Cp4.1LG01g04360 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g04360
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionLow temperature and salt responsive protein family
LocationCp4.1LG01 : 1330962 .. 1331463 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACAGAGAGAGAATTATGGGTTCTGAAACTTTTGTAGAAATCATATTAGCAATTCTTCTTCCACCACTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTGATGTCTCAATTCTTCTCTCCAAATTCTGTTTTCATTTTACAATATTTCTCTGTCTTTTCTTTCAAATTGTTTTTCTGATTGTGTTCTTGTTTTTGATTTGCAAGTGCAGGTAGAGTTTTGGATTTGTTTGTTGCTGACCATATTGGGATATATCCCTGGAATTATATATGCAATATATGTGCTGGTTGGTTAGAAAAGGAAGAAATTTGAAAGCCTAGTTTTAATGAATGCCTCTTTCTTATTTTGGTTTGTAGAAAGTTTGTGTGTTTATGGCTCTTGGATCTATGTTGTTGTAGAACACTGAATAGATATTATCATTTATTGGCTAGTCCTNAGTTTTGGATTTGTTTGTTGCTGACCATATTGGGATATATCCCTGGAATTATATATGCAATATATGTG

mRNA sequence

AAACAGAGAGAGAATTATGGGTTCTGAAACTTTTGTAGAAATCATATTAGCAATTCTTCTTCCACCACTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTAGAGTTTTGGATTTGTTTGTTGCTGACCATATTGGGATATATCCCTGGAATTATATATGCAATATATGTGCTGTTTTGGATTTGTTTGTTGCTGACCATATTGGGATATATCCCTGGAATTATATATGCAATATATGTG

Coding sequence (CDS)

ATGGGTTCTGAAACTTTTGTAGAAATCATATTAGCAATTCTTCTTCCACCACTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTAGAGTTTTGGATTTGTTTGTTGCTGACCATATTGGGATATATCCCTGGAATTATATATGCAATATATGTGCTGTTTTGGATTTGTTTGTTGCTGACCATATTGGGATATATCCCTGGAATTATATATGCAATATATGTG

Protein sequence

MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLFWICLLLTILGYIPGIIYAIYV
BLAST of Cp4.1LG01g04360 vs. Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.8e-18
Identity = 44/52 (84.62%), Postives = 50/52 (96.15%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          M + TFV+II+AILLPPLGVFLR+GCGVEFWICL+LT+LGYIPGIIYAIYVL
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVL 52

BLAST of Cp4.1LG01g04360 vs. Swiss-Prot
Match: LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.1e-17
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          M S TF+E+ILAI+LPP+GVFLRYG  VEFWICLLLT+LGYIPGIIYA+YVL
Sbjct: 1  MASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVL 52

BLAST of Cp4.1LG01g04360 vs. Swiss-Prot
Match: LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.0e-17
Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          MGS T +E+ILAI+LPP+GVFLRY  GVEFWICLLLTILGYIPGIIYA+YVL
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52

BLAST of Cp4.1LG01g04360 vs. Swiss-Prot
Match: ESI3_ELYEL (Salt stress-induced hydrophobic peptide ESI3 OS=Elymus elongatus GN=ESI3 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.0e-17
Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          MGS T +E+ILAI+LPP+GVFLRY  GVEFWICLLLTILGYIPGIIYA+YVL
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52

BLAST of Cp4.1LG01g04360 vs. Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.9e-16
Identity = 37/52 (71.15%), Postives = 48/52 (92.31%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          M + TFVEIILAI+LPPLGVFL++GC VEFWICL+LT+ GY+PGI+YA+Y++
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYII 52

BLAST of Cp4.1LG01g04360 vs. TrEMBL
Match: A0A0A0KRZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175890 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 52

BLAST of Cp4.1LG01g04360 vs. TrEMBL
Match: D7LCD2_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_482911 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.8e-19
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          MGSETF+EIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 52

BLAST of Cp4.1LG01g04360 vs. TrEMBL
Match: Q941D7_ARATH (At2g38901/At2g38901 OS=Arabidopsis thaliana GN=At2g38905 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.8e-19
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          MGSETF+EIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 52

BLAST of Cp4.1LG01g04360 vs. TrEMBL
Match: A0A067DNL4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038161mg PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-18
Identity = 48/52 (92.31%), Postives = 52/52 (100.00%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          MGSETF+E+ILAILLPP+GVFLRYGCGVEFWICLLLT+LGYIPGIIYAIYVL
Sbjct: 1  MGSETFLEVILAILLPPVGVFLRYGCGVEFWICLLLTVLGYIPGIIYAIYVL 52

BLAST of Cp4.1LG01g04360 vs. TrEMBL
Match: M4DKR4_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-18
Identity = 48/52 (92.31%), Postives = 52/52 (100.00%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          MGSETF+E+ILAILLPP+GVFLRYGCGVEFWICLLLT+LGYIPGIIYAIYVL
Sbjct: 1  MGSETFLEVILAILLPPVGVFLRYGCGVEFWICLLLTVLGYIPGIIYAIYVL 52

BLAST of Cp4.1LG01g04360 vs. TAIR10
Match: AT2G38905.1 (AT2G38905.1 Low temperature and salt responsive protein family)

HSP 1 Score: 100.9 bits (250), Expect = 3.5e-22
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          MGSETF+EIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 52

BLAST of Cp4.1LG01g04360 vs. TAIR10
Match: AT3G05880.1 (AT3G05880.1 Low temperature and salt responsive protein family)

HSP 1 Score: 92.0 bits (227), Expect = 1.6e-19
Identity = 44/52 (84.62%), Postives = 50/52 (96.15%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          M + TFV+II+AILLPPLGVFLR+GCGVEFWICL+LT+LGYIPGIIYAIYVL
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVL 52

BLAST of Cp4.1LG01g04360 vs. TAIR10
Match: AT3G05890.1 (AT3G05890.1 Low temperature and salt responsive protein family)

HSP 1 Score: 84.3 bits (207), Expect = 3.3e-17
Identity = 37/52 (71.15%), Postives = 48/52 (92.31%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          M + TFVEIILAI+LPPLGVFL++GC VEFWICL+LT+ GY+PGI+YA+Y++
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYII 52

BLAST of Cp4.1LG01g04360 vs. TAIR10
Match: AT1G57550.1 (AT1G57550.1 Low temperature and salt responsive protein family)

HSP 1 Score: 73.9 bits (180), Expect = 4.5e-14
Identity = 35/52 (67.31%), Postives = 45/52 (86.54%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          MGS  F+E++ AI +PP+GVFLRYG G+EFW+CLLLT+  +IPG+IYAIYVL
Sbjct: 1  MGS--FLEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVL 50

BLAST of Cp4.1LG01g04360 vs. TAIR10
Match: AT4G30650.1 (AT4G30650.1 Low temperature and salt responsive protein family)

HSP 1 Score: 68.6 bits (166), Expect = 1.9e-12
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1

Query: 4  ETFVEIILAILLPPLGVFLRYGC-GVEFWICLLLTILGYIPGIIYAIYVL 53
          E F EI++AILLPPLGV L+ GC  VEF ICL+LTILGYIPGIIYA+YV+
Sbjct: 6  EVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVI 55

BLAST of Cp4.1LG01g04360 vs. NCBI nr
Match: gi|700195289|gb|KGN50466.1| (hypothetical protein Csa_5G175890 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 52

BLAST of Cp4.1LG01g04360 vs. NCBI nr
Match: gi|778700767|ref|XP_004143609.2| (PREDICTED: uncharacterized protein LOC101203086 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1

Query: 1   MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
           MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
Sbjct: 64  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 115

BLAST of Cp4.1LG01g04360 vs. NCBI nr
Match: gi|659090136|ref|XP_008445856.1| (PREDICTED: low temperature-induced protein lt101.2 [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 3.4e-19
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYV+
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVI 52

BLAST of Cp4.1LG01g04360 vs. NCBI nr
Match: gi|18404892|ref|NP_565897.1| (Low temperature and salt responsive protein [Arabidopsis thaliana])

HSP 1 Score: 100.9 bits (250), Expect = 9.8e-19
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          MGSETF+EIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 52

BLAST of Cp4.1LG01g04360 vs. NCBI nr
Match: gi|567887380|ref|XP_006436212.1| (hypothetical protein CICLE_v10033283mg [Citrus clementina])

HSP 1 Score: 100.1 bits (248), Expect = 1.7e-18
Identity = 48/52 (92.31%), Postives = 52/52 (100.00%), Query Frame = 1

Query: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 53
          MGSETF+E+ILAILLPP+GVFLRYGCGVEFWICLLLT+LGYIPGIIYAIYVL
Sbjct: 1  MGSETFLEVILAILLPPVGVFLRYGCGVEFWICLLLTVLGYIPGIIYAIYVL 52

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RCI2A_ARATH2.8e-1884.62Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1[more]
LT02_HORVU3.1e-1780.77Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1[more]
LT01_HORVU7.0e-1782.69Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1[more]
ESI3_ELYEL7.0e-1782.69Salt stress-induced hydrophobic peptide ESI3 OS=Elymus elongatus GN=ESI3 PE=2 SV... [more]
RCI2B_ARATH5.9e-1671.15Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KRZ2_CUCSA1.4e-19100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175890 PE=4 SV=1[more]
D7LCD2_ARALL6.8e-1996.15Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
Q941D7_ARATH6.8e-1996.15At2g38901/At2g38901 OS=Arabidopsis thaliana GN=At2g38905 PE=2 SV=1[more]
A0A067DNL4_CITSI1.2e-1892.31Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038161mg PE=4 SV=1[more]
M4DKR4_BRARP1.2e-1892.31Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G38905.13.5e-2296.15 Low temperature and salt responsive protein family[more]
AT3G05880.11.6e-1984.62 Low temperature and salt responsive protein family[more]
AT3G05890.13.3e-1771.15 Low temperature and salt responsive protein family[more]
AT1G57550.14.5e-1467.31 Low temperature and salt responsive protein family[more]
AT4G30650.11.9e-1274.00 Low temperature and salt responsive protein family[more]
Match NameE-valueIdentityDescription
gi|700195289|gb|KGN50466.1|2.0e-19100.00hypothetical protein Csa_5G175890 [Cucumis sativus][more]
gi|778700767|ref|XP_004143609.2|2.0e-19100.00PREDICTED: uncharacterized protein LOC101203086 [Cucumis sativus][more]
gi|659090136|ref|XP_008445856.1|3.4e-1998.08PREDICTED: low temperature-induced protein lt101.2 [Cucumis melo][more]
gi|18404892|ref|NP_565897.1|9.8e-1996.15Low temperature and salt responsive protein [Arabidopsis thaliana][more]
gi|567887380|ref|XP_006436212.1|1.7e-1892.31hypothetical protein CICLE_v10033283mg [Citrus clementina][more]
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR000612PMP3
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g04360.1Cp4.1LG01g04360.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000612Proteolipid membrane potential modulatorPANTHERPTHR21659HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATEDcoord: 1..54
score: 4.6
IPR000612Proteolipid membrane potential modulatorPFAMPF01679Pmp3coord: 53..74
score: 4.0E-7coord: 6..52
score: 8.7
IPR000612Proteolipid membrane potential modulatorPROSITEPS01309UPF0057coord: 10..25
scor

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g04360Cp4.1LG08g11180Cucurbita pepo (Zucchini)cpecpeB411