CmoCh15G013910 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G013910
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	At1g32920/F9L11_25
Location	Cmo_Chr15 : 9463043 .. 9463461 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCCGCGGCTTCAAGAAACCTCTGGGAATTTGGAATCCAGAAAAGGTAAGGAAACTCCCGCTTTGTTCCCTTTATAAGCCCCTCCGCCCTCCCTCCCTTCTCCACAACCAAACCACCGCCGATCCAGCAATCAACCGCCGCATCAATTTCAAGATGAATTCCATGTTCAGTTTCTTCGATGCCTTCGCCGCCGAGATCCTCCTTGGAAAGTTCGTTACGGCTTCTACTTCTGTCCCTTCTTTCACTCCGAACACCGGCGGCGGTGGTTCTGCCTCTTCCGCTCCTGTGAAGTCGATGCCGGGAAAGAAGGAAGAAGCTAACGCCGTAGCCAAGTCCAAGAACTCGTTGATGAAGCCGAGATTCGCTCTGGAGCTCGATGGCCTCAATTGCTTTGAGACTCTCGTCCCAAATTGA

mRNA sequence

ATGAAATCCGCGGCTTCAAGAAACCTCTGGGAATTTGGAATCCAGAAAAGTTTCTTCGATGCCTTCGCCGCCGAGATCCTCCTTGGAAAGTTCGTTACGGCTTCTACTTCTGTCCCTTCTTTCACTCCGAACACCGGCGGCGGTGGTTCTGCCTCTTCCGCTCCTGTGAAGTCGATGCCGGGAAAGAAGGAAGAAGCTAACGCCGTAGCCAAGTCCAAGAACTCGTTGATGAAGCCGAGATTCGCTCTGGAGCTCGATGGCCTCAATTGCTTTGAGACTCTCGTCCCAAATTGA

Coding sequence (CDS)

ATGAAATCCGCGGCTTCAAGAAACCTCTGGGAATTTGGAATCCAGAAAAGTTTCTTCGATGCCTTCGCCGCCGAGATCCTCCTTGGAAAGTTCGTTACGGCTTCTACTTCTGTCCCTTCTTTCACTCCGAACACCGGCGGCGGTGGTTCTGCCTCTTCCGCTCCTGTGAAGTCGATGCCGGGAAAGAAGGAAGAAGCTAACGCCGTAGCCAAGTCCAAGAACTCGTTGATGAAGCCGAGATTCGCTCTGGAGCTCGATGGCCTCAATTGCTTTGAGACTCTCGTCCCAAATTGA

Homology

[Close]

BLAST of CmoCh15G013910 vs. TrEMBL
Match: A0A0A0KJT8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146930 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.1e-19
Identity = 59/81 (72.84%), Postives = 62/81 (76.54%), Query Frame = 1


Query: 17 SFFDAFAAEILLGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKEEANAVAKSKNSL 76
          S FDAFAAE LLG FV AS+SVPSFTPN     +AS A  K +P KKEE     KSKNSL
Sbjct: 6  SLFDAFAAEFLLGNFVRASSSVPSFTPNNN---NASPAVPKPLPSKKEEE---PKSKNSL 65

Query: 77 MKPRFALELDGLNCFETLVPN 98
          MKPRFALELDGLNCFETLVPN
Sbjct: 66 MKPRFALELDGLNCFETLVPN 80

[Close]

BLAST of CmoCh15G013910 vs. NCBI nr
Match: gi|778699182|ref|XP_011654674.1| (PREDICTED: uncharacterized protein LOC105435432 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 4.4e-19
Identity = 59/81 (72.84%), Postives = 62/81 (76.54%), Query Frame = 1


Query: 17 SFFDAFAAEILLGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKEEANAVAKSKNSL 76
          S FDAFAAE LLG FV AS+SVPSFTPN     +AS A  K +P KKEE     KSKNSL
Sbjct: 6  SLFDAFAAEFLLGNFVRASSSVPSFTPNNN---NASPAVPKPLPSKKEEE---PKSKNSL 65

Query: 77 MKPRFALELDGLNCFETLVPN 98
          MKPRFALELDGLNCFETLVPN
Sbjct: 66 MKPRFALELDGLNCFETLVPN 80

[Close]

BLAST of CmoCh15G013910 vs. NCBI nr
Match: gi|659074166|ref|XP_008437457.1| (PREDICTED: uncharacterized protein LOC103482873 [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 6.0e-16
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 1


Query: 17 SFFDAFAAEILLGK-FVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKEEANAVAKSKNS 76
          S FDAFAAE LLG  FV AS+S+PSFTPN     ++S+ P K +P KK+E     K KNS
Sbjct: 6  SLFDAFAAEFLLGNNFVRASSSIPSFTPNNNNNAASSAVP-KPLPSKKKEE---PKPKNS 65

Query: 77 LMKPRFALELDGLNCFETLVPN 98
           +KPRFALELDGLNCFETLVPN
Sbjct: 66 SVKPRFALELDGLNCFETLVPN 83

The following BLAST results are available for this feature:

BLAST of CmoCh15G013910 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh15G013910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJT8_CUCSA	3.1e-19	72.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146930 PE=4 SV=1	[more]

BLAST of CmoCh15G013910 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh15G013910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778699182\|ref\|XP_011654674.1\|	4.4e-19	72.84	PREDICTED: uncharacterized protein LOC105435432 [Cucumis sativus]	[more]
gi\|659074166\|ref\|XP_008437457.1\|	6.0e-16	64.63	PREDICTED: uncharacterized protein LOC103482873 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G013910.1	CmoCh15G013910.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G013910	Cucsa.193400	Cucumber (Gy14) v1	cgycmoB0562
CmoCh15G013910	Cla004987	Watermelon (97103) v1	cmowmB267
CmoCh15G013910	Csa5G146930	Cucumber (Chinese Long) v2	cmocuB286
CmoCh15G013910	ClCG01G001400	Watermelon (Charleston Gray)	cmowcgB247
CmoCh15G013910	CSPI05G04160	Wild cucumber (PI 183967)	cmocpiB295
CmoCh15G013910	Lsi09G001260	Bottle gourd (USVL1VR-Ls)	cmolsiB255
CmoCh15G013910	Cp4.1LG00g00800	Cucurbita pepo (Zucchini)	cmocpeB262
CmoCh15G013910	MELO3C005796.2	Melon (DHL92) v3.6.1	cmomedB270
CmoCh15G013910	CsaV3_5G001540	Cucumber (Chinese Long) v3	cmocucB0347
CmoCh15G013910	Cla97C01G001410	Watermelon (97103) v2	cmowmbB270
CmoCh15G013910	Bhi12G000061	Wax gourd	cmowgoB0368
CmoCh15G013910	CsGy5G001400	Cucumber (Gy14) v2	cgybcmoB583
CmoCh15G013910	Carg21317	Silver-seed gourd	carcmoB0488

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G013910	Silver-seed gourd	carcmoB0965
CmoCh15G013910	Cucurbita moschata (Rifu)	cmocmoB247
CmoCh15G013910	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G013910	Cucurbita maxima (Rimu)	cmacmoB580
CmoCh15G013910	Melon (DHL92) v3.5.1	cmomeB238
CmoCh15G013910	Cucurbita pepo (Zucchini)	cmocpeB295