Cla97C01G001410 (gene) Watermelon (97103) v2

Overview
NameCla97C01G001410
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionAvr9/Cf-9 rapidly elicited protein
LocationCla97Chr01 : 1222109 .. 1222360 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTCCATGTTCAGTTTCTTCGATGCCTTCGCCGCCGAATTGCTCCTCGGCAAATTCGTTAGGGATTCTTCCTCTGTTCCTTCCTTCACTCCTAACAACGGCGGCTCCGCCTCTTCCGCCGCTTCCGCCTCCCCGAAGTCGCTGCCGAACAAGAAAGAAGAAGCTAATTCCAAGAATTCGTCGATGAAGCCGAGATTTGCTCTGGAGTTAGATGGCCTCAATTGCTTCGAGACTCTCGTCCCGAATTGA

mRNA sequence

ATGAATTCCATGTTCAGTTTCTTCGATGCCTTCGCCGCCGAATTGCTCCTCGGCAAATTCGTTAGGGATTCTTCCTCTGTTCCTTCCTTCACTCCTAACAACGGCGGCTCCGCCTCTTCCGCCGCTTCCGCCTCCCCGAAGTCGCTGCCGAACAAGAAAGAAGAAGCTAATTCCAAGAATTCGTCGATGAAGCCGAGATTTGCTCTGGAGTTAGATGGCCTCAATTGCTTCGAGACTCTCGTCCCGAATTGA

Coding sequence (CDS)

ATGAATTCCATGTTCAGTTTCTTCGATGCCTTCGCCGCCGAATTGCTCCTCGGCAAATTCGTTAGGGATTCTTCCTCTGTTCCTTCCTTCACTCCTAACAACGGCGGCTCCGCCTCTTCCGCCGCTTCCGCCTCCCCGAAGTCGCTGCCGAACAAGAAAGAAGAAGCTAATTCCAAGAATTCGTCGATGAAGCCGAGATTTGCTCTGGAGTTAGATGGCCTCAATTGCTTCGAGACTCTCGTCCCGAATTGA

Protein sequence

MNSMFSFFDAFAAELLLGKFVRDSSSVPSFTPNNGGSASSAASASPKSLPNKKEEANSKNSSMKPRFALELDGLNCFETLVPN
Homology
[Close]
BLAST of Cla97C01G001410 vs. NCBI nr
Match: XP_023522684.1 (uncharacterized protein LOC111786686 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.8 bits (299), Expect = 4.4e-24
Identity = 64/87 (73.56%), Postives = 69/87 (79.31%), Query Frame = 0 

Query: 1  MNSMFSFFDAFAAELLLGKFVRDSSSVPSFTPNNGGSAXXXXXXXXKSLPNKKEEAN--- 60
          MNSMFSFFDAFAAE+L+GKFV  S+SVPSFTPN GG          KS+P KK+EAN   
Sbjct: 1  MNSMFSFFDAFAAEILIGKFVTASTSVPSFTPNTGGGG-SASSAPVKSMPGKKDEANAVA 60

Query: 61 -SKNSSMKPRFALELDGLNCFETLVPN 84
           SKNSSMKPRFALELDGLNCFETLVPN
Sbjct: 61 KSKNSSMKPRFALELDGLNCFETLVPN 86

[Close]
BLAST of Cla97C01G001410 vs. NCBI nr
Match: XP_022929066.1 (uncharacterized protein LOC111435766 [Cucurbita moschata])

HSP 1 Score: 119.4 bits (298), Expect = 5.8e-24
Identity = 65/87 (74.71%), Postives = 68/87 (78.16%), Query Frame = 0 

Query: 1  MNSMFSFFDAFAAELLLGKFVRDSSSVPSFTPNNGGSAXXXXXXXXKSLPNKKEEAN--- 60
          MNSMFSFFDAFAAE+LLGKFV  S+SVPSFTPN GG          KS+P KKEEAN   
Sbjct: 1  MNSMFSFFDAFAAEILLGKFVTASTSVPSFTPNTGGGG-SASSAPVKSMPGKKEEANAVA 60

Query: 61 -SKNSSMKPRFALELDGLNCFETLVPN 84
           SKNS MKPRFALELDGLNCFETLVPN
Sbjct: 61 KSKNSLMKPRFALELDGLNCFETLVPN 86

[Close]
BLAST of Cla97C01G001410 vs. NCBI nr
Match: XP_011654674.1 (PREDICTED: uncharacterized protein LOC105435432 [Cucumis sativus] >KGN49970.1 hypothetical protein Csa_5G146930 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 7.1e-22
Identity = 62/84 (73.81%), Postives = 65/84 (77.38%), Query Frame = 0 

Query: 1  MNSMFSFFDAFAAELLLGKFVRDSSSVPSFTPNNGGSAXXXXXXXXKSLPNKK-EEANSK 60
          MNSMFS FDAFAAE LLG FVR SSSVPSFTPNN  ++        K LP+KK EE  SK
Sbjct: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNNNAS----PAVPKPLPSKKEEEPKSK 60

Query: 61 NSSMKPRFALELDGLNCFETLVPN 84
          NS MKPRFALELDGLNCFETLVPN
Sbjct: 61 NSLMKPRFALELDGLNCFETLVPN 80

[Close]
BLAST of Cla97C01G001410 vs. NCBI nr
Match: XP_022159727.1 (uncharacterized protein LOC111026066 [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 8.1e-10
Identity = 43/82 (52.44%), Postives = 51/82 (62.20%), Query Frame = 0 

Query: 1  MNSMFSFFDAFAAELLLGKFVRDSSSVPSFTPNNGGSAXXXXXXXXKSLPNKKEEANSKN 60
          MNSMFS FDAFAAELL+ K  R SS   SF PNNG            +  N ++  ++KN
Sbjct: 1  MNSMFSLFDAFAAELLMAKTFRASS---SFAPNNGSGGSVKSPPSNAAPDNLEQPKSNKN 60

Query: 61 SSMK-PRFALELDGLNCFETLV 82
          S ++ PR A E DGLNCFETLV
Sbjct: 61 SLLRPPRLAPEFDGLNCFETLV 79

[Close]
BLAST of Cla97C01G001410 vs. NCBI nr
Match: NP_001031132.1 (Avr9/Cf-9 rapidly elicited protein [Arabidopsis thaliana] >BAD93886.1 hypothetical protein [Arabidopsis thaliana] >ABF59412.1 unknown protein [Arabidopsis thaliana] >AEE31540.1 Avr9/Cf-9 rapidly elicited protein [Arabidopsis thaliana] >OAP17843.1 hypothetical protein AXX17_AT1G33640 [Arabidopsis thaliana])

HSP 1 Score: 59.7 bits (143), Expect = 5.5e-06
Identity = 41/84 (48.81%), Postives = 50/84 (59.52%), Query Frame = 0 

Query: 1  MNSMFSFFDAFAAELLLGKFVRDSSSVPSFTPNNGGSAXXXXXXXXKSLPNKKEEANSKN 60
          MNSMFS FDA  AE ++GK V  +S V   +  N  S+         SL  KK+E  SKN
Sbjct: 1  MNSMFSAFDAMCAE-IMGKKVTAASYVYR-SERNSASSSSSVGGQNASLSLKKDEKASKN 60

Query: 61 SSM---KPRFALELDGLNCFETLV 82
            +    PRFALELDGL+CFET+V
Sbjct: 61 MDLPTKTPRFALELDGLHCFETIV 82

[Close]
BLAST of Cla97C01G001410 vs. TrEMBL
Match: tr|A0A0A0KJT8|A0A0A0KJT8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146930 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.7e-22
Identity = 62/84 (73.81%), Postives = 65/84 (77.38%), Query Frame = 0 

Query: 1  MNSMFSFFDAFAAELLLGKFVRDSSSVPSFTPNNGGSAXXXXXXXXKSLPNKK-EEANSK 60
          MNSMFS FDAFAAE LLG FVR SSSVPSFTPNN  ++        K LP+KK EE  SK
Sbjct: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNNNAS----PAVPKPLPSKKEEEPKSK 60

Query: 61 NSSMKPRFALELDGLNCFETLVPN 84
          NS MKPRFALELDGLNCFETLVPN
Sbjct: 61 NSLMKPRFALELDGLNCFETLVPN 80

[Close]
BLAST of Cla97C01G001410 vs. TrEMBL
Match: tr|Q56XA0|Q56XA0_ARATH (Avr9/Cf-9 rapidly elicited protein OS=Arabidopsis thaliana OX=3702 GN=At1g32928 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.6e-06
Identity = 41/84 (48.81%), Postives = 50/84 (59.52%), Query Frame = 0 

Query: 1  MNSMFSFFDAFAAELLLGKFVRDSSSVPSFTPNNGGSAXXXXXXXXKSLPNKKEEANSKN 60
          MNSMFS FDA  AE ++GK V  +S V   +  N  S+         SL  KK+E  SKN
Sbjct: 1  MNSMFSAFDAMCAE-IMGKKVTAASYVYR-SERNSASSSSSVGGQNASLSLKKDEKASKN 60

Query: 61 SSM---KPRFALELDGLNCFETLV 82
            +    PRFALELDGL+CFET+V
Sbjct: 61 MDLPTKTPRFALELDGLHCFETIV 82

[Close]
BLAST of Cla97C01G001410 vs. TrEMBL
Match: tr|A0A178WK55|A0A178WK55_ARATH (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g33640 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.6e-06
Identity = 41/84 (48.81%), Postives = 50/84 (59.52%), Query Frame = 0 

Query: 1  MNSMFSFFDAFAAELLLGKFVRDSSSVPSFTPNNGGSAXXXXXXXXKSLPNKKEEANSKN 60
          MNSMFS FDA  AE ++GK V  +S V   +  N  S+         SL  KK+E  SKN
Sbjct: 1  MNSMFSAFDAMCAE-IMGKKVTAASYVYR-SERNSASSSSSVGGQNASLSLKKDEKASKN 60

Query: 61 SSM---KPRFALELDGLNCFETLV 82
            +    PRFALELDGL+CFET+V
Sbjct: 61 MDLPTKTPRFALELDGLHCFETIV 82

[Close]
BLAST of Cla97C01G001410 vs. TrEMBL
Match: tr|A0MDW3|A0MDW3_ARATH (Uncharacterized protein (Fragment) OS=Arabidopsis thaliana OX=3702 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.6e-06
Identity = 41/84 (48.81%), Postives = 50/84 (59.52%), Query Frame = 0 

Query: 1  MNSMFSFFDAFAAELLLGKFVRDSSSVPSFTPNNGGSAXXXXXXXXKSLPNKKEEANSKN 60
          MNSMFS FDA  AE ++GK V  +S V   +  N  S+         SL  KK+E  SKN
Sbjct: 1  MNSMFSAFDAMCAE-IMGKKVTAASYVYR-SERNSASSSSSVGGQNASLSLKKDEKASKN 60

Query: 61 SSM---KPRFALELDGLNCFETLV 82
            +    PRFALELDGL+CFET+V
Sbjct: 61 MDLPTKTPRFALELDGLHCFETIV 82

[Close]
BLAST of Cla97C01G001410 vs. TrEMBL
Match: tr|V4L1D3|V4L1D3_EUTSA (Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10009742mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.2e-06
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 0 

Query: 1  MNSMFSFFDAFAAELLLGKFVRDS--SSVPSFTPNNGGSAXXXXXXXXKSLPNKKEEANS 60
          MNSMFS FDA  AE++  KF  DS  S V + +     +          SL  KK+E  +
Sbjct: 1  MNSMFSAFDAMCAEIMGKKFTADSSVSYVCNRSKRKNSAPSGAGGQIASSL--KKDEKAA 60

Query: 61 KNSSMKPRFALELDGLNCFETLV 82
           +++ +PRFALELDG++CFET+V
Sbjct: 61 NSATKQPRFALELDGIHCFETIV 81

[Close]
BLAST of Cla97C01G001410 vs. TAIR10
Match: AT1G32928.1 (unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 9.9e-10
Identity = 41/84 (48.81%), Postives = 50/84 (59.52%), Query Frame = 0 

Query: 1  MNSMFSFFDAFAAELLLGKFVRDSSSVPSFTPNNGGSAXXXXXXXXKSLPNKKEEANSKN 60
          MNSMFS FDA  AE ++GK V  +S V   +  N  S+         SL  KK+E  SKN
Sbjct: 1  MNSMFSAFDAMCAE-IMGKKVTAASYVYR-SERNSASSSSSVGGQNASLSLKKDEKASKN 60

Query: 61 SSM---KPRFALELDGLNCFETLV 82
            +    PRFALELDGL+CFET+V
Sbjct: 61 MDLPTKTPRFALELDGLHCFETIV 82

[Close]
BLAST of Cla97C01G001410 vs. TAIR10
Match: AT1G32920.1 (unknown protein)

HSP 1 Score: 48.5 bits (114), Expect = 2.3e-06
Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = 0 

Query: 1  MNSMFSFFDAFAAELLLGKFVRDSSSVPSFTPNNGGSAXXXXXXXXKSLPNKKEEANSKN 60
          MNSMFS FDA  AE ++GK +  SS   +       +A        ++   +K  A+SK 
Sbjct: 1  MNSMFSAFDALFAE-VMGKNLMASSFTATTATTKPAAA-------PQTQTQEKANASSKK 60

Query: 61 SSMK---PRFALELDGLNCFETLV 82
            +    PRFALELDGL+CFET+V
Sbjct: 61 IGLVQKIPRFALELDGLHCFETIV 76

The following BLAST results are available for this feature:
BLAST of Cla97C01G001410 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023522684.14.4e-2473.56uncharacterized protein LOC111786686 [Cucurbita pepo subsp. pepo][more]
XP_022929066.15.8e-2474.71uncharacterized protein LOC111435766 [Cucurbita moschata][more]
XP_011654674.17.1e-2273.81PREDICTED: uncharacterized protein LOC105435432 [Cucumis sativus] >KGN49970.1 hy... [more]
XP_022159727.18.1e-1052.44uncharacterized protein LOC111026066 [Momordica charantia][more]
NP_001031132.15.5e-0648.81Avr9/Cf-9 rapidly elicited protein [Arabidopsis thaliana] >BAD93886.1 hypothetic... [more]
BLAST of Cla97C01G001410 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KJT8|A0A0A0KJT8_CUCSA4.7e-2273.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146930 PE=4 SV=1[more]
tr|Q56XA0|Q56XA0_ARATH3.6e-0648.81Avr9/Cf-9 rapidly elicited protein OS=Arabidopsis thaliana OX=3702 GN=At1g32928 ... [more]
tr|A0A178WK55|A0A178WK55_ARATH3.6e-0648.81Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g33640 PE=4 ... [more]
tr|A0MDW3|A0MDW3_ARATH3.6e-0648.81Uncharacterized protein (Fragment) OS=Arabidopsis thaliana OX=3702 PE=4 SV=1[more]
tr|V4L1D3|V4L1D3_EUTSA6.2e-0643.37Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10009742mg PE=... [more]
BLAST of Cla97C01G001410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C01G001410 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G32928.19.9e-1048.81unknown protein[more]
AT1G32920.12.3e-0641.67unknown protein[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G001410.1Cla97C01G001410.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..64
NoneNo IPR availablePANTHERPTHR33641:SF10SUBFAMILY NOT NAMEDcoord: 1..81
NoneNo IPR availablePANTHERPTHR33641FAMILY NOT NAMEDcoord: 1..81

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C01G001410Cla004987Watermelon (97103) v1wmwmbB235
Cla97C01G001410Csa5G146930Cucumber (Chinese Long) v2cuwmbB336
Cla97C01G001410ClCG01G001400Watermelon (Charleston Gray)wcgwmbB089
Cla97C01G001410CSPI05G04160Wild cucumber (PI 183967)cpiwmbB349
Cla97C01G001410Cucsa.193400Cucumber (Gy14) v1cgywmbB357
Cla97C01G001410CmoCh15G013910Cucurbita moschata (Rifu)cmowmbB270
Cla97C01G001410Lsi09G001260Bottle gourd (USVL1VR-Ls)lsiwmbB007
Cla97C01G001410CsGy5G001400Cucumber (Gy14) v2cgybwmbB319
Cla97C01G001410Carg21317Silver-seed gourdcarwmbB0376
Cla97C01G001410CsaV3_5G001540Cucumber (Chinese Long) v3cucwmbB351
Cla97C01G001410Bhi12G000061Wax gourdwgowmbB055
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G001410Silver-seed gourdcarwmbB0739
Cla97C01G001410Cucurbita maxima (Rimu)cmawmbB288
Cla97C01G001410Cucurbita maxima (Rimu)cmawmbB605
Cla97C01G001410Cucurbita moschata (Rifu)cmowmbB581
Cla97C01G001410Melon (DHL92) v3.6.1medwmbB006
Cla97C01G001410Melon (DHL92) v3.5.1mewmbB008