Cp4.1LG08g11180.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g11180.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Low temperature and salt responsive protein family
Location	Cp4.1LG08 : 8401917 .. 8402988 (+)
Sequence length	718

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTCATTATTTTTAAATTAGCGACAAAATTACGCGAATTATAAAATTAATATTCGTCTCAAATCAAATTTAAAACAAAAATAAATAAATTTATATATTTTAATAATTTAGTGTAAAAATGATAAGAAATAATTAAAGGATAAAAAGGTAAAAAGGGAGGTGCTAGAAATTAGGAAGAGGTTTTAAAAGGGGGGCGATGAAGAGGTCTGGGCTCGCGGCGGCTATTAGCTAAGGGCTACGTGAAAATGCAAGGCGAACGAATCCCAAAGCGAATGGGCTCAGCCACCTTCGTAGAAGTTCTTATCGCTATCTTCATCCCTCCCCTCGGCGTCTTCCTCCGCTATGGCATTGGGGTAATGTCCTCTCCCTCTCTCGTTTCAATTCGTTCCGGAATTTGATCCGAATTCAAACCTCTGATATCTTGATCGATCCATCTGATCTATGTTCGTTCGAACAACATTTTAATTAATTAATTAATTAATTAATTTTGTTGTATAAAATTTGCAGGTAGAATTTTGGATTGATTTGGTGCTCACATTTTTGGGATACCTTCCTGGAATTATTTACGCCGTTTATGTTTTGGTGGGGATGTGATGAAAAAAATATTGTTTTTTTATTTTTTTTATTTTTTTATTTTTTTATTTGCTGCTTTTGAGATTTTTTTTTTTTTTTTTTTATTTTAATTTTCTGTTATTTTCCTATTCTCGAGCCTGCAAACCCTGCTACTGCCATGGCTTATCTGGATGGAATCCATCTTTTTAGGGGTCTAGACCATTTGGTAGTTGTGAGATATAGGATTTATTTTTTATTTTTTTAATTTGGAATGTAAAAAAAGAAATTGAGATGAAATTAATGTAACTCCGATTTTTAGGTTGGAAATTTATTTATATACCCTTCTGATCATAACTGTTTTGAATTTAACCTTTCAATTTTGTTGAGGTTACAAAAGTAATTTATTAACTTTAATATCTCCTGATATTTTGCTTCTGTTTTCAGTAATATTTCTGGTGAAATTTACCATTTTAGCCTTGGCTCTATTTTTGGGGAAAAAATAAATCGTCTTTTAATC

mRNA sequence

ATGACAGGTCTGGGCTCGCGGCGGCTATTAGCTAAGGGCTACGTGAAAATGCAAGGCGAACGAATCCCAAAGCGAATGGGCTCAGCCACCTTCGTAGAAGTTCTTATCGCTATCTTCATCCCTCCCCTCGGCGTCTTCCTCCGCTATGGCATTGGGGTAGAATTTTGGATTGATTTGGTGCTCACATTTTTGGGATACCTTCCTGGAATTATTTACGCCGTTTATGTTTTGGTGGGGATGTGATGAAAAAAATATTGTTTTTTTATTTTTTTTATTTTTTTATTTTTTTATTTGCTGCTTTTGAGATTTTTTTTTTTTTTTTTTTATTTTAATTTTCTGTTATTTTCCTATTCTCGAGCCTGCAAACCCTGCTACTGCCATGGCTTATCTGGATGGAATCCATCTTTTTAGGGGTCTAGACCATTTGGTAGTTGTGAGATATAGGATTTATTTTTTATTTTTTTAATTTGGAATGTAAAAAAAGAAATTGAGATGAAATTAATGTAACTCCGATTTTTAGGTTGGAAATTTATTTATATACCCTTCTGATCATAACTGTTTTGAATTTAACCTTTCAATTTTGTTGAGGTTACAAAAGTAATTTATTAACTTTAATATCTCCTGATATTTTGCTTCTGTTTTCAGTAATATTTCTGGTGAAATTTACCATTTTAGCCTTGGCTCTATTTTTGGGGAAAAAATAAATCGTCTTTTAATC

Coding sequence (CDS)

ATGACAGGTCTGGGCTCGCGGCGGCTATTAGCTAAGGGCTACGTGAAAATGCAAGGCGAACGAATCCCAAAGCGAATGGGCTCAGCCACCTTCGTAGAAGTTCTTATCGCTATCTTCATCCCTCCCCTCGGCGTCTTCCTCCGCTATGGCATTGGGGTAGAATTTTGGATTGATTTGGTGCTCACATTTTTGGGATACCTTCCTGGAATTATTTACGCCGTTTATGTTTTGGTGGGGATGTGA

Protein sequence

MTGLGSRRLLAKGYVKMQGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLVGM

Homology

[Close]

BLAST of Cp4.1LG08g11180.1 vs. Swiss-Prot
Match: LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.4e-16
Identity = 40/53 (75.47%), Postives = 48/53 (90.57%), Query Frame = 1


Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLV 79
          M SATF+EV++AI +PP+GVFLRYG+ VEFWI L+LT LGY+PGIIYAVYVLV
Sbjct: 1  MASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVLV 53

[Close]

BLAST of Cp4.1LG08g11180.1 vs. Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.9e-15
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 1


Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVL 78
          M +ATFV+++IAI +PPLGVFLR+G GVEFWI LVLT LGY+PGIIYA+YVL
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVL 52

[Close]

BLAST of Cp4.1LG08g11180.1 vs. Swiss-Prot
Match: LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.2e-15
Identity = 40/53 (75.47%), Postives = 48/53 (90.57%), Query Frame = 1


Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLV 79
          MGSAT +EV++AI +PP+GVFLRY +GVEFWI L+LT LGY+PGIIYAVYVLV
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

[Close]

BLAST of Cp4.1LG08g11180.1 vs. Swiss-Prot
Match: ESI3_ELYEL (Salt stress-induced hydrophobic peptide ESI3 OS=Elymus elongatus GN=ESI3 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.2e-15
Identity = 40/53 (75.47%), Postives = 48/53 (90.57%), Query Frame = 1


Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLV 79
          MGSAT +EV++AI +PP+GVFLRY +GVEFWI L+LT LGY+PGIIYAVYVLV
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

[Close]

BLAST of Cp4.1LG08g11180.1 vs. Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.9e-13
Identity = 33/52 (63.46%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVL 78
          M +ATFVE+++AI +PPLGVFL++G  VEFWI L+LT  GYLPGI+YA+Y++
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYII 52

[Close]

BLAST of Cp4.1LG08g11180.1 vs. TrEMBL
Match: A0A0A0LAU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G736860 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.5e-22
Identity = 53/62 (85.48%), Postives = 60/62 (96.77%), Query Frame = 1


Query: 18 QGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVL 77
          Q +RIPKRMGSATF+EVL+AIFIPP+GVFLRYGIG+EFWIDLVLTF GY+PGIIYAVYVL
Sbjct: 6  QVDRIPKRMGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYIPGIIYAVYVL 65

Query: 78 VG 80
          +G
Sbjct: 66 IG 67

[Close]

BLAST of Cp4.1LG08g11180.1 vs. TrEMBL
Match: M0THT6_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-16
Identity = 44/54 (81.48%), Postives = 52/54 (96.30%), Query Frame = 1


Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLVG 80
          MGSATF+EV++AI +PP+GVFLRYGIGVEFWIDL+LT LGY+PGIIYA+YVLVG
Sbjct: 1  MGSATFLEVILAILLPPVGVFLRYGIGVEFWIDLLLTILGYIPGIIYALYVLVG 54

[Close]

BLAST of Cp4.1LG08g11180.1 vs. TrEMBL
Match: A0A0E0GKY9_ORYNI (Uncharacterized protein OS=Oryza nivara PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.5e-16
Identity = 43/53 (81.13%), Postives = 51/53 (96.23%), Query Frame = 1


Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLV 79
          M SATF+EVL+AIF+PP+GVFLRYG+G+EFWIDL+LT LGY+PGIIYAVYVLV
Sbjct: 1  MASATFLEVLLAIFLPPVGVFLRYGLGIEFWIDLLLTILGYIPGIIYAVYVLV 53

[Close]

BLAST of Cp4.1LG08g11180.1 vs. TrEMBL
Match: A2XFD8_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_11082 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.5e-16
Identity = 43/53 (81.13%), Postives = 51/53 (96.23%), Query Frame = 1


Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLV 79
          M SATF+EVL+AIF+PP+GVFLRYG+G+EFWIDL+LT LGY+PGIIYAVYVLV
Sbjct: 1  MASATFLEVLLAIFLPPVGVFLRYGLGIEFWIDLLLTILGYIPGIIYAVYVLV 53

[Close]

BLAST of Cp4.1LG08g11180.1 vs. TrEMBL
Match: A0A072U7E3_MEDTR (Low temperature and salt responsive family protein OS=Medicago truncatula GN=MTR_6g033495 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.5e-16
Identity = 43/54 (79.63%), Postives = 50/54 (92.59%), Query Frame = 1


Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLVG 80
          MGS TFVEV++AI +PP+GVFLRYG GVEFWID+VLT LGY+PGIIYA+YVLVG
Sbjct: 1  MGSETFVEVILAILLPPIGVFLRYGCGVEFWIDVVLTLLGYIPGIIYAIYVLVG 54

[Close]

BLAST of Cp4.1LG08g11180.1 vs. TAIR10
Match: AT2G38905.1 (AT2G38905.1 Low temperature and salt responsive protein family)

HSP 1 Score: 86.3 bits (212), Expect = 9.5e-18
Identity = 40/54 (74.07%), Postives = 49/54 (90.74%), Query Frame = 1


Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLVG 80
          MGS TF+E+++AI +PP+GVFLRYG GVEFWI L+LT LGY+PGIIYA+YVLVG
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of Cp4.1LG08g11180.1 vs. TAIR10
Match: AT3G05880.1 (AT3G05880.1 Low temperature and salt responsive protein family)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-16
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 1


Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVL 78
          M +ATFV+++IAI +PPLGVFLR+G GVEFWI LVLT LGY+PGIIYA+YVL
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVL 52

[Close]

BLAST of Cp4.1LG08g11180.1 vs. TAIR10
Match: AT3G05890.1 (AT3G05890.1 Low temperature and salt responsive protein family)

HSP 1 Score: 75.1 bits (183), Expect = 2.2e-14
Identity = 33/52 (63.46%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVL 78
          M +ATFVE+++AI +PPLGVFL++G  VEFWI L+LT  GYLPGI+YA+Y++
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYII 52

[Close]

BLAST of Cp4.1LG08g11180.1 vs. TAIR10
Match: AT1G57550.1 (AT1G57550.1 Low temperature and salt responsive protein family)

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-13
Identity = 35/52 (67.31%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVL 78
          MGS  F+EVL AIFIPP+GVFLRYG+G+EFW+ L+LT   ++PG+IYA+YVL
Sbjct: 1  MGS--FLEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVL 50

[Close]

BLAST of Cp4.1LG08g11180.1 vs. TAIR10
Match: AT4G30650.1 (AT4G30650.1 Low temperature and salt responsive protein family)

HSP 1 Score: 57.0 bits (136), Expect = 6.2e-09
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 1


Query: 31 FVEVLIAIFIPPLGVFLRYGI-GVEFWIDLVLTFLGYLPGIIYAVYVLV 79
          F E+LIAI +PPLGV L+ G   VEF I LVLT LGY+PGIIYA+YV+V
Sbjct: 8  FCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIV 56

[Close]

BLAST of Cp4.1LG08g11180.1 vs. NCBI nr
Match: gi|449440069|ref|XP_004137807.1| (PREDICTED: low temperature-induced protein lt101.2-like [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 3.5e-22
Identity = 53/62 (85.48%), Postives = 60/62 (96.77%), Query Frame = 1


Query: 18 QGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVL 77
          Q +RIPKRMGSATF+EVL+AIFIPP+GVFLRYGIG+EFWIDLVLTF GY+PGIIYAVYVL
Sbjct: 6  QVDRIPKRMGSATFIEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYIPGIIYAVYVL 65

Query: 78 VG 80
          +G
Sbjct: 66 IG 67

[Close]

BLAST of Cp4.1LG08g11180.1 vs. NCBI nr
Match: gi|659083994|ref|XP_008442650.1| (PREDICTED: low temperature-induced protein lt101.2-like [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 3.5e-22
Identity = 53/62 (85.48%), Postives = 60/62 (96.77%), Query Frame = 1


Query: 18 QGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVL 77
          Q +RIPKRMGSATFVEVL+AIFIPP+GVFLRYGIG+EFWIDLVLTF GY+PGI+YAVYVL
Sbjct: 6  QVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIGIEFWIDLVLTFFGYIPGIVYAVYVL 65

Query: 78 VG 80
          +G
Sbjct: 66 IG 67

[Close]

BLAST of Cp4.1LG08g11180.1 vs. NCBI nr
Match: gi|695043695|ref|XP_009409551.1| (PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 93.2 bits (230), Expect = 2.2e-16
Identity = 44/54 (81.48%), Postives = 52/54 (96.30%), Query Frame = 1


Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLVG 80
          MGSATF+EV++AI +PP+GVFLRYGIGVEFWIDL+LT LGY+PGIIYA+YVLVG
Sbjct: 1  MGSATFLEVILAILLPPVGVFLRYGIGVEFWIDLLLTILGYIPGIIYALYVLVG 54

[Close]

BLAST of Cp4.1LG08g11180.1 vs. NCBI nr
Match: gi|1002257790|ref|XP_015633211.1| (PREDICTED: low temperature-induced protein lt101.2 [Oryza sativa Japonica Group])

HSP 1 Score: 91.7 bits (226), Expect = 6.4e-16
Identity = 43/53 (81.13%), Postives = 51/53 (96.23%), Query Frame = 1


Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLV 79
          M SATF+EVL+AIF+PP+GVFLRYG+G+EFWIDL+LT LGY+PGIIYAVYVLV
Sbjct: 1  MASATFLEVLLAIFLPPVGVFLRYGLGIEFWIDLLLTILGYIPGIIYAVYVLV 53

[Close]

BLAST of Cp4.1LG08g11180.1 vs. NCBI nr
Match: gi|922351669|ref|XP_013451651.1| (low temperature and salt responsive family protein [Medicago truncatula])

HSP 1 Score: 91.7 bits (226), Expect = 6.4e-16
Identity = 43/54 (79.63%), Postives = 50/54 (92.59%), Query Frame = 1


Query: 26 MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLVG 80
          MGS TFVEV++AI +PP+GVFLRYG GVEFWID+VLT LGY+PGIIYA+YVLVG
Sbjct: 1  MGSETFVEVILAILLPPIGVFLRYGCGVEFWIDVVLTLLGYIPGIIYAIYVLVG 54

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g11180.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LT02_HORVU	8.4e-16	75.47	Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1	[more]
RCI2A_ARATH	1.9e-15	75.00	Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1	[more]
LT01_HORVU	3.2e-15	75.47	Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1	[more]
ESI3_ELYEL	3.2e-15	75.47	Salt stress-induced hydrophobic peptide ESI3 OS=Elymus elongatus GN=ESI3 PE=2 SV...	[more]
RCI2B_ARATH	3.9e-13	63.46	Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1	[more]

BLAST of Cp4.1LG08g11180.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAU7_CUCSA	2.5e-22	85.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G736860 PE=4 SV=1	[more]
M0THT6_MUSAM	1.5e-16	81.48	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
A0A0E0GKY9_ORYNI	4.5e-16	81.13	Uncharacterized protein OS=Oryza nivara PE=4 SV=1	[more]
A2XFD8_ORYSI	4.5e-16	81.13	Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_11082 PE=4...	[more]
A0A072U7E3_MEDTR	4.5e-16	79.63	Low temperature and salt responsive family protein OS=Medicago truncatula GN=MTR...	[more]

BLAST of Cp4.1LG08g11180.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G38905.1	9.5e-18	74.07	Low temperature and salt responsive protein family	[more]
AT3G05880.1	1.1e-16	75.00	Low temperature and salt responsive protein family	[more]
AT3G05890.1	2.2e-14	63.46	Low temperature and salt responsive protein family	[more]
AT1G57550.1	1.4e-13	67.31	Low temperature and salt responsive protein family	[more]
AT4G30650.1	6.2e-09	67.35	Low temperature and salt responsive protein family	[more]

BLAST of Cp4.1LG08g11180.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440069\|ref\|XP_004137807.1\|	3.5e-22	85.48	PREDICTED: low temperature-induced protein lt101.2-like [Cucumis sativus]	[more]
gi\|659083994\|ref\|XP_008442650.1\|	3.5e-22	85.48	PREDICTED: low temperature-induced protein lt101.2-like [Cucumis melo]	[more]
gi\|695043695\|ref\|XP_009409551.1\|	2.2e-16	81.48	PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Musa acuminata subsp. m...	[more]
gi\|1002257790\|ref\|XP_015633211.1\|	6.4e-16	81.13	PREDICTED: low temperature-induced protein lt101.2 [Oryza sativa Japonica Group]	[more]
gi\|922351669\|ref\|XP_013451651.1\|	6.4e-16	79.63	low temperature and salt responsive family protein [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR000612	PMP3

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031410	cytoplasmic vesicle
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG08g11180	Cp4.1LG08g11180	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG08g11180.1:cds:001	Cp4.1LG08g11180.1:cds:001	CDS
Cp4.1LG08g11180.1:cds:002	Cp4.1LG08g11180.1:cds:002	CDS
Cp4.1LG08g11180.1:cds:003	Cp4.1LG08g11180.1:cds:003	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG08g11180.1:three_prime_utr:001	Cp4.1LG08g11180.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG08g11180.1	Cp4.1LG08g11180.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000612	Proteolipid membrane potential modulator	PANTHER	PTHR21659	HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED	coord: 4..78 score: 5.0
IPR000612	Proteolipid membrane potential modulator	PFAM	PF01679	Pmp3	coord: 31..77 score: 1.1
IPR000612	Proteolipid membrane potential modulator	PROSITE	PS01309	UPF0057	coord: 35..50 scor
None	No IPR available	PANTHER	PTHR21659:SF23	SUBFAMILY NOT NAMED	coord: 4..78 score: 5.0