Cp4.1LG08g11180 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g11180
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionLow temperature and salt responsive protein family
LocationCp4.1LG08 : 8401917 .. 8402988 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTCATTATTTTTAAATTAGCGACAAAATTACGCGAATTATAAAATTAATATTCGTCTCAAATCAAATTTAAAACAAAAATAAATAAATTTATATATTTTAATAATTTAGTGTAAAAATGATAAGAAATAATTAAAGGATAAAAAGGTAAAAAGGGAGGTGCTAGAAATTAGGAAGAGGTTTTAAAAGGGGGGCGATGAAGAGGTCTGGGCTCGCGGCGGCTATTAGCTAAGGGCTACGTGAAAATGCAAGGCGAACGAATCCCAAAGCGAATGGGCTCAGCCACCTTCGTAGAAGTTCTTATCGCTATCTTCATCCCTCCCCTCGGCGTCTTCCTCCGCTATGGCATTGGGGTAATGTCCTCTCCCTCTCTCGTTTCAATTCGTTCCGGAATTTGATCCGAATTCAAACCTCTGATATCTTGATCGATCCATCTGATCTATGTTCGTTCGAACAACATTTTAATTAATTAATTAATTAATTAATTTTGTTGTATAAAATTTGCAGGTAGAATTTTGGATTGATTTGGTGCTCACATTTTTGGGATACCTTCCTGGAATTATTTACGCCGTTTATGTTTTGGTGGGGATGTGATGAAAAAAATATTGTTTTTTTATTTTTTTTATTTTTTTATTTTTTTATTTGCTGCTTTTGAGATTTTTTTTTTTTTTTTTTTATTTTAATTTTCTGTTATTTTCCTATTCTCGAGCCTGCAAACCCTGCTACTGCCATGGCTTATCTGGATGGAATCCATCTTTTTAGGGGTCTAGACCATTTGGTAGTTGTGAGATATAGGATTTATTTTTTATTTTTTTAATTTGGAATGTAAAAAAAGAAATTGAGATGAAATTAATGTAACTCCGATTTTTAGGTTGGAAATTTATTTATATACCCTTCTGATCATAACTGTTTTGAATTTAACCTTTCAATTTTGTTGAGGTTACAAAAGTAATTTATTAACTTTAATATCTCCTGATATTTTGCTTCTGTTTTCAGTAATATTTCTGGTGAAATTTACCATTTTAGCCTTGGCTCTATTTTTGGGGAAAAAATAAATCGTCTTTTAATC

mRNA sequence

ATGACAGGTCTGGGCTCGCGGCGGCTATTAGCTAAGGGCTACGTGAAAATGCAAGGCGAACGAATCCCAAAGCGAATGGGCTCAGCCACCTTCGTAGAAGTTCTTATCGCTATCTTCATCCCTCCCCTCGGCGTCTTCCTCCGCTATGGCATTGGGGTAGAATTTTGGATTGATTTGGTGCTCACATTTTTGGGATACCTTCCTGGAATTATTTACGCCGTTTATGTTTTGGTGGGGATGTGATGAAAAAAATATTGTTTTTTTATTTTTTTTATTTTTTTATTTTTTTATTTGCTGCTTTTGAGATTTTTTTTTTTTTTTTTTTATTTTAATTTTCTGTTATTTTCCTATTCTCGAGCCTGCAAACCCTGCTACTGCCATGGCTTATCTGGATGGAATCCATCTTTTTAGGGGTCTAGACCATTTGGTAGTTGTGAGATATAGGATTTATTTTTTATTTTTTTAATTTGGAATGTAAAAAAAGAAATTGAGATGAAATTAATGTAACTCCGATTTTTAGGTTGGAAATTTATTTATATACCCTTCTGATCATAACTGTTTTGAATTTAACCTTTCAATTTTGTTGAGGTTACAAAAGTAATTTATTAACTTTAATATCTCCTGATATTTTGCTTCTGTTTTCAGTAATATTTCTGGTGAAATTTACCATTTTAGCCTTGGCTCTATTTTTGGGGAAAAAATAAATCGTCTTTTAATC

Coding sequence (CDS)

ATGACAGGTCTGGGCTCGCGGCGGCTATTAGCTAAGGGCTACGTGAAAATGCAAGGCGAACGAATCCCAAAGCGAATGGGCTCAGCCACCTTCGTAGAAGTTCTTATCGCTATCTTCATCCCTCCCCTCGGCGTCTTCCTCCGCTATGGCATTGGGGTAGAATTTTGGATTGATTTGGTGCTCACATTTTTGGGATACCTTCCTGGAATTATTTACGCCGTTTATGTTTTGGTGGGGATGTGA

Protein sequence

MTGLGSRRLLAKGYVKMQGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLVGM
Homology
[Close]
BLAST of Cp4.1LG08g11180 vs. Swiss-Prot
Match: LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.4e-16
Identity = 40/53 (75.47%), Postives = 48/53 (90.57%), Query Frame = 1 

Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLV 79
          M SATF+EV++AI +PP+GVFLRYG+ VEFWI L+LT LGY+PGIIYAVYVLV
Sbjct: 1  MASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVLV 53

[Close]
BLAST of Cp4.1LG08g11180 vs. Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.9e-15
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 1 

Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVL 78
          M +ATFV+++IAI +PPLGVFLR+G GVEFWI LVLT LGY+PGIIYA+YVL
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVL 52

[Close]
BLAST of Cp4.1LG08g11180 vs. Swiss-Prot
Match: LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.2e-15
Identity = 40/53 (75.47%), Postives = 48/53 (90.57%), Query Frame = 1 

Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLV 79
          MGSAT +EV++AI +PP+GVFLRY +GVEFWI L+LT LGY+PGIIYAVYVLV
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

[Close]
BLAST of Cp4.1LG08g11180 vs. Swiss-Prot
Match: ESI3_ELYEL (Salt stress-induced hydrophobic peptide ESI3 OS=Elymus elongatus GN=ESI3 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.2e-15
Identity = 40/53 (75.47%), Postives = 48/53 (90.57%), Query Frame = 1 

Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLV 79
          MGSAT +EV++AI +PP+GVFLRY +GVEFWI L+LT LGY+PGIIYAVYVLV
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

[Close]
BLAST of Cp4.1LG08g11180 vs. Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.9e-13
Identity = 33/52 (63.46%), Postives = 45/52 (86.54%), Query Frame = 1 

Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVL 78
          M +ATFVE+++AI +PPLGVFL++G  VEFWI L+LT  GYLPGI+YA+Y++
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYII 52

[Close]
BLAST of Cp4.1LG08g11180 vs. TrEMBL
Match: A0A0A0LAU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G736860 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.5e-22
Identity = 53/62 (85.48%), Postives = 60/62 (96.77%), Query Frame = 1 

Query: 18 QGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVL 77
          Q +RIPKRMGSATF+EVL+AIFIPP+GVFLRYGIG+EFWIDLVLTF GY+PGIIYAVYVL
Sbjct: 6  QVDRIPKRMGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYIPGIIYAVYVL 65

Query: 78 VG 80
          +G
Sbjct: 66 IG 67

[Close]
BLAST of Cp4.1LG08g11180 vs. TrEMBL
Match: M0THT6_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-16
Identity = 44/54 (81.48%), Postives = 52/54 (96.30%), Query Frame = 1 

Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLVG 80
          MGSATF+EV++AI +PP+GVFLRYGIGVEFWIDL+LT LGY+PGIIYA+YVLVG
Sbjct: 1  MGSATFLEVILAILLPPVGVFLRYGIGVEFWIDLLLTILGYIPGIIYALYVLVG 54

[Close]
BLAST of Cp4.1LG08g11180 vs. TrEMBL
Match: A0A0E0GKY9_ORYNI (Uncharacterized protein OS=Oryza nivara PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.5e-16
Identity = 43/53 (81.13%), Postives = 51/53 (96.23%), Query Frame = 1 

Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLV 79
          M SATF+EVL+AIF+PP+GVFLRYG+G+EFWIDL+LT LGY+PGIIYAVYVLV
Sbjct: 1  MASATFLEVLLAIFLPPVGVFLRYGLGIEFWIDLLLTILGYIPGIIYAVYVLV 53

[Close]
BLAST of Cp4.1LG08g11180 vs. TrEMBL
Match: A2XFD8_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_11082 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.5e-16
Identity = 43/53 (81.13%), Postives = 51/53 (96.23%), Query Frame = 1 

Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLV 79
          M SATF+EVL+AIF+PP+GVFLRYG+G+EFWIDL+LT LGY+PGIIYAVYVLV
Sbjct: 1  MASATFLEVLLAIFLPPVGVFLRYGLGIEFWIDLLLTILGYIPGIIYAVYVLV 53

[Close]
BLAST of Cp4.1LG08g11180 vs. TrEMBL
Match: A0A072U7E3_MEDTR (Low temperature and salt responsive family protein OS=Medicago truncatula GN=MTR_6g033495 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.5e-16
Identity = 43/54 (79.63%), Postives = 50/54 (92.59%), Query Frame = 1 

Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLVG 80
          MGS TFVEV++AI +PP+GVFLRYG GVEFWID+VLT LGY+PGIIYA+YVLVG
Sbjct: 1  MGSETFVEVILAILLPPIGVFLRYGCGVEFWIDVVLTLLGYIPGIIYAIYVLVG 54

[Close]
BLAST of Cp4.1LG08g11180 vs. TAIR10
Match: AT2G38905.1 (AT2G38905.1 Low temperature and salt responsive protein family)

HSP 1 Score: 86.3 bits (212), Expect = 9.5e-18
Identity = 40/54 (74.07%), Postives = 49/54 (90.74%), Query Frame = 1 

Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLVG 80
          MGS TF+E+++AI +PP+GVFLRYG GVEFWI L+LT LGY+PGIIYA+YVLVG
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]
BLAST of Cp4.1LG08g11180 vs. TAIR10
Match: AT3G05880.1 (AT3G05880.1 Low temperature and salt responsive protein family)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-16
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 1 

Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVL 78
          M +ATFV+++IAI +PPLGVFLR+G GVEFWI LVLT LGY+PGIIYA+YVL
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVL 52

[Close]
BLAST of Cp4.1LG08g11180 vs. TAIR10
Match: AT3G05890.1 (AT3G05890.1 Low temperature and salt responsive protein family)

HSP 1 Score: 75.1 bits (183), Expect = 2.2e-14
Identity = 33/52 (63.46%), Postives = 45/52 (86.54%), Query Frame = 1 

Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVL 78
          M +ATFVE+++AI +PPLGVFL++G  VEFWI L+LT  GYLPGI+YA+Y++
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYII 52

[Close]
BLAST of Cp4.1LG08g11180 vs. TAIR10
Match: AT1G57550.1 (AT1G57550.1 Low temperature and salt responsive protein family)

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-13
Identity = 35/52 (67.31%), Postives = 45/52 (86.54%), Query Frame = 1 

Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVL 78
          MGS  F+EVL AIFIPP+GVFLRYG+G+EFW+ L+LT   ++PG+IYA+YVL
Sbjct: 1  MGS--FLEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVL 50

[Close]
BLAST of Cp4.1LG08g11180 vs. TAIR10
Match: AT4G30650.1 (AT4G30650.1 Low temperature and salt responsive protein family)

HSP 1 Score: 57.0 bits (136), Expect = 6.2e-09
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 1 

Query: 31 FVEVLIAIFIPPLGVFLRYGI-GVEFWIDLVLTFLGYLPGIIYAVYVLV 79
          F E+LIAI +PPLGV L+ G   VEF I LVLT LGY+PGIIYA+YV+V
Sbjct: 8  FCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIV 56

[Close]
BLAST of Cp4.1LG08g11180 vs. NCBI nr
Match: gi|449440069|ref|XP_004137807.1| (PREDICTED: low temperature-induced protein lt101.2-like [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 3.5e-22
Identity = 53/62 (85.48%), Postives = 60/62 (96.77%), Query Frame = 1 

Query: 18 QGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVL 77
          Q +RIPKRMGSATF+EVL+AIFIPP+GVFLRYGIG+EFWIDLVLTF GY+PGIIYAVYVL
Sbjct: 6  QVDRIPKRMGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYIPGIIYAVYVL 65

Query: 78 VG 80
          +G
Sbjct: 66 IG 67

[Close]
BLAST of Cp4.1LG08g11180 vs. NCBI nr
Match: gi|659083994|ref|XP_008442650.1| (PREDICTED: low temperature-induced protein lt101.2-like [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 3.5e-22
Identity = 53/62 (85.48%), Postives = 60/62 (96.77%), Query Frame = 1 

Query: 18 QGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVL 77
          Q +RIPKRMGSATFVEVL+AIFIPP+GVFLRYGIG+EFWIDLVLTF GY+PGI+YAVYVL
Sbjct: 6  QVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYIPGIVYAVYVL 65

Query: 78 VG 80
          +G
Sbjct: 66 IG 67

[Close]
BLAST of Cp4.1LG08g11180 vs. NCBI nr
Match: gi|695043695|ref|XP_009409551.1| (PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 93.2 bits (230), Expect = 2.2e-16
Identity = 44/54 (81.48%), Postives = 52/54 (96.30%), Query Frame = 1 

Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLVG 80
          MGSATF+EV++AI +PP+GVFLRYGIGVEFWIDL+LT LGY+PGIIYA+YVLVG
Sbjct: 1  MGSATFLEVILAILLPPVGVFLRYGIGVEFWIDLLLTILGYIPGIIYALYVLVG 54

[Close]
BLAST of Cp4.1LG08g11180 vs. NCBI nr
Match: gi|1002257790|ref|XP_015633211.1| (PREDICTED: low temperature-induced protein lt101.2 [Oryza sativa Japonica Group])

HSP 1 Score: 91.7 bits (226), Expect = 6.4e-16
Identity = 43/53 (81.13%), Postives = 51/53 (96.23%), Query Frame = 1 

Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLV 79
          M SATF+EVL+AIF+PP+GVFLRYG+G+EFWIDL+LT LGY+PGIIYAVYVLV
Sbjct: 1  MASATFLEVLLAIFLPPVGVFLRYGLGIEFWIDLLLTILGYIPGIIYAVYVLV 53

[Close]
BLAST of Cp4.1LG08g11180 vs. NCBI nr
Match: gi|922351669|ref|XP_013451651.1| (low temperature and salt responsive family protein [Medicago truncatula])

HSP 1 Score: 91.7 bits (226), Expect = 6.4e-16
Identity = 43/54 (79.63%), Postives = 50/54 (92.59%), Query Frame = 1 

Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLVG 80
          MGS TFVEV++AI +PP+GVFLRYG GVEFWID+VLT LGY+PGIIYA+YVLVG
Sbjct: 1  MGSETFVEVILAILLPPIGVFLRYGCGVEFWIDVVLTLLGYIPGIIYAIYVLVG 54

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g11180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LT02_HORVU8.4e-1675.47Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1[more]
RCI2A_ARATH1.9e-1575.00Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1[more]
LT01_HORVU3.2e-1575.47Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1[more]
ESI3_ELYEL3.2e-1575.47Salt stress-induced hydrophobic peptide ESI3 OS=Elymus elongatus GN=ESI3 PE=2 SV... [more]
RCI2B_ARATH3.9e-1363.46Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1[more]
BLAST of Cp4.1LG08g11180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAU7_CUCSA2.5e-2285.48Uncharacterized protein OS=Cucumis sativus GN=Csa_3G736860 PE=4 SV=1[more]
M0THT6_MUSAM1.5e-1681.48Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
A0A0E0GKY9_ORYNI4.5e-1681.13Uncharacterized protein OS=Oryza nivara PE=4 SV=1[more]
A2XFD8_ORYSI4.5e-1681.13Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_11082 PE=4... [more]
A0A072U7E3_MEDTR4.5e-1679.63Low temperature and salt responsive family protein OS=Medicago truncatula GN=MTR... [more]
BLAST of Cp4.1LG08g11180 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G38905.19.5e-1874.07 Low temperature and salt responsive protein family[more]
AT3G05880.11.1e-1675.00 Low temperature and salt responsive protein family[more]
AT3G05890.12.2e-1463.46 Low temperature and salt responsive protein family[more]
AT1G57550.11.4e-1367.31 Low temperature and salt responsive protein family[more]
AT4G30650.16.2e-0967.35 Low temperature and salt responsive protein family[more]
BLAST of Cp4.1LG08g11180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449440069|ref|XP_004137807.1|3.5e-2285.48PREDICTED: low temperature-induced protein lt101.2-like [Cucumis sativus][more]
gi|659083994|ref|XP_008442650.1|3.5e-2285.48PREDICTED: low temperature-induced protein lt101.2-like [Cucumis melo][more]
gi|695043695|ref|XP_009409551.1|2.2e-1681.48PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Musa acuminata subsp. m... [more]
gi|1002257790|ref|XP_015633211.1|6.4e-1681.13PREDICTED: low temperature-induced protein lt101.2 [Oryza sativa Japonica Group][more]
gi|922351669|ref|XP_013451651.1|6.4e-1679.63low temperature and salt responsive family protein [Medicago truncatula][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR000612PMP3
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g11180.1Cp4.1LG08g11180.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000612Proteolipid membrane potential modulatorPANTHERPTHR21659HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATEDcoord: 4..78
score: 5.0
IPR000612Proteolipid membrane potential modulatorPFAMPF01679Pmp3coord: 31..77
score: 1.1
IPR000612Proteolipid membrane potential modulatorPROSITEPS01309UPF0057coord: 35..50
scor
NoneNo IPR availablePANTHERPTHR21659:SF23SUBFAMILY NOT NAMEDcoord: 4..78
score: 5.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g11180Cucsa.307130Cucumber (Gy14) v1cgycpeB0802
Cp4.1LG08g11180CmaCh06G003570Cucurbita maxima (Rimu)cmacpeB852
Cp4.1LG08g11180CmoCh06G003510Cucurbita moschata (Rifu)cmocpeB797
Cp4.1LG08g11180Csa3G736860Cucumber (Chinese Long) v2cpecuB860
Cp4.1LG08g11180ClCG02G013890Watermelon (Charleston Gray)cpewcgB783
Cp4.1LG08g11180MELO3C031017.2Melon (DHL92) v3.6.1cpemedB937
Cp4.1LG08g11180CsaV3_3G035580Cucumber (Chinese Long) v3cpecucB1057
Cp4.1LG08g11180CsaV3_5G006260Cucumber (Chinese Long) v3cpecucB1069
Cp4.1LG08g11180Carg01002Silver-seed gourdcarcpeB0233
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG08g11180Cp4.1LG01g04360Cucurbita pepo (Zucchini)cpecpeB411
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g11180Melon (DHL92) v3.6.1cpemedB934
Cp4.1LG08g11180Melon (DHL92) v3.6.1cpemedB947
Cp4.1LG08g11180Silver-seed gourdcarcpeB0430
Cp4.1LG08g11180Silver-seed gourdcarcpeB0778
Cp4.1LG08g11180Cucumber (Chinese Long) v3cpecucB1067
Cp4.1LG08g11180Wax gourdcpewgoB1073
Cp4.1LG08g11180Wax gourdcpewgoB1123
Cp4.1LG08g11180Wax gourdcpewgoB1125
Cp4.1LG08g11180Wax gourdcpewgoB1133
Cp4.1LG08g11180Cucurbita pepo (Zucchini)cpecpeB107
Cp4.1LG08g11180Cucurbita pepo (Zucchini)cpecpeB487
Cp4.1LG08g11180Cucurbita pepo (Zucchini)cpecpeB325
Cp4.1LG08g11180Cucurbita pepo (Zucchini)cpecpeB407
Cp4.1LG08g11180Cucurbita pepo (Zucchini)cpecpeB429
Cp4.1LG08g11180Cucurbita maxima (Rimu)cmacpeB296
Cp4.1LG08g11180Cucurbita maxima (Rimu)cmacpeB690
Cp4.1LG08g11180Cucurbita maxima (Rimu)cmacpeB893
Cp4.1LG08g11180Cucurbita moschata (Rifu)cmocpeB259
Cp4.1LG08g11180Cucurbita moschata (Rifu)cmocpeB642
Cp4.1LG08g11180Cucurbita moschata (Rifu)cmocpeB832
Cp4.1LG08g11180Wild cucumber (PI 183967)cpecpiB862
Cp4.1LG08g11180Cucumber (Chinese Long) v2cpecuB871
Cp4.1LG08g11180Bottle gourd (USVL1VR-Ls)cpelsiB702
Cp4.1LG08g11180Bottle gourd (USVL1VR-Ls)cpelsiB707
Cp4.1LG08g11180Watermelon (Charleston Gray)cpewcgB765
Cp4.1LG08g11180Watermelon (Charleston Gray)cpewcgB784
Cp4.1LG08g11180Watermelon (97103) v1cpewmB827
Cp4.1LG08g11180Watermelon (97103) v1cpewmB848
Cp4.1LG08g11180Watermelon (97103) v1cpewmB850
Cp4.1LG08g11180Melon (DHL92) v3.5.1cpemeB796
Cp4.1LG08g11180Melon (DHL92) v3.5.1cpemeB807
Cp4.1LG08g11180Cucumber (Gy14) v2cgybcpeB455
Cp4.1LG08g11180Cucumber (Gy14) v2cgybcpeB577