Cla004987 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004987
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr1 : 1162585 .. 1162836 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCCATGTTCAGTTTCTTCGATGCCTTCGCCGCCGAATTGCTCCTCGGCAAATTCGTTAGGGATTCTTCCTCTGTTCCTTCCTTCACTCCTAACAACGGCGGCTCCGCCTCTTCCGCCGCTTCCGCCTCCCCGAAGTCGCTGCCGAACAAGAAAGAAGAAGCTAATTCCAAGAATTCGTCGATGAAGCCGAGATTTGCTCTGGAGTTAGATGGCCTCAATTGCTTCGAGACTCTCGTCCCGAATTGA

mRNA sequence

ATGAATTCCATGTTCAGTTTCTTCGATGCCTTCGCCGCCGAATTGCTCCTCGGCAAATTCGTTAGGGATTCTTCCTCTGTTCCTTCCTTCACTCCTAACAACGGCGGCTCCGCCTCTTCCGCCGCTTCCGCCTCCCCGAAGTCGCTGCCGAACAAGAAAGAAGAAGCTAATTCCAAGAATTCGTCGATGAAGCCGAGATTTGCTCTGGAGTTAGATGGCCTCAATTGCTTCGAGACTCTCGTCCCGAATTGA

Coding sequence (CDS)

ATGAATTCCATGTTCAGTTTCTTCGATGCCTTCGCCGCCGAATTGCTCCTCGGCAAATTCGTTAGGGATTCTTCCTCTGTTCCTTCCTTCACTCCTAACAACGGCGGCTCCGCCTCTTCCGCCGCTTCCGCCTCCCCGAAGTCGCTGCCGAACAAGAAAGAAGAAGCTAATTCCAAGAATTCGTCGATGAAGCCGAGATTTGCTCTGGAGTTAGATGGCCTCAATTGCTTCGAGACTCTCGTCCCGAATTGA

Protein sequence

MNSMFSFFDAFAAELLLGKFVRDSSSVPSFTPNNGGSASSAASASPKSLPNKKEEANSKNSSMKPRFALELDGLNCFETLVPN

Homology

[Close]

BLAST of Cla004987 vs. TrEMBL
Match: A0A0A0KJT8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146930 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 7.1e-25
Identity = 65/84 (77.38%), Postives = 69/84 (82.14%), Query Frame = 1


Query: 1  MNSMFSFFDAFAAELLLGKFVRDSSSVPSFTPNNGGSASSAASASPKSLPNKK-EEANSK 60
          MNSMFS FDAFAAE LLG FVR SSSVPSFTPNN    ++A+ A PK LP+KK EE  SK
Sbjct: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNN----NNASPAVPKPLPSKKEEEPKSK 60

Query: 61 NSSMKPRFALELDGLNCFETLVPN 84
          NS MKPRFALELDGLNCFETLVPN
Sbjct: 61 NSLMKPRFALELDGLNCFETLVPN 80

[Close]

BLAST of Cla004987 vs. TrEMBL
Match: A0MDW3_ARATH (Putative uncharacterized protein (Fragment) OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.2e-09
Identity = 43/84 (51.19%), Postives = 53/84 (63.10%), Query Frame = 1


Query: 1  MNSMFSFFDAFAAELLLGKFVRDSSSVPSFTPNNGGSASSAASASPKSLPNKKEEANSKN 60
          MNSMFS FDA  AE++ GK V  +S V   +  N  S+SS+      SL  KK+E  SKN
Sbjct: 1  MNSMFSAFDAMCAEIM-GKKVTAASYVYR-SERNSASSSSSVGGQNASLSLKKDEKASKN 60

Query: 61 SSMK---PRFALELDGLNCFETLV 82
            +    PRFALELDGL+CFET+V
Sbjct: 61 MDLPTKTPRFALELDGLHCFETIV 82

[Close]

BLAST of Cla004987 vs. TrEMBL
Match: Q56XA0_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=At1g32928 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.2e-09
Identity = 43/84 (51.19%), Postives = 53/84 (63.10%), Query Frame = 1


Query: 1  MNSMFSFFDAFAAELLLGKFVRDSSSVPSFTPNNGGSASSAASASPKSLPNKKEEANSKN 60
          MNSMFS FDA  AE++ GK V  +S V   +  N  S+SS+      SL  KK+E  SKN
Sbjct: 1  MNSMFSAFDAMCAEIM-GKKVTAASYVYR-SERNSASSSSSVGGQNASLSLKKDEKASKN 60

Query: 61 SSMK---PRFALELDGLNCFETLV 82
            +    PRFALELDGL+CFET+V
Sbjct: 61 MDLPTKTPRFALELDGLHCFETIV 82

[Close]

BLAST of Cla004987 vs. TrEMBL
Match: V4L1D3_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10009742mg PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.4e-09
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 1


Query: 1  MNSMFSFFDAFAAELLLGKFVRDSSSVPSFTPNNGGSASSAASASPKSLPN--KKEEANS 60
          MNSMFS FDA  AE++  KF  DSS   S+  N     +SA S +   + +  KK+E  +
Sbjct: 1  MNSMFSAFDAMCAEIMGKKFTADSSV--SYVCNRSKRKNSAPSGAGGQIASSLKKDEKAA 60

Query: 61 KNSSMKPRFALELDGLNCFETLV 82
           +++ +PRFALELDG++CFET+V
Sbjct: 61 NSATKQPRFALELDGIHCFETIV 81

[Close]

BLAST of Cla004987 vs. TrEMBL
Match: D7KID9_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_473474 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-08
Identity = 44/84 (52.38%), Postives = 51/84 (60.71%), Query Frame = 1


Query: 1  MNSMFSFFDAFAAELLLGKFVRDSSSVPSFTPNNGGSASSAASASPKSLPNKKEEANSKN 60
          MNSMFS FDA  AE++ GK V  +S V     N   SASS+      SL  K +E  SKN
Sbjct: 1  MNSMFSAFDAMCAEIM-GKKVTAASYVYRSERN---SASSSGGGQNASLSLKNDEKASKN 60

Query: 61 SSMK---PRFALELDGLNCFETLV 82
            +    PRFALELDGLNCFET+V
Sbjct: 61 MDLPTKTPRFALELDGLNCFETIV 80

[Close]

BLAST of Cla004987 vs. NCBI nr
Match: gi|778699182|ref|XP_011654674.1| (PREDICTED: uncharacterized protein LOC105435432 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 1.0e-24
Identity = 65/84 (77.38%), Postives = 69/84 (82.14%), Query Frame = 1


Query: 1  MNSMFSFFDAFAAELLLGKFVRDSSSVPSFTPNNGGSASSAASASPKSLPNKK-EEANSK 60
          MNSMFS FDAFAAE LLG FVR SSSVPSFTPNN    ++A+ A PK LP+KK EE  SK
Sbjct: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNN----NNASPAVPKPLPSKKEEEPKSK 60

Query: 61 NSSMKPRFALELDGLNCFETLVPN 84
          NS MKPRFALELDGLNCFETLVPN
Sbjct: 61 NSLMKPRFALELDGLNCFETLVPN 80

[Close]

BLAST of Cla004987 vs. NCBI nr
Match: gi|659074166|ref|XP_008437457.1| (PREDICTED: uncharacterized protein LOC103482873 [Cucumis melo])

HSP 1 Score: 118.6 bits (296), Expect = 5.1e-24
Identity = 65/85 (76.47%), Postives = 70/85 (82.35%), Query Frame = 1


Query: 1  MNSMFSFFDAFAAELLLG-KFVRDSSSVPSFTPNNGGSASSAASASPKSLPN-KKEEANS 60
          MNSMFS FDAFAAE LLG  FVR SSS+PSFTPNN  +A  A+SA PK LP+ KKEE   
Sbjct: 1  MNSMFSLFDAFAAEFLLGNNFVRASSSIPSFTPNNNNNA--ASSAVPKPLPSKKKEEPKP 60

Query: 61 KNSSMKPRFALELDGLNCFETLVPN 84
          KNSS+KPRFALELDGLNCFETLVPN
Sbjct: 61 KNSSVKPRFALELDGLNCFETLVPN 83

[Close]

BLAST of Cla004987 vs. NCBI nr
Match: gi|79319107|ref|NP_001031132.1| (uncharacterized protein [Arabidopsis thaliana])

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-08
Identity = 43/84 (51.19%), Postives = 53/84 (63.10%), Query Frame = 1


Query: 1  MNSMFSFFDAFAAELLLGKFVRDSSSVPSFTPNNGGSASSAASASPKSLPNKKEEANSKN 60
          MNSMFS FDA  AE++ GK V  +S V   +  N  S+SS+      SL  KK+E  SKN
Sbjct: 1  MNSMFSAFDAMCAEIM-GKKVTAASYVYR-SERNSASSSSSVGGQNASLSLKKDEKASKN 60

Query: 61 SSMK---PRFALELDGLNCFETLV 82
            +    PRFALELDGL+CFET+V
Sbjct: 61 MDLPTKTPRFALELDGLHCFETIV 82

[Close]

BLAST of Cla004987 vs. NCBI nr
Match: gi|116830227|gb|ABK28071.1| (unknown [Arabidopsis thaliana])

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-08
Identity = 43/84 (51.19%), Postives = 53/84 (63.10%), Query Frame = 1


Query: 1  MNSMFSFFDAFAAELLLGKFVRDSSSVPSFTPNNGGSASSAASASPKSLPNKKEEANSKN 60
          MNSMFS FDA  AE++ GK V  +S V   +  N  S+SS+      SL  KK+E  SKN
Sbjct: 1  MNSMFSAFDAMCAEIM-GKKVTAASYVYR-SERNSASSSSSVGGQNASLSLKKDEKASKN 60

Query: 61 SSMK---PRFALELDGLNCFETLV 82
            +    PRFALELDGL+CFET+V
Sbjct: 61 MDLPTKTPRFALELDGLHCFETIV 82

[Close]

BLAST of Cla004987 vs. NCBI nr
Match: gi|567145198|ref|XP_006415180.1| (hypothetical protein EUTSA_v10009742mg [Eutrema salsugineum])

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-08
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 1


Query: 1  MNSMFSFFDAFAAELLLGKFVRDSSSVPSFTPNNGGSASSAASASPKSLPN--KKEEANS 60
          MNSMFS FDA  AE++  KF  DSS   S+  N     +SA S +   + +  KK+E  +
Sbjct: 1  MNSMFSAFDAMCAEIMGKKFTADSSV--SYVCNRSKRKNSAPSGAGGQIASSLKKDEKAA 60

Query: 61 KNSSMKPRFALELDGLNCFETLV 82
           +++ +PRFALELDG++CFET+V
Sbjct: 61 NSATKQPRFALELDGIHCFETIV 81

The following BLAST results are available for this feature:

BLAST of Cla004987 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJT8_CUCSA	7.1e-25	77.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146930 PE=4 SV=1	[more]
A0MDW3_ARATH	7.2e-09	51.19	Putative uncharacterized protein (Fragment) OS=Arabidopsis thaliana PE=4 SV=1	[more]
Q56XA0_ARATH	7.2e-09	51.19	Uncharacterized protein OS=Arabidopsis thaliana GN=At1g32928 PE=2 SV=1	[more]
V4L1D3_EUTSA	9.4e-09	45.78	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10009742mg PE=4 SV=1	[more]
D7KID9_ARALL	2.1e-08	52.38	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]

BLAST of Cla004987 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778699182\|ref\|XP_011654674.1\|	1.0e-24	77.38	PREDICTED: uncharacterized protein LOC105435432 [Cucumis sativus]	[more]
gi\|659074166\|ref\|XP_008437457.1\|	5.1e-24	76.47	PREDICTED: uncharacterized protein LOC103482873 [Cucumis melo]	[more]
gi\|79319107\|ref\|NP_001031132.1\|	1.0e-08	51.19	uncharacterized protein [Arabidopsis thaliana]	[more]
gi\|116830227\|gb\|ABK28071.1\|	1.0e-08	51.19	unknown [Arabidopsis thaliana]	[more]
gi\|567145198\|ref\|XP_006415180.1\|	1.3e-08	45.78	hypothetical protein EUTSA_v10009742mg [Eutrema salsugineum]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU38453	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU54052	watermelon EST collection version 2.0	transcribed_cluster
WMU54957	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004987	Cla004987.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU38453	WMU38453	transcribed_cluster
WMU54052	WMU54052	transcribed_cluster
WMU54957	WMU54957	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla004987	Cla97C01G001410	Watermelon (97103) v2	wmwmbB235
Cla004987	Csa5G146930	Cucumber (Chinese Long) v2	cuwmB408
Cla004987	ClCG01G001400	Watermelon (Charleston Gray)	wcgwmB142
Cla004987	CSPI05G04160	Wild cucumber (PI 183967)	cpiwmB416
Cla004987	Cucsa.193400	Cucumber (Gy14) v1	cgywmB373
Cla004987	CmoCh15G013910	Cucurbita moschata (Rifu)	cmowmB267
Cla004987	Lsi09G001260	Bottle gourd (USVL1VR-Ls)	lsiwmB027
Cla004987	Cp4.1LG00g00800	Cucurbita pepo (Zucchini)	cpewmB013
Cla004987	CsGy5G001400	Cucumber (Gy14) v2	cgybwmB381
Cla004987	MELO3C005796.2	Melon (DHL92) v3.6.1	medwmB027
Cla004987	Carg21317	Silver-seed gourd	carwmB0352
Cla004987	CsaV3_5G001540	Cucumber (Chinese Long) v3	cucwmB433
Cla004987	Bhi12G000061	Wax gourd	wgowmB076

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004987	Cucurbita maxima (Rimu)	cmawmB277
Cla004987	Cucurbita maxima (Rimu)	cmawmB573
Cla004987	Cucurbita moschata (Rifu)	cmowmB568
Cla004987	Melon (DHL92) v3.5.1	mewmB029
Cla004987	Cucurbita pepo (Zucchini)	cpewmB709
Cla004987	Silver-seed gourd	carwmB0709