Csa5G126730 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G126730
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	cDNA clone:J023109D15, full insert sequence; contains IPR004038 (Ribosomal protein L7Ae/L30e/S12e/Gadd45)
Location	Chr5 : 3128802 .. 3129608 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACTTTTACCTCTATTTTGAATATGTATTCTTTATATCATTCTAGTTCAGCGGTGAATGTCATTGTGAATTCCTTAGGACAGGCATCCTTTTTATGCTTGATGTATAACTCAAGTGCAATTAAACCCAACTTATCATGCTTTGTCTACTATCTTTTCTGTATGCAGCGTCTAATTTATTCGAAATTTCACCTTTTATTGTGTAGGCTATACTGTTAACAGCCAATTGCAACCCCCGATGGCTTACAAACCATGTGCCAACCTTGGCCATGTCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAAGGATCATTAAGGTTAGGTGAACTCGTTAGCCTTAAAACAGCAATTGCAATTGGAATAAAGGTGAGTAGGAAATATTAGATTTTTTATGTGATGTGTTCTGTTCTAACTTTTTCCTTTTTCTAACAAAGCTGCATGTTTCCAAACGAACTGCAGGCGAATGGGAGCCCTATTAATCAACTCATTGATGAAATCCTTCAAAGAACAACATAAAGACACGTTTCATGGGTACAACAAAGTTGTCTGGTGTTCACTGTACAGTAAAAAAAAAAGTGAAATTGAAGCATGTTCTCGTCTTCTTCCCTGTAGCAGTCTTGATATGTGTTCGAGTTGATTCATTGTAGATAATGGCCACCACTTTAGTTGGAAAGATAGCTCGTAGAATTGGGAAGTATTGATCTTTTGAAAAGGGACATTGTTTGTGGCCGGAGTTGAGTGGATATATTTCTTTATTTTAAAATGTTATATTCATAATTTTGACCTATTAAAGACCGA

mRNA sequence

ATGGAAAACTTTTACCTCTATTTTGAATATGCTATACTGTTAACAGCCAATTGCAACCCCCGATGGCTTACAAACCATGTGCCAACCTTGGCCATGTCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAAGGATCATTAAGGTTAGGTGAACTCGTTAGCCTTAAAACAGCAATTGCAATTGGAATAAAGGCGAATGGGAGCCCTATTAATCAACTCATTGATGAAATCCTTCAAAGAACAACATAA

Coding sequence (CDS)

ATGGAAAACTTTTACCTCTATTTTGAATATGCTATACTGTTAACAGCCAATTGCAACCCCCGATGGCTTACAAACCATGTGCCAACCTTGGCCATGTCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAAGGATCATTAAGGTTAGGTGAACTCGTTAGCCTTAAAACAGCAATTGCAATTGGAATAAAGGCGAATGGGAGCCCTATTAATCAACTCATTGATGAAATCCTTCAAAGAACAACATAA

Protein sequence

MENFYLYFEYAILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRTT*

Homology

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BLAST of Csa5G126730 vs. TrEMBL
Match: A0A0A0KLN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G126730 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-38
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 1  MENFYLYFEYAILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAI 60
          MENFYLYFEYAILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAI
Sbjct: 1  MENFYLYFEYAILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAI 60

Query: 61 AIGIKANGSPINQLIDEILQRTT 84
          AIGIKANGSPINQLIDEILQRTT
Sbjct: 61 AIGIKANGSPINQLIDEILQRTT 83

[Close]

BLAST of Csa5G126730 vs. TrEMBL
Match: A0A061DZK2_THECC (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative OS=Theobroma cacao GN=TCM_004947 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.7e-21
Identity = 55/70 (78.57%), Postives = 62/70 (88.57%), Query Frame = 1


Query: 11  AILLTANCNPRWLTNHVPTLAMSRKVPLILVKD-KEGSLRLGELVSLKTAIAIGIKANGS 70
           AILL A+CNPRWLT H+PTLA SRKVPLI VKD K+GSLRLGELV LKTAIAIG+KA G+
Sbjct: 93  AILLAADCNPRWLTKHLPTLASSRKVPLIFVKDNKKGSLRLGELVKLKTAIAIGVKARGN 152

Query: 71  PINQLIDEIL 80
            INQ+I+EIL
Sbjct: 153 AINQIIEEIL 162

[Close]

BLAST of Csa5G126730 vs. TrEMBL
Match: A0A0D2SBS2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G117100 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.3e-21
Identity = 53/70 (75.71%), Postives = 63/70 (90.00%), Query Frame = 1


Query: 11  AILLTANCNPRWLTNHVPTLAMSRKVPLILVK-DKEGSLRLGELVSLKTAIAIGIKANGS 70
           AILL A+CNP+WLT H+PTLA SRKVPLI+VK DK+GSLRLGELV LKTA+AIG+KA GS
Sbjct: 94  AILLAADCNPKWLTKHLPTLAKSRKVPLIIVKDDKKGSLRLGELVKLKTAVAIGVKARGS 153

Query: 71  PINQLIDEIL 80
            INQ+++EIL
Sbjct: 154 AINQIMEEIL 163

[Close]

BLAST of Csa5G126730 vs. TrEMBL
Match: A0A059DEG5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01003 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-19
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 1


Query: 11  AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKE-GSLRLGELVSLKTAIAIGIKANGS 70
           AILL ++CNPRWLT H+P+LA+SRKVPLI VKDK+ GSLRLGELV+LKTAIAIGIKA G+
Sbjct: 110 AILLASDCNPRWLTRHLPSLALSRKVPLIFVKDKKRGSLRLGELVNLKTAIAIGIKAKGN 169

Query: 71  PINQLIDEIL 80
            +N +I +IL
Sbjct: 170 AVNHIIQKIL 179

[Close]

BLAST of Csa5G126730 vs. TrEMBL
Match: M5XUD4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011899mg PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.7e-19
Identity = 49/74 (66.22%), Postives = 64/74 (86.49%), Query Frame = 1


Query: 11  AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEG-SLRLGELVSLKTAIAIGIKANGS 70
           A+L+ ++CNPRWL+ H+P+LA+SRKVPLI +KD +G SLRLG+LV LKTAIAIG+KA G+
Sbjct: 95  AVLIASDCNPRWLSKHLPSLALSRKVPLIFLKDNKGASLRLGQLVQLKTAIAIGVKAKGN 154

Query: 71  PINQLIDEILQRTT 84
            INQLI+EIL+  T
Sbjct: 155 AINQLIEEILRGNT 168

[Close]

BLAST of Csa5G126730 vs. TAIR10
Match: AT4G01790.1 (AT4G01790.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 85.1 bits (209), Expect = 2.2e-17
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 1


Query: 12  ILLTANCNPRWLTNHVPTLAMSRKVPLILVKD-KEGSLRLGELVSLKTAIAIGIKANGSP 71
           ++L A+C PR LT H+P LA SR VP++ V+D K  SLRLGELV LKTA+AIGIKA G+ 
Sbjct: 95  VILVADCKPRMLTKHIPNLAASRNVPVLYVRDNKRASLRLGELVKLKTALAIGIKARGND 154

Query: 72  INQLIDEILQR 82
           +N L+ +IL R
Sbjct: 155 LNLLLKQILPR 165

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BLAST of Csa5G126730 vs. NCBI nr
Match: gi|700194607|gb|KGN49784.1| (hypothetical protein Csa_5G126730 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.6e-38
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 1  MENFYLYFEYAILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAI 60
          MENFYLYFEYAILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAI
Sbjct: 1  MENFYLYFEYAILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAI 60

Query: 61 AIGIKANGSPINQLIDEILQRTT 84
          AIGIKANGSPINQLIDEILQRTT
Sbjct: 61 AIGIKANGSPINQLIDEILQRTT 83

[Close]

BLAST of Csa5G126730 vs. NCBI nr
Match: gi|778698540|ref|XP_011654557.1| (PREDICTED: uncharacterized protein LOC101221016 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 8.8e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 11  AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP 70
           AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP
Sbjct: 99  AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP 158

Query: 71  INQLIDEILQRTT 84
           INQLIDEILQRTT
Sbjct: 159 INQLIDEILQRTT 171

[Close]

BLAST of Csa5G126730 vs. NCBI nr
Match: gi|659072577|ref|XP_008466263.1| (PREDICTED: uncharacterized protein LOC103503720 isoform X2 [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 3.3e-31
Identity = 71/78 (91.03%), Postives = 74/78 (94.87%), Query Frame = 1


Query: 5   YLYFEYAILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGI 64
           YL F  AILLTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGI
Sbjct: 109 YLGFRLAILLTANCNPRWLTNHVPCLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGI 168

Query: 65  KANGSPINQLIDEILQRT 83
           K+NGSP+NQLIDEILQRT
Sbjct: 169 KSNGSPVNQLIDEILQRT 186

[Close]

BLAST of Csa5G126730 vs. NCBI nr
Match: gi|659072579|ref|XP_008466271.1| (PREDICTED: uncharacterized protein LOC103503720 isoform X3 [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 3.3e-31
Identity = 71/78 (91.03%), Postives = 74/78 (94.87%), Query Frame = 1


Query: 5   YLYFEYAILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGI 64
           YL F  AILLTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGI
Sbjct: 108 YLGFRLAILLTANCNPRWLTNHVPCLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGI 167

Query: 65  KANGSPINQLIDEILQRT 83
           K+NGSP+NQLIDEILQRT
Sbjct: 168 KSNGSPVNQLIDEILQRT 185

[Close]

BLAST of Csa5G126730 vs. NCBI nr
Match: gi|659072575|ref|XP_008466254.1| (PREDICTED: uncharacterized protein LOC103503720 isoform X1 [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 3.3e-31
Identity = 71/78 (91.03%), Postives = 74/78 (94.87%), Query Frame = 1


Query: 5   YLYFEYAILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGI 64
           YL F  AILLTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGI
Sbjct: 110 YLGFRLAILLTANCNPRWLTNHVPCLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGI 169

Query: 65  KANGSPINQLIDEILQRT 83
           K+NGSP+NQLIDEILQRT
Sbjct: 170 KSNGSPVNQLIDEILQRT 187

The following BLAST results are available for this feature:

BLAST of Csa5G126730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLN6_CUCSA	1.1e-38	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G126730 PE=4 SV=1	[more]
A0A061DZK2_THECC	3.7e-21	78.57	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative OS=Theobroma ca...	[more]
A0A0D2SBS2_GOSRA	6.3e-21	75.71	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G117100 PE=4 SV=1	[more]
A0A059DEG5_EUCGR	1.6e-19	72.86	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01003 PE=4 SV=1	[more]
M5XUD4_PRUPE	2.7e-19	66.22	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011899mg PE=4 SV=1	[more]

BLAST of Csa5G126730 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G01790.1	2.2e-17	59.15	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

BLAST of Csa5G126730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194607\|gb\|KGN49784.1\|	1.6e-38	100.00	hypothetical protein Csa_5G126730 [Cucumis sativus]	[more]
gi\|778698540\|ref\|XP_011654557.1\|	8.8e-32	100.00	PREDICTED: uncharacterized protein LOC101221016 [Cucumis sativus]	[more]
gi\|659072577\|ref\|XP_008466263.1\|	3.3e-31	91.03	PREDICTED: uncharacterized protein LOC103503720 isoform X2 [Cucumis melo]	[more]
gi\|659072579\|ref\|XP_008466271.1\|	3.3e-31	91.03	PREDICTED: uncharacterized protein LOC103503720 isoform X3 [Cucumis melo]	[more]
gi\|659072575\|ref\|XP_008466254.1\|	3.3e-31	91.03	PREDICTED: uncharacterized protein LOC103503720 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004038	Ribosomal_L7Ae/L30e/S12e/Gad45

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G126730.1	Csa5G126730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 12..69 score: 2.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G126730	Cla005860	Watermelon (97103) v1	cuwmB409
Csa5G126730	MELO3C005192	Melon (DHL92) v3.5.1	cumeB362
Csa5G126730	ClCG01G007180	Watermelon (Charleston Gray)	cuwcgB365
Csa5G126730	MELO3C005192.2	Melon (DHL92) v3.6.1	cumedB340
Csa5G126730	Cla97C01G007590	Watermelon (97103) v2	cuwmbB337
Csa5G126730	Bhi12G000908	Wax gourd	cuwgoB439
Csa5G126730	CSPI05G02430	Wild cucumber (PI 183967)	cpicuB240
Csa5G126730	Cucsa.374210	Cucumber (Gy14) v1	cgycuB523
Csa5G126730	CmaCh15G008570	Cucurbita maxima (Rimu)	cmacuB302
Csa5G126730	CmoCh15G008890	Cucurbita moschata (Rifu)	cmocuB290
Csa5G126730	Cp4.1LG13g06130	Cucurbita pepo (Zucchini)	cpecuB178
Csa5G126730	CsGy5G012500	Cucumber (Gy14) v2	cgybcuB225
Csa5G126730	Carg01350	Silver-seed gourd	carcuB0842

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G126730	Silver-seed gourd	carcuB0511
Csa5G126730	Cucurbita maxima (Rimu)	cmacuB727
Csa5G126730	Cucurbita moschata (Rifu)	cmocuB719
Csa5G126730	Cucurbita pepo (Zucchini)	cpecuB420
Csa5G126730	Bottle gourd (USVL1VR-Ls)	culsiB323