Cp4.1LG00g00800 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG00g00800
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG00 : 1987351 .. 1987611 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCCATGTTCAGTTTCTTCGATGCCTTCGCCGCCGAGATCCTCATCGGAAAGTTCGTTACGGCTTCTACTTCTGTCCCTTCCTTCACTCCCAACACCGGCGGCGGTGGTTCTGCCTCTTCCGCTCCTGTGAAGTCGATGCCGGGAAAGAAGGATGAAGCTAACGCCGTAGCCAAGTCCAAGAACTCGTCGATGAAGCCGAGATTCGCTCTGGAGCTCGATGGCCTCAATTGCTTTGAGACTCTCGTCCCAAATTGA

mRNA sequence

ATGAATTCCATGTTCAGTTTCTTCGATGCCTTCGCCGCCGAGATCCTCATCGGAAAGTTCGTTACGGCTTCTACTTCTGTCCCTTCCTTCACTCCCAACACCGGCGGCGGTGGTTCTGCCTCTTCCGCTCCTGTGAAGTCGATGCCGGGAAAGAAGGATGAAGCTAACGCCGTAGCCAAGTCCAAGAACTCGTCGATGAAGCCGAGATTCGCTCTGGAGCTCGATGGCCTCAATTGCTTTGAGACTCTCGTCCCAAATTGA

Coding sequence (CDS)

ATGAATTCCATGTTCAGTTTCTTCGATGCCTTCGCCGCCGAGATCCTCATCGGAAAGTTCGTTACGGCTTCTACTTCTGTCCCTTCCTTCACTCCCAACACCGGCGGCGGTGGTTCTGCCTCTTCCGCTCCTGTGAAGTCGATGCCGGGAAAGAAGGATGAAGCTAACGCCGTAGCCAAGTCCAAGAACTCGTCGATGAAGCCGAGATTCGCTCTGGAGCTCGATGGCCTCAATTGCTTTGAGACTCTCGTCCCAAATTGA

Protein sequence

MNSMFSFFDAFAAEILIGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKDEANAVAKSKNSSMKPRFALELDGLNCFETLVPN

Homology

[Close]

BLAST of Cp4.1LG00g00800 vs. TrEMBL
Match: A0A0A0KJT8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146930 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.4e-20
Identity = 61/86 (70.93%), Postives = 66/86 (76.74%), Query Frame = 1


Query: 1  MNSMFSFFDAFAAEILIGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKDEANAVAK 60
          MNSMFS FDAFAAE L+G FV AS+SVPSFTPN     +AS A  K +P KK+E     K
Sbjct: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPN---NNNASPAVPKPLPSKKEEE---PK 60

Query: 61 SKNSSMKPRFALELDGLNCFETLVPN 87
          SKNS MKPRFALELDGLNCFETLVPN
Sbjct: 61 SKNSLMKPRFALELDGLNCFETLVPN 80

[Close]

BLAST of Cp4.1LG00g00800 vs. TrEMBL
Match: A0A078GK40_BRANA (BnaA05g17920D protein OS=Brassica napus GN=BnaA05g17920D PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.3e-07
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 1


Query: 1  MNSMFSFFDAFAAEILIGKFVTASTSV--PSFTPNTGGGGSASSAPVKSMPGKKDEANAV 60
          MNSMFS FDA +AEI+ GK VTA++ V  PS   ++GGGG  + + +K    K + A ++
Sbjct: 1  MNSMFSAFDAMSAEIM-GKKVTAASYVCNPSQAASSGGGGGQTVSLLK----KDENATSL 60

Query: 61 AKSKNSSMKPRFALELDGLNCFETLV 85
          AK +     PR+ALELDG++CFET+V
Sbjct: 61 AKKQ-----PRYALELDGIHCFETIV 76

[Close]

BLAST of Cp4.1LG00g00800 vs. TrEMBL
Match: M4D142_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.3e-07
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 1


Query: 1  MNSMFSFFDAFAAEILIGKFVTASTSV--PSFTPNTGGGGSASSAPVKSMPGKKDEANAV 60
          MNSMFS FDA +AEI+ GK VTA++ V  PS   ++GGGG  + + +K    K + A ++
Sbjct: 1  MNSMFSAFDAMSAEIM-GKKVTAASYVCNPSQAASSGGGGGQTVSLLK----KDENATSL 60

Query: 61 AKSKNSSMKPRFALELDGLNCFETLV 85
          AK +     PR+ALELDG++CFET+V
Sbjct: 61 AKKQ-----PRYALELDGIHCFETIV 76

[Close]

BLAST of Cp4.1LG00g00800 vs. TrEMBL
Match: A0A0D3CGL1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-06
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 1


Query: 1  MNSMFSFFDAFAAEILIGKFVTASTSV--PSFTPNTGGGGSASSAPVKSMPGKKDEANAV 60
          MNSMFS FD  +AEI+ GK VTA++ V  PS   ++GGGG  + + +K    K + A ++
Sbjct: 1  MNSMFSAFDDMSAEIM-GKKVTAASYVCNPSQAASSGGGGGQTVSLLK----KDENATSL 60

Query: 61 AKSKNSSMKPRFALELDGLNCFETLV 85
          AK +     PR+ALELDG++CFET+V
Sbjct: 61 AKKQ-----PRYALELDGIHCFETIV 76

[Close]

BLAST of Cp4.1LG00g00800 vs. TrEMBL
Match: Q56XA0_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=At1g32928 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.9e-06
Identity = 43/87 (49.43%), Postives = 52/87 (59.77%), Query Frame = 1


Query: 1  MNSMFSFFDAFAAEILIGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKDEANAVAK 60
          MNSMFS FDA  AEI+ GK VTA++ V     N+    S+      S+  KKDE      
Sbjct: 1  MNSMFSAFDAMCAEIM-GKKVTAASYVYRSERNSASSSSSVGGQNASLSLKKDEK----A 60

Query: 61 SKNSSMK---PRFALELDGLNCFETLV 85
          SKN  +    PRFALELDGL+CFET+V
Sbjct: 61 SKNMDLPTKTPRFALELDGLHCFETIV 82

[Close]

BLAST of Cp4.1LG00g00800 vs. TAIR10
Match: AT1G32928.1 (AT1G32928.1 unknown protein)

HSP 1 Score: 58.2 bits (139), Expect = 3.0e-09
Identity = 43/87 (49.43%), Postives = 52/87 (59.77%), Query Frame = 1


Query: 1  MNSMFSFFDAFAAEILIGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKDEANAVAK 60
          MNSMFS FDA  AEI+ GK VTA++ V     N+    S+      S+  KKDE      
Sbjct: 1  MNSMFSAFDAMCAEIM-GKKVTAASYVYRSERNSASSSSSVGGQNASLSLKKDEK----A 60

Query: 61 SKNSSMK---PRFALELDGLNCFETLV 85
          SKN  +    PRFALELDGL+CFET+V
Sbjct: 61 SKNMDLPTKTPRFALELDGLHCFETIV 82

[Close]

BLAST of Cp4.1LG00g00800 vs. TAIR10
Match: AT1G32920.1 (AT1G32920.1 unknown protein)

HSP 1 Score: 52.0 bits (123), Expect = 2.1e-07
Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 1  MNSMFSFFDAFAAEILIGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKDEANAVAK 60
          MNSMFS FDA  AE++ GK + AS    SFT  T     A++   ++    +++ANA +K
Sbjct: 1  MNSMFSAFDALFAEVM-GKNLMAS----SFTATTATTKPAAAPQTQT----QEKANASSK 60

Query: 61 SKNSSMK-PRFALELDGLNCFETLV 85
                K PRFALELDGL+CFET+V
Sbjct: 61 KIGLVQKIPRFALELDGLHCFETIV 76

[Close]

BLAST of Cp4.1LG00g00800 vs. NCBI nr
Match: gi|778699182|ref|XP_011654674.1| (PREDICTED: uncharacterized protein LOC105435432 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 2.1e-20
Identity = 61/86 (70.93%), Postives = 66/86 (76.74%), Query Frame = 1


Query: 1  MNSMFSFFDAFAAEILIGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKDEANAVAK 60
          MNSMFS FDAFAAE L+G FV AS+SVPSFTPN     +AS A  K +P KK+E     K
Sbjct: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPN---NNNASPAVPKPLPSKKEEE---PK 60

Query: 61 SKNSSMKPRFALELDGLNCFETLVPN 87
          SKNS MKPRFALELDGLNCFETLVPN
Sbjct: 61 SKNSLMKPRFALELDGLNCFETLVPN 80

[Close]

BLAST of Cp4.1LG00g00800 vs. NCBI nr
Match: gi|659074166|ref|XP_008437457.1| (PREDICTED: uncharacterized protein LOC103482873 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 6.7e-19
Identity = 58/87 (66.67%), Postives = 66/87 (75.86%), Query Frame = 1


Query: 1  MNSMFSFFDAFAAEILIGK-FVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKDEANAVA 60
          MNSMFS FDAFAAE L+G  FV AS+S+PSFTPN     ++S+ P K +P KK E     
Sbjct: 1  MNSMFSLFDAFAAEFLLGNNFVRASSSIPSFTPNNNNNAASSAVP-KPLPSKKKEE---P 60

Query: 61 KSKNSSMKPRFALELDGLNCFETLVPN 87
          K KNSS+KPRFALELDGLNCFETLVPN
Sbjct: 61 KPKNSSVKPRFALELDGLNCFETLVPN 83

[Close]

BLAST of Cp4.1LG00g00800 vs. NCBI nr
Match: gi|685323556|ref|XP_009151460.1| (PREDICTED: uncharacterized protein LOC103874775 [Brassica rapa])

HSP 1 Score: 61.6 bits (148), Expect = 7.7e-07
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 1


Query: 1  MNSMFSFFDAFAAEILIGKFVTASTSV--PSFTPNTGGGGSASSAPVKSMPGKKDEANAV 60
          MNSMFS FDA +AEI+ GK VTA++ V  PS   ++GGGG  + + +K    K + A ++
Sbjct: 1  MNSMFSAFDAMSAEIM-GKKVTAASYVCNPSQAASSGGGGGQTVSLLK----KDENATSL 60

Query: 61 AKSKNSSMKPRFALELDGLNCFETLV 85
          AK +     PR+ALELDG++CFET+V
Sbjct: 61 AKKQ-----PRYALELDGIHCFETIV 76

[Close]

BLAST of Cp4.1LG00g00800 vs. NCBI nr
Match: gi|922491684|ref|XP_013585202.1| (PREDICTED: uncharacterized protein LOC106294147 [Brassica oleracea var. oleracea])

HSP 1 Score: 59.3 bits (142), Expect = 3.8e-06
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 1


Query: 1  MNSMFSFFDAFAAEILIGKFVTASTSV--PSFTPNTGGGGSASSAPVKSMPGKKDEANAV 60
          MNSMFS FD  +AEI+ GK VTA++ V  PS   ++GGGG  + + +K    K + A ++
Sbjct: 1  MNSMFSAFDDMSAEIM-GKKVTAASYVCNPSQAASSGGGGGQTVSLLK----KDENATSL 60

Query: 61 AKSKNSSMKPRFALELDGLNCFETLV 85
          AK +     PR+ALELDG++CFET+V
Sbjct: 61 AKKQ-----PRYALELDGIHCFETIV 76

[Close]

BLAST of Cp4.1LG00g00800 vs. NCBI nr
Match: gi|116830227|gb|ABK28071.1| (unknown [Arabidopsis thaliana])

HSP 1 Score: 58.2 bits (139), Expect = 8.5e-06
Identity = 43/87 (49.43%), Postives = 52/87 (59.77%), Query Frame = 1


Query: 1  MNSMFSFFDAFAAEILIGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKDEANAVAK 60
          MNSMFS FDA  AEI+ GK VTA++ V     N+    S+      S+  KKDE      
Sbjct: 1  MNSMFSAFDAMCAEIM-GKKVTAASYVYRSERNSASSSSSVGGQNASLSLKKDEK----A 60

Query: 61 SKNSSMK---PRFALELDGLNCFETLV 85
          SKN  +    PRFALELDGL+CFET+V
Sbjct: 61 SKNMDLPTKTPRFALELDGLHCFETIV 82

The following BLAST results are available for this feature:

BLAST of Cp4.1LG00g00800 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG00g00800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJT8_CUCSA	1.4e-20	70.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146930 PE=4 SV=1	[more]
A0A078GK40_BRANA	5.3e-07	48.84	BnaA05g17920D protein OS=Brassica napus GN=BnaA05g17920D PE=4 SV=1	[more]
M4D142_BRARP	5.3e-07	48.84	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
A0A0D3CGL1_BRAOL	2.6e-06	47.67	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
Q56XA0_ARATH	5.9e-06	49.43	Uncharacterized protein OS=Arabidopsis thaliana GN=At1g32928 PE=2 SV=1	[more]

BLAST of Cp4.1LG00g00800 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32928.1	3.0e-09	49.43	unknown protein	[more]
AT1G32920.1	2.1e-07	47.06	unknown protein	[more]

BLAST of Cp4.1LG00g00800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778699182\|ref\|XP_011654674.1\|	2.1e-20	70.93	PREDICTED: uncharacterized protein LOC105435432 [Cucumis sativus]	[more]
gi\|659074166\|ref\|XP_008437457.1\|	6.7e-19	66.67	PREDICTED: uncharacterized protein LOC103482873 [Cucumis melo]	[more]
gi\|685323556\|ref\|XP_009151460.1\|	7.7e-07	48.84	PREDICTED: uncharacterized protein LOC103874775 [Brassica rapa]	[more]
gi\|922491684\|ref\|XP_013585202.1\|	3.8e-06	47.67	PREDICTED: uncharacterized protein LOC106294147 [Brassica oleracea var. oleracea...	[more]
gi\|116830227\|gb\|ABK28071.1\|	8.5e-06	49.43	unknown [Arabidopsis thaliana]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG00g00800.1	Cp4.1LG00g00800.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG00g00800	Cucsa.193400	Cucumber (Gy14) v1	cgycpeB0541
Cp4.1LG00g00800	CmoCh15G013910	Cucurbita moschata (Rifu)	cmocpeB262
Cp4.1LG00g00800	Cla004987	Watermelon (97103) v1	cpewmB013
Cp4.1LG00g00800	Csa5G146930	Cucumber (Chinese Long) v2	cpecuB017
Cp4.1LG00g00800	ClCG01G001400	Watermelon (Charleston Gray)	cpewcgB009
Cp4.1LG00g00800	CSPI05G04160	Wild cucumber (PI 183967)	cpecpiB014
Cp4.1LG00g00800	Lsi09G001260	Bottle gourd (USVL1VR-Ls)	cpelsiB002
Cp4.1LG00g00800	CsaV3_5G001540	Cucumber (Chinese Long) v3	cpecucB0017
Cp4.1LG00g00800	Bhi12G000061	Wax gourd	cpewgoB0004

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG00g00800	Cucurbita pepo (Zucchini)	cpecpeB011
Cp4.1LG00g00800	Cucurbita maxima (Rimu)	cmacpeB299
Cp4.1LG00g00800	Cucurbita maxima (Rimu)	cmacpeB595
Cp4.1LG00g00800	Cucurbita moschata (Rifu)	cmocpeB542
Cp4.1LG00g00800	Melon (DHL92) v3.5.1	cpemeB000
Cp4.1LG00g00800	Cucumber (Gy14) v2	cgybcpeB580
Cp4.1LG00g00800	Melon (DHL92) v3.6.1	cpemedB000
Cp4.1LG00g00800	Silver-seed gourd	carcpeB0501
Cp4.1LG00g00800	Silver-seed gourd	carcpeB0993