Csa5G146930 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G146930
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 4160721 .. 4161330 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACGGAAACAAATAAATCCTTCCTCCCTATAAATTCCCTCTCCCATTCCCCCCAATTTTGCATCAATTTCCTCACCAACAATCTCTCTCAATTCAACAATTTCAACATAACCAAGATGAATTCCATGTTCAGTTTATTCGACGCCTTCGCTGCCGAATTCCTCCTCGGCAATTTCGTTAGGGCTTCCTCCTCTGTTCCTTCCTTCACTCCCAACAACAACAACGCCTCCCCCGCCGTTCCGAAGCCGCTGCCTAGTAAGAAGGAAGAAGAACCGAAATCCAAGAATTCGTTGATGAAGCCGAGGTTTGCTCTGGAGTTGGATGGTCTCAATTGCTTTGAGACTCTCGTCCCCAATTGAGGTTTTCGGATGAAATAATCAAAGATTCAATTCAACTCATATATTTTTTTTTCATTCATTCTTTCAGTTTAAGGGTTTAGAAGTTAGGTTATACGACGAAATTTGAGGATAATATTGGGAAACTAGAATTGTATTATAATACAAATCAGCCTTCTTCTTTTGGTTGGAATTAGATGATTGGATTCTGTTATACGCTGGAATTTGATATGAAATCTCTGATACTATATTCGTTAATTCATTGCTCTTGCTGG

mRNA sequence

ATGAATTCCATGTTCAGTTTATTCGACGCCTTCGCTGCCGAATTCCTCCTCGGCAATTTCGTTAGGGCTTCCTCCTCTGTTCCTTCCTTCACTCCCAACAACAACAACGCCTCCCCCGCCGTTCCGAAGCCGCTGCCTAGTAAGAAGGAAGAAGAACCGAAATCCAAGAATTCGTTGATGAAGCCGAGGTTTGCTCTGGAGTTGGATGGTCTCAATTGCTTTGAGACTCTCGTCCCCAATTGA

Coding sequence (CDS)

ATGAATTCCATGTTCAGTTTATTCGACGCCTTCGCTGCCGAATTCCTCCTCGGCAATTTCGTTAGGGCTTCCTCCTCTGTTCCTTCCTTCACTCCCAACAACAACAACGCCTCCCCCGCCGTTCCGAAGCCGCTGCCTAGTAAGAAGGAAGAAGAACCGAAATCCAAGAATTCGTTGATGAAGCCGAGGTTTGCTCTGGAGTTGGATGGTCTCAATTGCTTTGAGACTCTCGTCCCCAATTGA

Protein sequence

MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNNNASPAVPKPLPSKKEEEPKSKNSLMKPRFALELDGLNCFETLVPN*

Homology

[Close]

BLAST of Csa5G146930 vs. TrEMBL
Match: A0A0A0KJT8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146930 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 9.4e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1


Query: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNNNASPAVPKPLPSKKEEEPKSKNSLM 60
          MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNNNASPAVPKPLPSKKEEEPKSKNSLM
Sbjct: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNNNASPAVPKPLPSKKEEEPKSKNSLM 60

Query: 61 KPRFALELDGLNCFETLVPN 81
          KPRFALELDGLNCFETLVPN
Sbjct: 61 KPRFALELDGLNCFETLVPN 80

[Close]

BLAST of Csa5G146930 vs. TrEMBL
Match: D7KID9_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_473474 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.9e-07
Identity = 40/81 (49.38%), Postives = 49/81 (60.49%), Query Frame = 1


Query: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNNNASPAVPKPLPSKKEEEPKSKNSLM 60
          MNSMFS FDA  AE ++G  V A+S V     N+ ++S        S K +E  SKN  +
Sbjct: 1  MNSMFSAFDAMCAE-IMGKKVTAASYVYRSERNSASSSGGGQNASLSLKNDEKASKNMDL 60

Query: 61 K---PRFALELDGLNCFETLV 79
              PRFALELDGLNCFET+V
Sbjct: 61 PTKTPRFALELDGLNCFETIV 80

[Close]

BLAST of Csa5G146930 vs. TrEMBL
Match: M5WF57_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014022mg PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.0e-07
Identity = 42/92 (45.65%), Postives = 49/92 (53.26%), Query Frame = 1


Query: 1  MNSMFSLFDAFAAEFLLGNFVRAS--------------SSVPSFTPNNNNASPAVPKPLP 60
          MNSMFS FDA  AEFL G  V+AS               +  S + N NN   A    LP
Sbjct: 1  MNSMFSSFDALCAEFL-GQKVKASFPTQQQQKSTGAVVKNKASVSDNLNNREEA---SLP 60

Query: 61 SKKEEEPKSKNSLMKPRFALELDGLNCFETLV 79
           + +   K ++    PRFALELDGLNCFETLV
Sbjct: 61 QQAQPVKKQQSQKAPPRFALELDGLNCFETLV 88

[Close]

BLAST of Csa5G146930 vs. TrEMBL
Match: A0A061G366_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015608 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.6e-07
Identity = 37/83 (44.58%), Postives = 48/83 (57.83%), Query Frame = 1


Query: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNN-----NASPAVPKPLPSKKEEEPKS 60
          MNS+FS FDAF AEFL G  +R S +  +    N+       +  V + +  K+E   + 
Sbjct: 1  MNSIFSSFDAFCAEFL-GQAIRPSFASTTNKDGNSFLGSRGVTNKVTENMKKKQEGNVEK 60

Query: 61 KNSLMKPRFALELDGLNCFETLV 79
          K  +  PRFA ELDGLNCFETLV
Sbjct: 61 KQQVKAPRFAPELDGLNCFETLV 82

[Close]

BLAST of Csa5G146930 vs. TrEMBL
Match: A0A078D4S2_BRANA (BnaC08g07690D protein OS=Brassica napus GN=BnaC08g07690D PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 6.6e-07
Identity = 38/80 (47.50%), Postives = 48/80 (60.00%), Query Frame = 1


Query: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNNNASPAVPKPLPSKKEEEPKSKNSLM 60
          MNSMFS FDA  AE ++G  + ASS   + T     ASP     +  K E+    +  LM
Sbjct: 1  MNSMFSAFDALFAELMVGKNLMASSF--NATATTKPASPQTQTQV-QKNEKTSNKRTGLM 60

Query: 61 K--PRFALELDGLNCFETLV 79
          +  PRFALELDGL+CFET+V
Sbjct: 61 QKTPRFALELDGLHCFETIV 77

[Close]

BLAST of Csa5G146930 vs. TAIR10
Match: AT1G32928.1 (AT1G32928.1 unknown protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.3e-09
Identity = 40/83 (48.19%), Postives = 50/83 (60.24%), Query Frame = 1


Query: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNNNASPAV--PKPLPSKKEEEPKSKNS 60
          MNSMFS FDA  AE ++G  V A+S V     N+ ++S +V       S K++E  SKN 
Sbjct: 1  MNSMFSAFDAMCAE-IMGKKVTAASYVYRSERNSASSSSSVGGQNASLSLKKDEKASKNM 60

Query: 61 LMK---PRFALELDGLNCFETLV 79
           +    PRFALELDGL+CFET+V
Sbjct: 61 DLPTKTPRFALELDGLHCFETIV 82

[Close]

BLAST of Csa5G146930 vs. TAIR10
Match: AT1G32920.1 (AT1G32920.1 unknown protein)

HSP 1 Score: 56.6 bits (135), Expect = 8.2e-09
Identity = 38/81 (46.91%), Postives = 45/81 (55.56%), Query Frame = 1


Query: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNNNASPAV-PKPLPSKKEEEPKSKNSL 60
          MNSMFS FDA  AE ++G  + ASS    FT       PA  P+    +K      K  L
Sbjct: 1  MNSMFSAFDALFAE-VMGKNLMASS----FTATTATTKPAAAPQTQTQEKANASSKKIGL 60

Query: 61 MK--PRFALELDGLNCFETLV 79
          ++  PRFALELDGL+CFET+V
Sbjct: 61 VQKIPRFALELDGLHCFETIV 76

[Close]

BLAST of Csa5G146930 vs. NCBI nr
Match: gi|778699182|ref|XP_011654674.1| (PREDICTED: uncharacterized protein LOC105435432 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1


Query: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNNNASPAVPKPLPSKKEEEPKSKNSLM 60
          MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNNNASPAVPKPLPSKKEEEPKSKNSLM
Sbjct: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNNNASPAVPKPLPSKKEEEPKSKNSLM 60

Query: 61 KPRFALELDGLNCFETLVPN 81
          KPRFALELDGLNCFETLVPN
Sbjct: 61 KPRFALELDGLNCFETLVPN 80

[Close]

BLAST of Csa5G146930 vs. NCBI nr
Match: gi|659074166|ref|XP_008437457.1| (PREDICTED: uncharacterized protein LOC103482873 [Cucumis melo])

HSP 1 Score: 143.3 bits (360), Expect = 1.9e-31
Identity = 74/83 (89.16%), Postives = 77/83 (92.77%), Query Frame = 1


Query: 1  MNSMFSLFDAFAAEFLLGN-FVRASSSVPSFTPNNNN--ASPAVPKPLPSKKEEEPKSKN 60
          MNSMFSLFDAFAAEFLLGN FVRASSS+PSFTPNNNN  AS AVPKPLPSKK+EEPK KN
Sbjct: 1  MNSMFSLFDAFAAEFLLGNNFVRASSSIPSFTPNNNNNAASSAVPKPLPSKKKEEPKPKN 60

Query: 61 SLMKPRFALELDGLNCFETLVPN 81
          S +KPRFALELDGLNCFETLVPN
Sbjct: 61 SSVKPRFALELDGLNCFETLVPN 83

[Close]

BLAST of Csa5G146930 vs. NCBI nr
Match: gi|297846272|ref|XP_002891017.1| (hypothetical protein ARALYDRAFT_473474 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 62.4 bits (150), Expect = 4.2e-07
Identity = 40/81 (49.38%), Postives = 49/81 (60.49%), Query Frame = 1


Query: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNNNASPAVPKPLPSKKEEEPKSKNSLM 60
          MNSMFS FDA  AE ++G  V A+S V     N+ ++S        S K +E  SKN  +
Sbjct: 1  MNSMFSAFDAMCAE-IMGKKVTAASYVYRSERNSASSSGGGQNASLSLKNDEKASKNMDL 60

Query: 61 K---PRFALELDGLNCFETLV 79
              PRFALELDGLNCFET+V
Sbjct: 61 PTKTPRFALELDGLNCFETIV 80

[Close]

BLAST of Csa5G146930 vs. NCBI nr
Match: gi|645294320|ref|XP_008245785.1| (PREDICTED: uncharacterized protein LOC103343930 [Prunus mume])

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-07
Identity = 42/92 (45.65%), Postives = 50/92 (54.35%), Query Frame = 1


Query: 1  MNSMFSLFDAFAAEFLLGNFVRAS--------------SSVPSFTPNNNNASPAVPKPLP 60
          MNSMFS FDA  AEFL G  V+AS              ++  S + N NN   A    LP
Sbjct: 1  MNSMFSSFDALCAEFL-GQKVKASFPTQQQQKSTGAVVNNKASVSDNLNNREEA---SLP 60

Query: 61 SKKEEEPKSKNSLMKPRFALELDGLNCFETLV 79
           + +   K ++    PRFALELDGLNCFETLV
Sbjct: 61 QQAQPVKKQQSQKAPPRFALELDGLNCFETLV 88

[Close]

BLAST of Csa5G146930 vs. NCBI nr
Match: gi|595860870|ref|XP_007211228.1| (hypothetical protein PRUPE_ppa014022mg [Prunus persica])

HSP 1 Score: 61.6 bits (148), Expect = 7.2e-07
Identity = 42/92 (45.65%), Postives = 49/92 (53.26%), Query Frame = 1


Query: 1  MNSMFSLFDAFAAEFLLGNFVRAS--------------SSVPSFTPNNNNASPAVPKPLP 60
          MNSMFS FDA  AEFL G  V+AS               +  S + N NN   A    LP
Sbjct: 1  MNSMFSSFDALCAEFL-GQKVKASFPTQQQQKSTGAVVKNKASVSDNLNNREEA---SLP 60

Query: 61 SKKEEEPKSKNSLMKPRFALELDGLNCFETLV 79
           + +   K ++    PRFALELDGLNCFETLV
Sbjct: 61 QQAQPVKKQQSQKAPPRFALELDGLNCFETLV 88

The following BLAST results are available for this feature:

BLAST of Csa5G146930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJT8_CUCSA	9.4e-38	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146930 PE=4 SV=1	[more]
D7KID9_ARALL	2.9e-07	49.38	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
M5WF57_PRUPE	5.0e-07	45.65	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014022mg PE=4 SV=1	[more]
A0A061G366_THECC	6.6e-07	44.58	Uncharacterized protein OS=Theobroma cacao GN=TCM_015608 PE=4 SV=1	[more]
A0A078D4S2_BRANA	6.6e-07	47.50	BnaC08g07690D protein OS=Brassica napus GN=BnaC08g07690D PE=4 SV=1	[more]

BLAST of Csa5G146930 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32928.1	1.3e-09	48.19	unknown protein	[more]
AT1G32920.1	8.2e-09	46.91	unknown protein	[more]

BLAST of Csa5G146930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778699182\|ref\|XP_011654674.1\|	1.3e-37	100.00	PREDICTED: uncharacterized protein LOC105435432 [Cucumis sativus]	[more]
gi\|659074166\|ref\|XP_008437457.1\|	1.9e-31	89.16	PREDICTED: uncharacterized protein LOC103482873 [Cucumis melo]	[more]
gi\|297846272\|ref\|XP_002891017.1\|	4.2e-07	49.38	hypothetical protein ARALYDRAFT_473474 [Arabidopsis lyrata subsp. lyrata]	[more]
gi\|645294320\|ref\|XP_008245785.1\|	5.5e-07	45.65	PREDICTED: uncharacterized protein LOC103343930 [Prunus mume]	[more]
gi\|595860870\|ref\|XP_007211228.1\|	7.2e-07	45.65	hypothetical protein PRUPE_ppa014022mg [Prunus persica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU086095	cucumber EST collection version 3.0	transcribed_cluster
CU102274	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G146930.1	Csa5G146930.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU102274	CU102274	transcribed_cluster
CU086095	CU086095	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G146930	Cla004987	Watermelon (97103) v1	cuwmB408
Csa5G146930	MELO3C005796	Melon (DHL92) v3.5.1	cumeB357
Csa5G146930	ClCG01G001400	Watermelon (Charleston Gray)	cuwcgB364
Csa5G146930	Lsi09G001260	Bottle gourd (USVL1VR-Ls)	culsiB322
Csa5G146930	MELO3C005796.2	Melon (DHL92) v3.6.1	cumedB336
Csa5G146930	Cla97C01G001410	Watermelon (97103) v2	cuwmbB336
Csa5G146930	Bhi12G000061	Wax gourd	cuwgoB437
Csa5G146930	CSPI05G04160	Wild cucumber (PI 183967)	cpicuB240
Csa5G146930	Cucsa.193400	Cucumber (Gy14) v1	cgycuB295
Csa5G146930	CmoCh15G013910	Cucurbita moschata (Rifu)	cmocuB286
Csa5G146930	Cp4.1LG00g00800	Cucurbita pepo (Zucchini)	cpecuB017
Csa5G146930	CsGy5G001400	Cucumber (Gy14) v2	cgybcuB224
Csa5G146930	Carg21317	Silver-seed gourd	carcuB0390

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G146930	Cucurbita maxima (Rimu)	cmacuB298
Csa5G146930	Cucurbita maxima (Rimu)	cmacuB611
Csa5G146930	Cucurbita moschata (Rifu)	cmocuB604
Csa5G146930	Cucurbita pepo (Zucchini)	cpecuB731
Csa5G146930	Silver-seed gourd	carcuB0731