bits (216), Expect = 7.7e-15 Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of CmaCh04G002680 vs. NCBI nr
Match: gi|778700767|ref|XP_004143609.2| (PREDICTED: uncharacterized protein LOC101203086 [Cucumis sativus]) HSP 1 Score: 87.8 bits (216), Expect = 7.7e-15 Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of CmaCh04G002680 vs. NCBI nr
Match: gi|567887380|ref|XP_006436212.1| (hypothetical protein CICLE_v10033283mg [Citrus clementina]) HSP 1 Score: 87.0 bits (214), Expect = 1.3e-14 Identity = 43/47 (91.49%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of CmaCh04G002680 vs. NCBI nr
Match: gi|685302127|ref|XP_009141770.1| (PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Brassica rapa]) HSP 1 Score: 87.0 bits (214), Expect = 1.3e-14 Identity = 43/47 (91.49%), Postives = 47/47 (100.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |