CmaCh04G002680 (gene) Cucurbita maxima (Rimu)

NameCmaCh04G002680
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionLow temperature and salt responsive protein family
LocationCma_Chr04 : 1322623 .. 1323893 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACTGAGGTTTCGAATCTGTAGCCATACCCACAAGGTGTTCGATGAAAATCCTCAGTGGGTTTTTCTTCACACTATTTGTTGAGCTGAAGGCAAGTCTTTCTTCTCTCGTCCTGCTCTAATGCTATTTGTTTACCCGTTTGAGATAGAATGAGTAATGGCAAGTCAGCTGCAAATTTGGTGAACTTTCAGACTATCTTCATTTTGTTTTTGCATCATTTCCTTGTTATAGTTCATCAAGTTTCTTAACTGAATGCTCTCTATAATTTGATTGTGCTGCTGCCATGGACGGCCATGATTCTTGCTTGAAACCACCCTCTATCTAATTCAAAACATTATCAAATTTTGTTTTCGTTACAATTGCCTAAATCTTGTAATTTTATGCCAACAAATCTCTGTTAAAAATAAATTAAAAATTAATGAATTTAGTTGGTATGTAAAATAAATTTTATATCCTTAACTTTATGTAGAATATGTTCGATGATGAAAGCCCTACATCGTAGGGAATGATCATGAGTTTATAAGTGAGGAATACTAACTTCATTGGTATGAGGCCTTTTGGAGAAGTCCAACTCAAAGTCATAATAGCTTATTCTCAATGTGAACAATATCATACCATTGTGGAGAGTCGTGTCCGTTTAACGTAGTAATAATAATAATAATAATGTTGAAGAAAAGAAGTTCAAATTTTATTCACAAAACACCCAATAGCAAAAGTGCCACACGTGTTAGTCTCTTCTCCCACGTGTCATTGCCAAAACCTTAGACTATTGCCACCTCCCCACAACTAGTTTTGGGTTCTCTTTCTTCTTCAAGGTGCAGCTTTCTTCAGCTTTAAAACCTCATTTTTTTGTCAATGAGACAGAAACAGAGAAAGAATTATGGGTTCTGAAACTTTTGTAGAAATCATATTAGCAATTCTTCTTCCACCACTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTGATGTCTCAATTCTTCTCTCCAAATTCTGTTTTCATTTTACAACATTTCTCTGTCTTTTCTTTCAAATTGTTTTTCTGATTGTGTTCTTGTTTTTGATTTGCAAGTGCAGGTAGAGTTTTGGATTTGTTTGTTGCTGACCATATTGGGATATATCCCTGGAATTATATATGCAATATATGTGCTGGTTGGTTAGAAAAGGAAGAAATTTGAAAGCCTAGTTTTAATGAATGCCTCTTTTTTATTTTGGTTTGTAGAAAGTTTGTGTGTTTATGGCTCTTGGATCTATGTTGTTGTAGAACACTGA

mRNA sequence

ATGGGACTGAGGTTTCGAATCTGTAGCCATACCCACAAGGTGTTCGATGAAAATCCTCAAAATCATATTAGCAATTCTTCTTCCACCACTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTAGAGTTTTGGATTTGTTTGTTGCTGACCATATTGGGATATATCCCTGGAATTATATATGCAATATATGTGCTGGTTGAAAGTTTGTGTGTTTATGGCTCTTGGATCTATGTTGTTGTAGAACACTGA

Coding sequence (CDS)

ATGAAAATCCTCAAAATCATATTAGCAATTCTTCTTCCACCACTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTAGAGTTTTGGATTTGTTTGTTGCTGACCATATTGGGATATATCCCTGGAATTATATATGCAATATATGTGCTGGTTGAAAGTTTGTGTGTTTATGGCTCTTGGATCTATGTTGTTGTAGAACACTGA

Protein sequence

MKILKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVESLCVYGSWIYVVVEH
BLAST of CmaCh04G002680 vs. Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.6e-15
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 1

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVE 52
          + II+AILLPPLGVFLR+GCGVEFWICL+LT+LGYIPGIIYAIYVL +
Sbjct: 7  VDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54

BLAST of CmaCh04G002680 vs. Swiss-Prot
Match: LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.0e-14
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 1

Query: 3  ILKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          +L++ILAI+LPP+GVFLRY  GVEFWICLLLTILGYIPGIIYA+YVLV
Sbjct: 6  VLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

BLAST of CmaCh04G002680 vs. Swiss-Prot
Match: ESI3_ELYEL (Salt stress-induced hydrophobic peptide ESI3 OS=Elymus elongatus GN=ESI3 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.0e-14
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 1

Query: 3  ILKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          +L++ILAI+LPP+GVFLRY  GVEFWICLLLTILGYIPGIIYA+YVLV
Sbjct: 6  VLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

BLAST of CmaCh04G002680 vs. Swiss-Prot
Match: LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.9e-14
Identity = 38/47 (80.85%), Postives = 45/47 (95.74%), Query Frame = 1

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          +++ILAI+LPP+GVFLRYG  VEFWICLLLT+LGYIPGIIYA+YVLV
Sbjct: 7  IEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVLV 53

BLAST of CmaCh04G002680 vs. Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 3.2e-13
Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 1

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVE 52
          + I++AI+LPPLGVFL++GCG EFWICLLLT LGYIPGIIYAIY + +
Sbjct: 8  IDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55

BLAST of CmaCh04G002680 vs. TrEMBL
Match: A0A0A0KRZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175890 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.3e-15
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          ++IILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV
Sbjct: 7  VEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 53

BLAST of CmaCh04G002680 vs. TrEMBL
Match: Q941D7_ARATH (At2g38901/At2g38901 OS=Arabidopsis thaliana GN=At2g38905 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.3e-15
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          L+IILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV
Sbjct: 7  LEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 53

BLAST of CmaCh04G002680 vs. TrEMBL
Match: D7LCD2_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_482911 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.3e-15
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          L+IILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV
Sbjct: 7  LEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 53

BLAST of CmaCh04G002680 vs. TrEMBL
Match: A0A0D3C522_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.1e-15
Identity = 43/47 (91.49%), Postives = 47/47 (100.00%), Query Frame = 1

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          L++ILAILLPP+GVFLRYGCGVEFWICLLLT+LGYIPGIIYAIYVLV
Sbjct: 7  LEVILAILLPPVGVFLRYGCGVEFWICLLLTVLGYIPGIIYAIYVLV 53

BLAST of CmaCh04G002680 vs. TrEMBL
Match: V4T885_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033283mg PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.1e-15
Identity = 43/47 (91.49%), Postives = 47/47 (100.00%), Query Frame = 1

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          L++ILAILLPP+GVFLRYGCGVEFWICLLLT+LGYIPGIIYAIYVLV
Sbjct: 7  LEVILAILLPPVGVFLRYGCGVEFWICLLLTVLGYIPGIIYAIYVLV 53

BLAST of CmaCh04G002680 vs. TAIR10
Match: AT2G38905.1 (AT2G38905.1 Low temperature and salt responsive protein family)

HSP 1 Score: 87.8 bits (216), Expect = 2.7e-18
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          L+IILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV
Sbjct: 7  LEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 53

BLAST of CmaCh04G002680 vs. TAIR10
Match: AT3G05880.1 (AT3G05880.1 Low temperature and salt responsive protein family)

HSP 1 Score: 82.0 bits (201), Expect = 1.5e-16
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 1

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVE 52
          + II+AILLPPLGVFLR+GCGVEFWICL+LT+LGYIPGIIYAIYVL +
Sbjct: 7  VDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54

BLAST of CmaCh04G002680 vs. TAIR10
Match: AT3G05890.1 (AT3G05890.1 Low temperature and salt responsive protein family)

HSP 1 Score: 73.9 bits (180), Expect = 4.0e-14
Identity = 32/48 (66.67%), Postives = 45/48 (93.75%), Query Frame = 1

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVE 52
          ++IILAI+LPPLGVFL++GC VEFWICL+LT+ GY+PGI+YA+Y++ +
Sbjct: 7  VEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54

BLAST of CmaCh04G002680 vs. TAIR10
Match: AT1G57550.1 (AT1G57550.1 Low temperature and salt responsive protein family)

HSP 1 Score: 69.3 bits (168), Expect = 9.9e-13
Identity = 31/48 (64.58%), Postives = 42/48 (87.50%), Query Frame = 1

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVE 52
          L+++ AI +PP+GVFLRYG G+EFW+CLLLT+  +IPG+IYAIYVL +
Sbjct: 5  LEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52

BLAST of CmaCh04G002680 vs. TAIR10
Match: AT4G30660.1 (AT4G30660.1 Low temperature and salt responsive protein family)

HSP 1 Score: 63.5 bits (153), Expect = 5.5e-11
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 1

Query: 3  ILKIILAILLPPLGVFLRYGC-GVEFWICLLLTILGYIPGIIYAIYVLV 51
          + +II+AILLPPLGV  R GC  VEF ICL+LTILGY+PGIIYAIYV+V
Sbjct: 8  LCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIV 56

BLAST of CmaCh04G002680 vs. NCBI nr
Match: gi|700195289|gb|KGN50466.1| (hypothetical protein Csa_5G175890 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 7.7e-15
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          ++IILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV
Sbjct: 7  VEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 53

BLAST of CmaCh04G002680 vs. NCBI nr
Match: gi|18404892|ref|NP_565897.1| (Low temperature and salt responsive protein [Arabidopsis thaliana])

HSP 1 Score: 87.8 bits (216), Expect = 7.7e-15
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          L+IILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV
Sbjct: 7  LEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 53

BLAST of CmaCh04G002680 vs. NCBI nr
Match: gi|778700767|ref|XP_004143609.2| (PREDICTED: uncharacterized protein LOC101203086 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 7.7e-15
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1

Query: 4   LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
           ++IILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV
Sbjct: 70  VEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 116

BLAST of CmaCh04G002680 vs. NCBI nr
Match: gi|567887380|ref|XP_006436212.1| (hypothetical protein CICLE_v10033283mg [Citrus clementina])

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-14
Identity = 43/47 (91.49%), Postives = 47/47 (100.00%), Query Frame = 1

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          L++ILAILLPP+GVFLRYGCGVEFWICLLLT+LGYIPGIIYAIYVLV
Sbjct: 7  LEVILAILLPPVGVFLRYGCGVEFWICLLLTVLGYIPGIIYAIYVLV 53

BLAST of CmaCh04G002680 vs. NCBI nr
Match: gi|685302127|ref|XP_009141770.1| (PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Brassica rapa])

HSP 1 Score: 87.0 bits (214), Expect = 1.3e-14
Identity = 43/47 (91.49%), Postives = 47/47 (100.00%), Query Frame = 1

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          L++ILAILLPP+GVFLRYGCGVEFWICLLLT+LGYIPGIIYAIYVLV
Sbjct: 7  LEVILAILLPPVGVFLRYGCGVEFWICLLLTVLGYIPGIIYAIYVLV 53

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RCI2A_ARATH2.6e-1583.33Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1[more]
LT01_HORVU1.0e-1483.33Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1[more]
ESI3_ELYEL1.0e-1483.33Salt stress-induced hydrophobic peptide ESI3 OS=Elymus elongatus GN=ESI3 PE=2 SV... [more]
LT02_HORVU2.9e-1480.85Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1[more]
LTI6B_ORYSI3.2e-1372.92Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0KRZ2_CUCSA5.3e-1595.74Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175890 PE=4 SV=1[more]
Q941D7_ARATH5.3e-1595.74At2g38901/At2g38901 OS=Arabidopsis thaliana GN=At2g38905 PE=2 SV=1[more]
D7LCD2_ARALL5.3e-1595.74Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
A0A0D3C522_BRAOL9.1e-1591.49Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
V4T885_9ROSI9.1e-1591.49Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033283mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G38905.12.7e-1895.74 Low temperature and salt responsive protein family[more]
AT3G05880.11.5e-1683.33 Low temperature and salt responsive protein family[more]
AT3G05890.14.0e-1466.67 Low temperature and salt responsive protein family[more]
AT1G57550.19.9e-1364.58 Low temperature and salt responsive protein family[more]
AT4G30660.15.5e-1173.47 Low temperature and salt responsive protein family[more]
Match NameE-valueIdentityDescription
gi|700195289|gb|KGN50466.1|7.7e-1595.74hypothetical protein Csa_5G175890 [Cucumis sativus][more]
gi|18404892|ref|NP_565897.1|7.7e-1595.74Low temperature and salt responsive protein [Arabidopsis thaliana][more]
gi|778700767|ref|XP_004143609.2|7.7e-1595.74PREDICTED: uncharacterized protein LOC101203086 [Cucumis sativus][more]
gi|567887380|ref|XP_006436212.1|1.3e-1491.49hypothetical protein CICLE_v10033283mg [Citrus clementina][more]
gi|685302127|ref|XP_009141770.1|1.3e-1491.49PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Brassica rapa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000612PMP3
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0031410 cytoplasmic vesicle
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G002680.1CmaCh04G002680.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000612Proteolipid membrane potential modulatorPANTHERPTHR21659HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATEDcoord: 1..50
score: 3.2
IPR000612Proteolipid membrane potential modulatorPFAMPF01679Pmp3coord: 2..50
score: 9.6
IPR000612Proteolipid membrane potential modulatorPROSITEPS01309UPF0057coord: 7..22
scor

The following gene(s) are paralogous to this gene:

None