MELO3C031017.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C031017.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionlow temperature-induced protein lt101.2-like
Locationchr04 : 32902625 .. 32903406 (+)
Sequence length309
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTACATGAACAACAATCTTTGCAATAATATTAACACCGTACAGGTAGTAAATTCTCTGGGATTAAATTACTCTGATTATCGAAATTATTACGTGGTTGTAGGGAAACCCCTCGAGCCTGTAGATAAGTGAGTTAACTAAGTGTAAGGTGTAAGAGGTGAGAAAGTTGAATTAGGAATTTAGTATATTGTTCCCCTACTCTTAAAATTACAAATTTATGTTTTTTTTAATTTTATTTGGGGAGTTTTTTGTATTATATTTTAATTGAGAAAATAACATATTATCATAGTAAACTTTCTATTATTGTAATTTAAGATTTATTAAAGGCAAAAAGAAAAAGATGGAAGGGAAGGAGTAAAAGAAAGAAGTTAAAAAAAGAAGAGAGAAATGAGGAAGTGGTAGTAGAAAATAGGAAGTTCATTTAAAGGCGGCAGTTGAAGAGGTGAGGCGCGGGAGGGAGGGAAGGAGAAAGGGGAAAGTGGAAATGCACGGAGCAGGACAAGTAGATCGAATACCAAAGAGAATGGGTTCGGCCACATTCGTCGAAGTCCTTCTCGCCATCTTCATTCCACCCGTCGGCGTTTTTCTCCGCTATGGCATTGGGGTATTCCTTCCCTTCCTTTCCTTTCCCTTCCCTCTTTCCTCCCTTTTTTCCTTCAATTTCCATCAAATTTAATGTATCTTCAATACTATCCCTTTCGTAACTAAGATTGTAATCATTTTGTTTTTATTATTATTCTAAAAAATTAAGTTTATTTCCATTTTAGGATTATTATTAA

mRNA sequence

ATGATTTACATGAACAACAATCTTTGCAATAATATTAACACCGTACAGGCAAAAAGAAAAAGATGGAAGGGAAGGAGTAAAAGAAAGAAGTTAAAAAAAGAAGAGAGAAATGAGGAAGTGGCGGCAGTTGAAGAGGTGAGGCGCGGGAGGGAGGGAAGGAGAAAGGGGAAAGTGGAAATGCACGGAGCAGGACAAGTAGATCGAATACCAAAGAGAATGGGTTCGGCCACATTCGTCGAAGTCCTTCTCGCCATCTTCATTCCACCCGTCGGCGTTTTTCTCCGCTATGGCATTGGGGATTATTATTAA

Coding sequence (CDS)

ATGATTTACATGAACAACAATCTTTGCAATAATATTAACACCGTACAGGCAAAAAGAAAAAGATGGAAGGGAAGGAGTAAAAGAAAGAAGTTAAAAAAAGAAGAGAGAAATGAGGAAGTGGCGGCAGTTGAAGAGGTGAGGCGCGGGAGGGAGGGAAGGAGAAAGGGGAAAGTGGAAATGCACGGAGCAGGACAAGTAGATCGAATACCAAAGAGAATGGGTTCGGCCACATTCGTCGAAGTCCTTCTCGCCATCTTCATTCCACCCGTCGGCGTTTTTCTCCGCTATGGCATTGGGGATTATTATTAA

Protein sequence

MIYMNNNLCNNINTVQAKRKRWKGRSKRKKLKKEERNEEVAAVEEVRRGREGRRKGKVEMHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIGDYY
Homology
[Close]
BLAST of MELO3C031017.2.1 vs. NCBI nr
Match: XP_008442650.1 (PREDICTED: low temperature-induced protein lt101.2-like [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 4.3e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 60  MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG 100
           MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG
Sbjct: 1   MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG 40

[Close]
BLAST of MELO3C031017.2.1 vs. NCBI nr
Match: XP_004137807.1 (PREDICTED: low temperature-induced protein lt101.2-like [Cucumis sativus] >KGN58938.1 hypothetical protein Csa_3G736860 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-11
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 60  MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG 100
           M G GQVDRIPKRMGSATF+EVLLAIFIPPVGVFLRYGIG
Sbjct: 1   MLGGGQVDRIPKRMGSATFIEVLLAIFIPPVGVFLRYGIG 40

[Close]
BLAST of MELO3C031017.2.1 vs. NCBI nr
Match: XP_022145681.1 (low temperature-induced protein lt101.2-like [Momordica charantia])

HSP 1 Score: 67.0 bits (162), Expect = 4.2e-08
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 65  QVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG 100
           Q DRIPKRMGSATF+EVLLA+FIPP+GVFLRYGIG
Sbjct: 2   QGDRIPKRMGSATFLEVLLAVFIPPLGVFLRYGIG 36

[Close]
BLAST of MELO3C031017.2.1 vs. NCBI nr
Match: XP_022945600.1 (low temperature-induced protein lt101.2-like [Cucurbita moschata] >XP_023005767.1 low temperature-induced protein lt101.2-like [Cucurbita maxima] >XP_023540674.1 low temperature-induced protein lt101.2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 66.2 bits (160), Expect = 7.2e-08
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 65  QVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG 100
           Q +RIPKRMGSATFVEVL+AIFIPP+GVFLRYGIG
Sbjct: 2   QGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIG 36

[Close]
BLAST of MELO3C031017.2.1 vs. TAIR10
Match: AT2G38905.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 47.4 bits (111), Expect = 6.2e-06
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 73  MGSATFVEVLLAIFIPPVGVFLRYGIG 100
           MGS TF+E++LAI +PPVGVFLRYG G
Sbjct: 1   MGSETFLEIILAILLPPVGVFLRYGCG 27

[Close]
BLAST of MELO3C031017.2.1 vs. TAIR10
Match: AT1G57550.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 43.9 bits (102), Expect = 6.9e-05
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 73  MGSATFVEVLLAIFIPPVGVFLRYGIG 100
           MGS  F+EVL AIFIPPVGVFLRYG+G
Sbjct: 1   MGS--FLEVLCAIFIPPVGVFLRYGLG 25

[Close]
BLAST of MELO3C031017.2.1 vs. TAIR10
Match: AT3G05880.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 42.4 bits (98), Expect = 2.0e-04
Identity = 16/27 (59.26%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 73  MGSATFVEVLLAIFIPPVGVFLRYGIG 100
           M +ATFV++++AI +PP+GVFLR+G G
Sbjct: 1   MSTATFVDIIIAILLPPLGVFLRFGCG 27

[Close]
BLAST of MELO3C031017.2.1 vs. TAIR10
Match: AT3G05890.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 41.2 bits (95), Expect = 4.5e-04
Identity = 16/25 (64.00%), Postives = 23/25 (92.00%), Query Frame = 0 

Query: 73 MGSATFVEVLLAIFIPPVGVFLRYG 98
          M +ATFVE++LAI +PP+GVFL++G
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFG 25

[Close]
BLAST of MELO3C031017.2.1 vs. Swiss-Prot
Match: sp|Q9ARD5|LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.9e-04
Identity = 20/26 (76.92%), Postives = 24/26 (92.31%), Query Frame = 0 

Query: 73 MGSATFVEVLLAIFIPPVGVFLRYGI 99
          M SATF+EV+LAI +PPVGVFLRYG+
Sbjct: 1  MASATFIEVILAIILPPVGVFLRYGL 26

[Close]
BLAST of MELO3C031017.2.1 vs. Swiss-Prot
Match: sp|P68178|ESI3_ELYEL (Salt stress-induced hydrophobic peptide ESI3 OS=Elymus elongatus OX=4588 GN=ESI3 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.6e-04
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 73  MGSATFVEVLLAIFIPPVGVFLRYGIG 100
           MGSAT +EV+LAI +PPVGVFLRY +G
Sbjct: 1   MGSATVLEVILAIILPPVGVFLRYKLG 27

[Close]
BLAST of MELO3C031017.2.1 vs. Swiss-Prot
Match: sp|P68179|LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.6e-04
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 0 

Query: 73  MGSATFVEVLLAIFIPPVGVFLRYGIG 100
           MGSAT +EV+LAI +PPVGVFLRY +G
Sbjct: 1   MGSATVLEVILAIILPPVGVFLRYKLG 27

[Close]
BLAST of MELO3C031017.2.1 vs. TrEMBL
Match: tr|A0A1S3B667|A0A1S3B667_CUCME (low temperature-induced protein lt101.2-like OS=Cucumis melo OX=3656 GN=LOC103486456 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.9e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 60  MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG 100
           MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG
Sbjct: 1   MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG 40

[Close]
BLAST of MELO3C031017.2.1 vs. TrEMBL
Match: tr|A0A0A0LAU7|A0A0A0LAU7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736860 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-11
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 60  MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG 100
           M G GQVDRIPKRMGSATF+EVLLAIFIPPVGVFLRYGIG
Sbjct: 1   MLGGGQVDRIPKRMGSATFIEVLLAIFIPPVGVFLRYGIG 40

[Close]
BLAST of MELO3C031017.2.1 vs. TrEMBL
Match: tr|A0A287ENK3|A0A287ENK3_HORVV (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.1e-04
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 67  DRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG 100
           DR    MGS TFVE+LLAI +PPVGVFLRYGIG
Sbjct: 40  DRNLTAMGSETFVEILLAILLPPVGVFLRYGIG 72

[Close]
BLAST of MELO3C031017.2.1 vs. TrEMBL
Match: tr|A0A287ENP6|A0A287ENP6_HORVV (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.1e-04
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 67  DRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG 100
           DR    MGS TFVE+LLAI +PPVGVFLRYGIG
Sbjct: 35  DRNLTAMGSETFVEILLAILLPPVGVFLRYGIG 67

The following BLAST results are available for this feature:
BLAST of MELO3C031017.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008442650.14.3e-13100.00PREDICTED: low temperature-induced protein lt101.2-like [Cucumis melo][more]
XP_004137807.13.1e-1192.50PREDICTED: low temperature-induced protein lt101.2-like [Cucumis sativus] >KGN58... [more]
XP_022145681.14.2e-0888.57low temperature-induced protein lt101.2-like [Momordica charantia][more]
XP_022945600.17.2e-0888.57low temperature-induced protein lt101.2-like [Cucurbita moschata] >XP_023005767.... [more]
BLAST of MELO3C031017.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G38905.16.2e-0674.07Low temperature and salt responsive protein family[more]
AT1G57550.16.9e-0581.48Low temperature and salt responsive protein family[more]
AT3G05880.12.0e-0459.26Low temperature and salt responsive protein family[more]
AT3G05890.14.5e-0464.00Low temperature and salt responsive protein family[more]
BLAST of MELO3C031017.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9ARD5|LT02_HORVU1.9e-0476.92Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE... [more]
sp|P68178|ESI3_ELYEL5.6e-0474.07Salt stress-induced hydrophobic peptide ESI3 OS=Elymus elongatus OX=4588 GN=ESI3... [more]
sp|P68179|LT01_HORVU5.6e-0474.07Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE... [more]
BLAST of MELO3C031017.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B667|A0A1S3B667_CUCME2.9e-13100.00low temperature-induced protein lt101.2-like OS=Cucumis melo OX=3656 GN=LOC10348... [more]
tr|A0A0A0LAU7|A0A0A0LAU7_CUCSA2.1e-1192.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736860 PE=4 SV=1[more]
tr|A0A287ENK3|A0A287ENK3_HORVV7.1e-0475.76Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1[more]
tr|A0A287ENP6|A0A287ENP6_HORVV7.1e-0475.76Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR000612PMP3
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C031017.2MELO3C031017.2gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C031017.2.1MELO3C031017.2.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C031017.2.1.CDS.1MELO3C031017.2.1.CDS.1CDS
MELO3C031017.2.1.CDS.2MELO3C031017.2.1.CDS.2CDS
MELO3C031017.2.1.CDS.3MELO3C031017.2.1.CDS.3CDS
MELO3C031017.2.1.CDS.4MELO3C031017.2.1.CDS.4CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C031017.2.1.exon.1MELO3C031017.2.1.exon.1exon
MELO3C031017.2.1.exon.2MELO3C031017.2.1.exon.2exon
MELO3C031017.2.1.exon.3MELO3C031017.2.1.exon.3exon
MELO3C031017.2.1.exon.4MELO3C031017.2.1.exon.4exon


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR21659:SF53SUBFAMILY NOT NAMEDcoord: 73..99
IPR000612Proteolipid membrane potential modulatorPANTHERPTHR21659HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATEDcoord: 73..99
IPR000612Proteolipid membrane potential modulatorPROSITEPS01309UPF0057coord: 82..97