MELO3C031017.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C031017.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionlow temperature-induced protein lt101.2-like
Locationchr04 : 32902625 .. 32903406 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTACATGAACAACAATCTTTGCAATAATATTAACACCGTACAGGTAGTAAATTCTCTGGGATTAAATTACTCTGATTATCGAAATTATTACGTGGTTGTAGGGAAACCCCTCGAGCCTGTAGATAAGTGAGTTAACTAAGTGTAAGGTGTAAGAGGTGAGAAAGTTGAATTAGGAATTTAGTATATTGTTCCCCTACTCTTAAAATTACAAATTTATGTTTTTTTTAATTTTATTTGGGGAGTTTTTTGTATTATATTTTAATTGAGAAAATAACATATTATCATAGTAAACTTTCTATTATTGTAATTTAAGATTTATTAAAGGCAAAAAGAAAAAGATGGAAGGGAAGGAGTAAAAGAAAGAAGTTAAAAAAAGAAGAGAGAAATGAGGAAGTGGTAGTAGAAAATAGGAAGTTCATTTAAAGGCGGCAGTTGAAGAGGTGAGGCGCGGGAGGGAGGGAAGGAGAAAGGGGAAAGTGGAAATGCACGGAGCAGGACAAGTAGATCGAATACCAAAGAGAATGGGTTCGGCCACATTCGTCGAAGTCCTTCTCGCCATCTTCATTCCACCCGTCGGCGTTTTTCTCCGCTATGGCATTGGGGTATTCCTTCCCTTCCTTTCCTTTCCCTTCCCTCTTTCCTCCCTTTTTTCCTTCAATTTCCATCAAATTTAATGTATCTTCAATACTATCCCTTTCGTAACTAAGATTGTAATCATTTTGTTTTTATTATTATTCTAAAAAATTAAGTTTATTTCCATTTTAGGATTATTATTAA

mRNA sequence

ATGATTTACATGAACAACAATCTTTGCAATAATATTAACACCGTACAGGCAAAAAGAAAAAGATGGAAGGGAAGGAGTAAAAGAAAGAAGTTAAAAAAAGAAGAGAGAAATGAGGAAGTGGCGGCAGTTGAAGAGGTGAGGCGCGGGAGGGAGGGAAGGAGAAAGGGGAAAGTGGAAATGCACGGAGCAGGACAAGTAGATCGAATACCAAAGAGAATGGGTTCGGCCACATTCGTCGAAGTCCTTCTCGCCATCTTCATTCCACCCGTCGGCGTTTTTCTCCGCTATGGCATTGGGGATTATTATTAA

Coding sequence (CDS)

ATGATTTACATGAACAACAATCTTTGCAATAATATTAACACCGTACAGGCAAAAAGAAAAAGATGGAAGGGAAGGAGTAAAAGAAAGAAGTTAAAAAAAGAAGAGAGAAATGAGGAAGTGGCGGCAGTTGAAGAGGTGAGGCGCGGGAGGGAGGGAAGGAGAAAGGGGAAAGTGGAAATGCACGGAGCAGGACAAGTAGATCGAATACCAAAGAGAATGGGTTCGGCCACATTCGTCGAAGTCCTTCTCGCCATCTTCATTCCACCCGTCGGCGTTTTTCTCCGCTATGGCATTGGGGATTATTATTAA

Protein sequence

MIYMNNNLCNNINTVQAKRKRWKGRSKRKKLKKEERNEEVAAVEEVRRGREGRRKGKVEMHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIGDYY
Homology
[Close]
BLAST of MELO3C031017.2 vs. NCBI nr
Match: XP_008442650.1 (PREDICTED: low temperature-induced protein lt101.2-like [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 4.3e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 60  MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG 100
           MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG
Sbjct: 1   MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG 40

[Close]
BLAST of MELO3C031017.2 vs. NCBI nr
Match: XP_004137807.1 (PREDICTED: low temperature-induced protein lt101.2-like [Cucumis sativus] >KGN58938.1 hypothetical protein Csa_3G736860 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-11
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 60  MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG 100
           M G GQVDRIPKRMGSATF+EVLLAIFIPPVGVFLRYGIG
Sbjct: 1   MLGGGQVDRIPKRMGSATFIEVLLAIFIPPVGVFLRYGIG 40

[Close]
BLAST of MELO3C031017.2 vs. NCBI nr
Match: XP_022145681.1 (low temperature-induced protein lt101.2-like [Momordica charantia])

HSP 1 Score: 67.0 bits (162), Expect = 4.2e-08
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 65  QVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG 100
           Q DRIPKRMGSATF+EVLLA+FIPP+GVFLRYGIG
Sbjct: 2   QGDRIPKRMGSATFLEVLLAVFIPPLGVFLRYGIG 36

[Close]
BLAST of MELO3C031017.2 vs. NCBI nr
Match: XP_022945600.1 (low temperature-induced protein lt101.2-like [Cucurbita moschata] >XP_023005767.1 low temperature-induced protein lt101.2-like [Cucurbita maxima] >XP_023540674.1 low temperature-induced protein lt101.2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 66.2 bits (160), Expect = 7.2e-08
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 65  QVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG 100
           Q +RIPKRMGSATFVEVL+AIFIPP+GVFLRYGIG
Sbjct: 2   QGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIG 36

[Close]
BLAST of MELO3C031017.2 vs. TAIR10
Match: AT2G38905.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 47.4 bits (111), Expect = 6.2e-06
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 73  MGSATFVEVLLAIFIPPVGVFLRYGIG 100
           MGS TF+E++LAI +PPVGVFLRYG G
Sbjct: 1   MGSETFLEIILAILLPPVGVFLRYGCG 27

[Close]
BLAST of MELO3C031017.2 vs. TAIR10
Match: AT1G57550.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 43.9 bits (102), Expect = 6.9e-05
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 73  MGSATFVEVLLAIFIPPVGVFLRYGIG 100
           MGS  F+EVL AIFIPPVGVFLRYG+G
Sbjct: 1   MGS--FLEVLCAIFIPPVGVFLRYGLG 25

[Close]
BLAST of MELO3C031017.2 vs. TAIR10
Match: AT3G05880.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 42.4 bits (98), Expect = 2.0e-04
Identity = 16/27 (59.26%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 73  MGSATFVEVLLAIFIPPVGVFLRYGIG 100
           M +ATFV++++AI +PP+GVFLR+G G
Sbjct: 1   MSTATFVDIIIAILLPPLGVFLRFGCG 27

[Close]
BLAST of MELO3C031017.2 vs. TAIR10
Match: AT3G05890.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 41.2 bits (95), Expect = 4.5e-04
Identity = 16/25 (64.00%), Postives = 23/25 (92.00%), Query Frame = 0 

Query: 73 MGSATFVEVLLAIFIPPVGVFLRYG 98
          M +ATFVE++LAI +PP+GVFL++G
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFG 25

[Close]
BLAST of MELO3C031017.2 vs. Swiss-Prot
Match: sp|Q9ARD5|LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.9e-04
Identity = 20/26 (76.92%), Postives = 24/26 (92.31%), Query Frame = 0 

Query: 73 MGSATFVEVLLAIFIPPVGVFLRYGI 99
          M SATF+EV+LAI +PPVGVFLRYG+
Sbjct: 1  MASATFIEVILAIILPPVGVFLRYGL 26

[Close]
BLAST of MELO3C031017.2 vs. Swiss-Prot
Match: sp|P68178|ESI3_ELYEL (Salt stress-induced hydrophobic peptide ESI3 OS=Elymus elongatus OX=4588 GN=ESI3 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.6e-04
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 73  MGSATFVEVLLAIFIPPVGVFLRYGIG 100
           MGSAT +EV+LAI +PPVGVFLRY +G
Sbjct: 1   MGSATVLEVILAIILPPVGVFLRYKLG 27

[Close]
BLAST of MELO3C031017.2 vs. Swiss-Prot
Match: sp|P68179|LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.6e-04
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 73  MGSATFVEVLLAIFIPPVGVFLRYGIG 100
           MGSAT +EV+LAI +PPVGVFLRY +G
Sbjct: 1   MGSATVLEVILAIILPPVGVFLRYKLG 27

[Close]
BLAST of MELO3C031017.2 vs. TrEMBL
Match: tr|A0A1S3B667|A0A1S3B667_CUCME (low temperature-induced protein lt101.2-like OS=Cucumis melo OX=3656 GN=LOC103486456 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.9e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 60  MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG 100
           MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG
Sbjct: 1   MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG 40

[Close]
BLAST of MELO3C031017.2 vs. TrEMBL
Match: tr|A0A0A0LAU7|A0A0A0LAU7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736860 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-11
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 60  MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG 100
           M G GQVDRIPKRMGSATF+EVLLAIFIPPVGVFLRYGIG
Sbjct: 1   MLGGGQVDRIPKRMGSATFIEVLLAIFIPPVGVFLRYGIG 40

[Close]
BLAST of MELO3C031017.2 vs. TrEMBL
Match: tr|A0A287ENK3|A0A287ENK3_HORVV (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.1e-04
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 67  DRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG 100
           DR    MGS TFVE+LLAI +PPVGVFLRYGIG
Sbjct: 40  DRNLTAMGSETFVEILLAILLPPVGVFLRYGIG 72

[Close]
BLAST of MELO3C031017.2 vs. TrEMBL
Match: tr|A0A287ENP6|A0A287ENP6_HORVV (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.1e-04
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 67  DRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG 100
           DR    MGS TFVE+LLAI +PPVGVFLRYGIG
Sbjct: 35  DRNLTAMGSETFVEILLAILLPPVGVFLRYGIG 67

The following BLAST results are available for this feature:
BLAST of MELO3C031017.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008442650.14.3e-13100.00PREDICTED: low temperature-induced protein lt101.2-like [Cucumis melo][more]
XP_004137807.13.1e-1192.50PREDICTED: low temperature-induced protein lt101.2-like [Cucumis sativus] >KGN58... [more]
XP_022145681.14.2e-0888.57low temperature-induced protein lt101.2-like [Momordica charantia][more]
XP_022945600.17.2e-0888.57low temperature-induced protein lt101.2-like [Cucurbita moschata] >XP_023005767.... [more]
BLAST of MELO3C031017.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G38905.16.2e-0674.07Low temperature and salt responsive protein family[more]
AT1G57550.16.9e-0581.48Low temperature and salt responsive protein family[more]
AT3G05880.12.0e-0459.26Low temperature and salt responsive protein family[more]
AT3G05890.14.5e-0464.00Low temperature and salt responsive protein family[more]
BLAST of MELO3C031017.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9ARD5|LT02_HORVU1.9e-0476.92Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE... [more]
sp|P68178|ESI3_ELYEL5.6e-0474.07Salt stress-induced hydrophobic peptide ESI3 OS=Elymus elongatus OX=4588 GN=ESI3... [more]
sp|P68179|LT01_HORVU5.6e-0474.07Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE... [more]
BLAST of MELO3C031017.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B667|A0A1S3B667_CUCME2.9e-13100.00low temperature-induced protein lt101.2-like OS=Cucumis melo OX=3656 GN=LOC10348... [more]
tr|A0A0A0LAU7|A0A0A0LAU7_CUCSA2.1e-1192.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736860 PE=4 SV=1[more]
tr|A0A287ENK3|A0A287ENK3_HORVV7.1e-0475.76Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1[more]
tr|A0A287ENP6|A0A287ENP6_HORVV7.1e-0475.76Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR000612PMP3
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0031410 cytoplasmic vesicle
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031017.2.1MELO3C031017.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR21659:SF53SUBFAMILY NOT NAMEDcoord: 73..99
IPR000612Proteolipid membrane potential modulatorPANTHERPTHR21659HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATEDcoord: 73..99
IPR000612Proteolipid membrane potential modulatorPROSITEPS01309UPF0057coord: 82..97

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C031017.2Csa3G736860Cucumber (Chinese Long) v2cumedB209
MELO3C031017.2CmaCh06G003570Cucurbita maxima (Rimu)cmamedB855
MELO3C031017.2CmoCh06G003510Cucurbita moschata (Rifu)cmomedB849
MELO3C031017.2Cp4.1LG08g11180Cucurbita pepo (Zucchini)cpemedB937
MELO3C031017.2Carg01002Silver-seed gourdcarmedB0162
MELO3C031017.2CsaV3_3G035580Cucumber (Chinese Long) v3cucmedB211
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C031017.2Cucurbita pepo (Zucchini)cpemedB678
MELO3C031017.2Cucumber (Gy14) v2cgybmedB185
MELO3C031017.2Cucumber (Gy14) v2cgybmedB246
MELO3C031017.2Cucumber (Gy14) v1cgymedB061
MELO3C031017.2Cucumber (Gy14) v1cgymedB504
MELO3C031017.2Cucurbita maxima (Rimu)cmamedB260
MELO3C031017.2Cucurbita maxima (Rimu)cmamedB597
MELO3C031017.2Cucurbita maxima (Rimu)cmamedB653
MELO3C031017.2Cucurbita maxima (Rimu)cmamedB684
MELO3C031017.2Cucurbita maxima (Rimu)cmamedB891
MELO3C031017.2Cucurbita moschata (Rifu)cmomedB244
MELO3C031017.2Cucurbita moschata (Rifu)cmomedB584
MELO3C031017.2Cucurbita moschata (Rifu)cmomedB641
MELO3C031017.2Cucurbita moschata (Rifu)cmomedB676
MELO3C031017.2Cucurbita moschata (Rifu)cmomedB881
MELO3C031017.2Cucurbita pepo (Zucchini)cpemedB072
MELO3C031017.2Cucurbita pepo (Zucchini)cpemedB322
MELO3C031017.2Cucurbita pepo (Zucchini)cpemedB525
MELO3C031017.2Cucurbita pepo (Zucchini)cpemedB820
MELO3C031017.2Wild cucumber (PI 183967)cpimedB210
MELO3C031017.2Wild cucumber (PI 183967)cpimedB282
MELO3C031017.2Wild cucumber (PI 183967)cpimedB472
MELO3C031017.2Cucumber (Chinese Long) v2cumedB278
MELO3C031017.2Cucumber (Chinese Long) v2cumedB463
MELO3C031017.2Melon (DHL92) v3.6.1medmedB046
MELO3C031017.2Melon (DHL92) v3.6.1medmedB133
MELO3C031017.2Bottle gourd (USVL1VR-Ls)lsimedB072
MELO3C031017.2Bottle gourd (USVL1VR-Ls)lsimedB146
MELO3C031017.2Bottle gourd (USVL1VR-Ls)lsimedB273
MELO3C031017.2Watermelon (Charleston Gray)medwcgB309
MELO3C031017.2Watermelon (Charleston Gray)medwcgB320
MELO3C031017.2Watermelon (Charleston Gray)medwcgB324
MELO3C031017.2Watermelon (97103) v1medwmB344
MELO3C031017.2Watermelon (97103) v1medwmB374
MELO3C031017.2Watermelon (97103) v1medwmB375
MELO3C031017.2Silver-seed gourdcarmedB0319
MELO3C031017.2Silver-seed gourdcarmedB0352
MELO3C031017.2Silver-seed gourdcarmedB0558
MELO3C031017.2Cucumber (Chinese Long) v3cucmedB285
MELO3C031017.2Watermelon (97103) v2medwmbB305
MELO3C031017.2Watermelon (97103) v2medwmbB314
MELO3C031017.2Watermelon (97103) v2medwmbB318
MELO3C031017.2Wax gourdmedwgoB374
MELO3C031017.2Wax gourdmedwgoB419
MELO3C031017.2Wax gourdmedwgoB427