ClCG01G007180 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G007180
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Ribosomal protein L7Ae/L30e/S12e/Gadd45
Location	CG_Chr01 : 8248251 .. 8250893 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTGCTAGTTCGTCTTCGTCCCGTTCCACTACGGTGTCTTCTAAATCGGAGAACGCCGCCGTTATTCCTCTCCAGACTTTGAAGCTTCACTTTCCAGCAAGTTTTCAGTCATGGGAAAGAAGGCTAAATCTTCTGCTCCTGTTGCACTCGTTCAATCCAAACCTAACGAAGAGTATGCCTGCTTTCTTTTTGACTTTCATGCTTTTCGGACCTTTTCCCCCTTCTTCTCCATTCGATTTCTTACCTTGATGTTTTTGCCCTAATTTTTAATGGAATACGTTTTTCGGAATTTGATTAACGCAGTTCCTATGAAGGGGAACGTCTCGATGAGTTGCTACAATCGATTCAGAGGTAAACAATGGTTAAAATATCTAATAATGCACTTCAATCCACCAGTAACCGATCCTTGTTTTTAACAGAGAGATAAAGACAGCAAGATTTCTGAATGCGGAATCCTTGCCGGAAAAAATTTGGCTTAAGGTTTCCTCTAATCCTTATGTTTCAACGTCTTTAGTTTCTCCTTTCCATATCATGTCGATAATGTTTTTTGCTATTAGTTATAAGCTACTTACCTTGAGTGATGGGATTCTCTTTAGAAACAATTCGCAATTGGAGTTAATGAAGTTACTAGAGTCCTTGAACGGATGACACCAAGTGGAGATTCTGCTCGCATAATGAACCCTAATTTTAAGGCGTGTACAGTCAGGCTTCAGGTAGTCTACTCTTGTATTTATGTTGGGCAATGCCATCTTGATCTTGGGTTTAGAGGAATTTGCCGAATGGTTAATTAATAGAATCCTAGCTTTACCCTCCTACGGCAGTGTTGTTGAACTTCACTTTATTATTTCTGGTGGATTGATGGACCCTTCATTAGCTCGAAGCCATAAGTGTTTCTTTATTGGGTTTGTTTCAGTTTTGTGTCAATCTCATGCGTGCAACATGGATGTATTTATAATGTGTGTGTGTCTTTCATGGGAAGAGGCAACCATTTTCAAACATGAGCTACATGTGGAGCTTCCATGAACTTTGCCGCTTTGGTGATAAGCTGGTTTCCTTAAACTTCATAAAGCCCTCATTATTTTCATATAACTGGTGTCAAATGATATCAACAAAATCCTTAATGTCGTTAGCACGGTTACAAGCGTTCATGGGGAGTATGCTATTTTATTGGTATAGCCCATGAGCTGTACTTGGCCACAGTAGAAAACTTCTACAAGAATGACCCATTGTTTTGTATCCTACAGAGTGTTGTCTGTTTGTGAAGTACCCCATCTCAATGCTTGGTACTAGTACAAAGCAAATTTATTGGCCATGACATAGTGTTTCTTGTGTAGCAAGAACTGGGATGAGGCTTTGAACTCCTATTGGTAAGTACTATTTCCTCCCTGGTAACCTTAGTTTCCCACTAAAACATTCCATAGGCTTACCATTCTTAGATAGAACTGCTCCTATCCCTTTAGCAGAAGCATCCATCTGGACTTTATTGATTCCATTACGGATCCTAAGAATAACTGTTTTGTAACAAGCATGCACTTAGAGATATTAAAGTAAAACTTGGTGGAATTTGAAGCAGTTTGTCGCCTAAGTAGACAATTAGGAACTAACCAATGTATGGTCATAATACATGTATCATGAGGCACGTAAAAGTACTTGGAGCATTGATCGAGCTAAAACCTACATGCACCACTTGCCTTACTTATAAAGACTTATCTGAGTCTTAAAAGGCTATTTTTCATTTTCTCTTGGTTTGATTGCTGTGACTGCTTAATTGGCCAACAAGTTTTGGTGGTGGTGTCATTTTGTACAGGGAGTTAATATTTTATGGCAAGCTTCAAACTCTATTTCCAATACCAACTCTTTGTACCTTTCTAGTTCAGCAGTGAATGCCATTGTGAATTCCTTAGGACAGGCATCCTTTCTATGCTTGATATATAACTCTCAAATGTTAATTAAACCCAACTTATCATGCTTTTCCTACTGTCTTTTCTGTATATGGTGTCTAATTAATTCGACATTTCACCTTTTATTTTGTAGGCGATACTGTTAACAGCTAACTGCAACCCTCGATGGCTGACAAACCACGTGCCAAGCTTGGCCATGTCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAGGGATCATTAAGGTTAGGTGAACTCGTTAACCTTAAAACAGCAATCGCAATTGGAATAAAGGTAAGGAGGAAATATTAGATCTACGATTCTTTCATGTGTTGTGTTGTGTTCAACTTTTTTTCCTTTTTTTAACAAAGCTGCATGTTTCCAAACGAATTGCAGGCGAATGGAAGCCCTGTTAATCAACTTATTGATGAAATTCTTCAAAGAACAACATGAAAACACGTTTCTTGGGTACGACAAAGTTGTCTGGTGTACAGCAAAAATGATACGAAATTGAAGCAAATTCTTCCCTCTAGCAGTCTGAAATTTCTAGCTTGCTAATCACATGAAATGGATTGAGTTGATTCATTCTAGATAACGACCACCACTATGGTTGGAAAGATAGTTCATTAGACTTAGTTGGAAATAATGTATGAAAGTATGGTGGTGGGATTTATAAGTACAATTGGTTTAAGGGTATTCGAACCAGACTTCGTGGTCATTAACATGTCCGTATGTCAA

mRNA sequence

AGTGCTAGTTCGTCTTCGTCCCGTTCCACTACGGTGTCTTCTAAATCGGAGAACGCCGCCGTTATTCCTCTCCAGACTTTGAAGCTTCACTTTCCAGCAAGTTTTCAGTCATGGGAAAGAAGGCTAAATCTTCTGCTCCTGTTGCACTCGTTCAATCCAAACCTAACGAAGATTCCTATGAAGGGGAACGTCTCGATGAGTTGCTACAATCGATTCAGAGAGAGATAAAGACAGCAAGATTTCTGAATGCGGAATCCTTGCCGGAAAAAATTTGGCTTAAGAAACAATTCGCAATTGGAGTTAATGAAGTTACTAGAGTCCTTGAACGGATGACACCAAGTGGAGATTCTGCTCGCATAATGAACCCTAATTTTAAGGCGTGTACAGTCAGGCTTCAGGCGATACTGTTAACAGCTAACTGCAACCCTCGATGGCTGACAAACCACGTGCCAAGCTTGGCCATGTCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAGGGATCATTAAGGTTAGGTGAACTCGTTAACCTTAAAACAGCAATCGCAATTGGAATAAAGGCGAATGGAAGCCCTGTTAATCAACTTATTGATGAAATTCTTCAAAGAACAACATGAAAACACGTTTCTTGGGTACGACAAAGTTGTCTGGTGTACAGCAAAAATGATACGAAATTGAAGCAAATTCTTCCCTCTAGCAGTCTGAAATTTCTAGCTTGCTAATCACATGAAATGGATTGAGTTGATTCATTCTAGATAACGACCACCACTATGGTTGGAAAGATAGTTCATTAGACTTAGTTGGAAATAATGTATGAAAGTATGGTGGTGGGATTTATAAGTACAATTGGTTTAAGGGTATTCGAACCAGACTTCGTGGTCATTAACATGTCCGTATGTCAA

Coding sequence (CDS)

ATGGGAAAGAAGGCTAAATCTTCTGCTCCTGTTGCACTCGTTCAATCCAAACCTAACGAAGATTCCTATGAAGGGGAACGTCTCGATGAGTTGCTACAATCGATTCAGAGAGAGATAAAGACAGCAAGATTTCTGAATGCGGAATCCTTGCCGGAAAAAATTTGGCTTAAGAAACAATTCGCAATTGGAGTTAATGAAGTTACTAGAGTCCTTGAACGGATGACACCAAGTGGAGATTCTGCTCGCATAATGAACCCTAATTTTAAGGCGTGTACAGTCAGGCTTCAGGCGATACTGTTAACAGCTAACTGCAACCCTCGATGGCTGACAAACCACGTGCCAAGCTTGGCCATGTCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAGGGATCATTAAGGTTAGGTGAACTCGTTAACCTTAAAACAGCAATCGCAATTGGAATAAAGGCGAATGGAAGCCCTGTTAATCAACTTATTGATGAAATTCTTCAAAGAACAACATGA

Protein sequence

MGKKAKSSAPVALVQSKPNEDSYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQAILLTANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIDEILQRTT

Homology

[Close]

BLAST of ClCG01G007180 vs. TrEMBL
Match: A0A059DEG5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01003 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.3e-45
Identity = 107/179 (59.78%), Postives = 129/179 (72.07%), Query Frame = 1


Query: 1   MGKKAKSSAPVALVQSKP-------NEDSYEGERLDELLQSIQREIKTARFLNAESLPEK 60
           M  + K+  P     +KP       +  ++EGE L  LL+SIQ +IK AR L+ E+LPEK
Sbjct: 1   MRNRNKAPKPAPPEPAKPGSGPQEQDRSTFEGESLGLLLESIQGKIKAARSLDGEALPEK 60

Query: 61  IWLKKQFAIGVNEVTRVLERMTPSGDS------ARIMNPNFKACTVRLQAILLTANCNPR 120
           IWLK+QFAIGVNEVTRVLERM PS D+        +M+ N  A   RLQAILL ++CNPR
Sbjct: 61  IWLKQQFAIGVNEVTRVLERMPPSNDADDCPLEESLMSSNDNASYPRLQAILLASDCNPR 120

Query: 121 WLTNHVPSLAMSRKVPLILVKDKE-GSLRLGELVNLKTAIAIGIKANGSPVNQLIDEIL 166
           WLT H+PSLA+SRKVPLI VKDK+ GSLRLGELVNLKTAIAIGIKA G+ VN +I +IL
Sbjct: 121 WLTRHLPSLALSRKVPLIFVKDKKRGSLRLGELVNLKTAIAIGIKAKGNAVNHIIQKIL 179

[Close]

BLAST of ClCG01G007180 vs. TrEMBL
Match: A0A151SSA2_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_003896 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.3e-44
Identity = 98/171 (57.31%), Postives = 126/171 (73.68%), Query Frame = 1


Query: 2   GKKAKSSAPVALVQSKPNEDSYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFA 61
           G K  S++ +A  ++    + YEGERL  LLQSI REI++ R L+  SLPEKIW K+QF+
Sbjct: 14  GNKNNSNSSIASQEN----NCYEGERLTSLLQSIHREIQSTRLLDGSSLPEKIWFKQQFS 73

Query: 62  IGVNEVTRVLERMTPSGDSARI-----MNPNFKACTVRLQAILLTANCNPRWLTNHVPSL 121
           IGVN+VTRVLERM P  +  R      +  N KA +V+LQA+L+ ++CNPRWLT H+PSL
Sbjct: 74  IGVNDVTRVLERMNPCTELERSAELFPLRRNHKASSVKLQAVLVASDCNPRWLTKHLPSL 133

Query: 122 AMSRKVPLILVKD-KEGSLRLGELVNLKTAIAIGIKANGSPVNQLIDEILQ 167
           A SR VPLI V+D K+GSLRLGELV LKTAIAIGIK  GS +N+++ EI+Q
Sbjct: 134 ASSRSVPLIFVRDNKQGSLRLGELVQLKTAIAIGIKVKGSTINKIVQEIIQ 180

[Close]

BLAST of ClCG01G007180 vs. TrEMBL
Match: A0A061DZK2_THECC (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative OS=Theobroma cacao GN=TCM_004947 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 8.2e-44
Identity = 103/164 (62.80%), Postives = 123/164 (75.00%), Query Frame = 1


Query: 3   KKAKSSAPVALVQSKPNEDSYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAI 62
           K AK+    +L Q     D YEGERL  +L+SIQR +++AR L   S PEKIWLK+QFAI
Sbjct: 6   KAAKNIVDGSLPQQP---DCYEGERLVRVLKSIQRGVESARELAGNSFPEKIWLKQQFAI 65

Query: 63  GVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQAILLTANCNPRWLTNHVPSLAMSRKV 122
           GVN+VTRVLERM P  D       + +A  VRLQAILL A+CNPRWLT H+P+LA SRKV
Sbjct: 66  GVNDVTRVLERMAPIADK----GSSAQAPCVRLQAILLAADCNPRWLTKHLPTLASSRKV 125

Query: 123 PLILVKD-KEGSLRLGELVNLKTAIAIGIKANGSPVNQLIDEIL 166
           PLI VKD K+GSLRLGELV LKTAIAIG+KA G+ +NQ+I+EIL
Sbjct: 126 PLIFVKDNKKGSLRLGELVKLKTAIAIGVKARGNAINQIIEEIL 162

[Close]

BLAST of ClCG01G007180 vs. TrEMBL
Match: A0A0D2SBS2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G117100 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.5e-42
Identity = 95/147 (64.63%), Postives = 116/147 (78.91%), Query Frame = 1


Query: 20  EDSYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGD 79
           +D YEGERL  +L+SI+R I++AR L   SLPEK+WLK+QFAIGVN+VTRVLERM    D
Sbjct: 21  QDCYEGERLIHVLKSIRRGIESARALAGNSLPEKVWLKQQFAIGVNDVTRVLERMAAIID 80

Query: 80  SARIMNPNFKACTVRLQAILLTANCNPRWLTNHVPSLAMSRKVPLILVK-DKEGSLRLGE 139
                   F    VRLQAILL A+CNP+WLT H+P+LA SRKVPLI+VK DK+GSLRLGE
Sbjct: 81  EGSTAQSPF----VRLQAILLAADCNPKWLTKHLPTLAKSRKVPLIIVKDDKKGSLRLGE 140

Query: 140 LVNLKTAIAIGIKANGSPVNQLIDEIL 166
           LV LKTA+AIG+KA GS +NQ+++EIL
Sbjct: 141 LVKLKTAVAIGVKARGSAINQIMEEIL 163

[Close]

BLAST of ClCG01G007180 vs. TrEMBL
Match: V4TWE3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022352mg PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.9e-41
Identity = 100/176 (56.82%), Postives = 122/176 (69.32%), Query Frame = 1


Query: 2   GKKAKSSAPVALVQSKPNE-----DSYEGERLDELLQSIQREIKTARFLNAESLPEKIWL 61
           G K  S   V  V   PN      + YEGE L  LL+ IQREI +AR L+ +SLPEK+W 
Sbjct: 3   GGKRASRKLVHDVSKPPNSVPQESECYEGESLVRLLKLIQREIVSARSLHGDSLPEKLWF 62

Query: 62  KKQFAIGVNEVTRVLERMTPSGD------SARIMNPNFKACTVRLQAILLTANCNPRWLT 121
           K+QF+IGVNEVTRVLERM P  +         I+  N K  +V+LQ ILL A+CNPRWL 
Sbjct: 63  KQQFSIGVNEVTRVLERMAPRANMGIFPQQPHILCGNSKVPSVQLQVILLAADCNPRWLI 122

Query: 122 NHVPSLAMSRKVPLILVKDKE-GSLRLGELVNLKTAIAIGIKANGSPVNQLIDEIL 166
            H+P LA+SR VP+I VKDK+ GSLRLGELV LKTAIA+GIKA G+ +NQL+D+IL
Sbjct: 123 KHLPGLALSRNVPVIFVKDKKGGSLRLGELVKLKTAIAVGIKAKGNIINQLMDKIL 178

[Close]

BLAST of ClCG01G007180 vs. TAIR10
Match: AT4G01790.1 (AT4G01790.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 164.9 bits (416), Expect = 4.4e-41
Identity = 87/148 (58.78%), Postives = 105/148 (70.95%), Query Frame = 1


Query: 21  DSYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQFAIGVNEVTRVLERMTPSGDS 80
           D YEGERL  LL  IQR I+T++  N  SLPEKIWLKKQ AIG+NEVTRVLERM P+  S
Sbjct: 24  DYYEGERLTHLLDLIQRGIETSKLSNVNSLPEKIWLKKQIAIGINEVTRVLERMNPNNTS 83

Query: 81  ARIMNPNFKACTVRLQAILLTANCNPRWLTNHVPSLAMSRKVPLILVKD-KEGSLRLGEL 140
            +  NP       +LQ ++L A+C PR LT H+P+LA SR VP++ V+D K  SLRLGEL
Sbjct: 84  DQQQNPK------QLQVVILVADCKPRMLTKHIPNLAASRNVPVLYVRDNKRASLRLGEL 143

Query: 141 VNLKTAIAIGIKANGSPVNQLIDEILQR 168
           V LKTA+AIGIKA G+ +N L+ +IL R
Sbjct: 144 VKLKTALAIGIKARGNDLNLLLKQILPR 165

[Close]

BLAST of ClCG01G007180 vs. NCBI nr
Match: gi|659072583|ref|XP_008466288.1| (PREDICTED: ribonuclease P protein subunit p38 isoform X5 [Cucumis melo])

HSP 1 Score: 293.9 bits (751), Expect = 1.8e-76
Identity = 152/169 (89.94%), Postives = 157/169 (92.90%), Query Frame = 1


Query: 1   MGKKAKSSA-PVALVQSKPNEDSYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQ 60
           MGK  KSSA PVA +QSKP EDSYEGERLDELL SIQREIKTAR LNAESLPEK WLKKQ
Sbjct: 1   MGKNPKSSAHPVATLQSKPYEDSYEGERLDELLLSIQREIKTARGLNAESLPEKFWLKKQ 60

Query: 61  FAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQAILLTANCNPRWLTNHVPSLAMS 120
           FAIGVNEVTR LERMTP GDSAR+MNPN+KAC V+LQAILLTANCNPRWLTNHVP LAMS
Sbjct: 61  FAIGVNEVTRALERMTPCGDSARLMNPNYKACKVKLQAILLTANCNPRWLTNHVPCLAMS 120

Query: 121 RKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIDEILQRT 169
           RKVPLILVKDKEGSLRLGELVNLKTAIAIGIK+NGSPVNQLIDEILQRT
Sbjct: 121 RKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSPVNQLIDEILQRT 169

[Close]

BLAST of ClCG01G007180 vs. NCBI nr
Match: gi|778698540|ref|XP_011654557.1| (PREDICTED: uncharacterized protein LOC101221016 [Cucumis sativus])

HSP 1 Score: 291.6 bits (745), Expect = 8.9e-76
Identity = 151/171 (88.30%), Postives = 160/171 (93.57%), Query Frame = 1


Query: 1   MGKKAKSSA-PVALVQSKPNED-SYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKK 60
           MGK  KSS+ PVA +QSKPN+D SYEGERLDELL SIQREIKT R LNAESLPEK WLKK
Sbjct: 1   MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKK 60

Query: 61  QFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQAILLTANCNPRWLTNHVPSLAM 120
           QFAIGVNEVTRVLERMTP GDSAR+MNPN+K CTV+LQAILLTANCNPRWLTNHVP+LAM
Sbjct: 61  QFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAILLTANCNPRWLTNHVPTLAM 120

Query: 121 SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIDEILQRTT 170
           SRKVPLILVKDKEGSLRLGELV+LKTAIAIGIKANGSP+NQLIDEILQRTT
Sbjct: 121 SRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRTT 171

[Close]

BLAST of ClCG01G007180 vs. NCBI nr
Match: gi|659072581|ref|XP_008466280.1| (PREDICTED: ribonuclease P protein subunit p38 isoform X4 [Cucumis melo])

HSP 1 Score: 289.3 bits (739), Expect = 4.4e-75
Identity = 152/170 (89.41%), Postives = 157/170 (92.35%), Query Frame = 1


Query: 1   MGKKAKSSA-PVALVQSKPNEDS-YEGERLDELLQSIQREIKTARFLNAESLPEKIWLKK 60
           MGK  KSSA PVA +QSKP EDS YEGERLDELL SIQREIKTAR LNAESLPEK WLKK
Sbjct: 1   MGKNPKSSAHPVATLQSKPYEDSSYEGERLDELLLSIQREIKTARGLNAESLPEKFWLKK 60

Query: 61  QFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQAILLTANCNPRWLTNHVPSLAM 120
           QFAIGVNEVTR LERMTP GDSAR+MNPN+KAC V+LQAILLTANCNPRWLTNHVP LAM
Sbjct: 61  QFAIGVNEVTRALERMTPCGDSARLMNPNYKACKVKLQAILLTANCNPRWLTNHVPCLAM 120

Query: 121 SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIDEILQRT 169
           SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK+NGSPVNQLIDEILQRT
Sbjct: 121 SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSPVNQLIDEILQRT 170

[Close]

BLAST of ClCG01G007180 vs. NCBI nr
Match: gi|659072577|ref|XP_008466263.1| (PREDICTED: uncharacterized protein LOC103503720 isoform X2 [Cucumis melo])

HSP 1 Score: 283.1 bits (723), Expect = 3.2e-73
Identity = 152/186 (81.72%), Postives = 157/186 (84.41%), Query Frame = 1


Query: 1   MGKKAKSSA-PVALVQSKPNEDSYEGERLDELLQSIQREIKTARFLNAESLPEKIWLKKQ 60
           MGK  KSSA PVA +QSKP EDSYEGERLDELL SIQREIKTAR LNAESLPEK WLKKQ
Sbjct: 1   MGKNPKSSAHPVATLQSKPYEDSYEGERLDELLLSIQREIKTARGLNAESLPEKFWLKKQ 60

Query: 61  FAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQ-----------------AILLTA 120
           FAIGVNEVTR LERMTP GDSAR+MNPN+KAC V+LQ                 AILLTA
Sbjct: 61  FAIGVNEVTRALERMTPCGDSARLMNPNYKACKVKLQVVYSVIYVGQCYLGFRLAILLTA 120

Query: 121 NCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLID 169
           NCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK+NGSPVNQLID
Sbjct: 121 NCNPRWLTNHVPCLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSPVNQLID 180

[Close]

BLAST of ClCG01G007180 vs. NCBI nr
Match: gi|659072575|ref|XP_008466254.1| (PREDICTED: uncharacterized protein LOC103503720 isoform X1 [Cucumis melo])

HSP 1 Score: 278.5 bits (711), Expect = 7.8e-72
Identity = 152/187 (81.28%), Postives = 157/187 (83.96%), Query Frame = 1


Query: 1   MGKKAKSSA-PVALVQSKPNEDS-YEGERLDELLQSIQREIKTARFLNAESLPEKIWLKK 60
           MGK  KSSA PVA +QSKP EDS YEGERLDELL SIQREIKTAR LNAESLPEK WLKK
Sbjct: 1   MGKNPKSSAHPVATLQSKPYEDSSYEGERLDELLLSIQREIKTARGLNAESLPEKFWLKK 60

Query: 61  QFAIGVNEVTRVLERMTPSGDSARIMNPNFKACTVRLQ-----------------AILLT 120
           QFAIGVNEVTR LERMTP GDSAR+MNPN+KAC V+LQ                 AILLT
Sbjct: 61  QFAIGVNEVTRALERMTPCGDSARLMNPNYKACKVKLQVVYSVIYVGQCYLGFRLAILLT 120

Query: 121 ANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLI 169
           ANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK+NGSPVNQLI
Sbjct: 121 ANCNPRWLTNHVPCLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSPVNQLI 180

The following BLAST results are available for this feature:

BLAST of ClCG01G007180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A059DEG5_EUCGR	3.3e-45	59.78	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01003 PE=4 SV=1	[more]
A0A151SSA2_CAJCA	6.3e-44	57.31	Uncharacterized protein OS=Cajanus cajan GN=KK1_003896 PE=4 SV=1	[more]
A0A061DZK2_THECC	8.2e-44	62.80	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative OS=Theobroma ca...	[more]
A0A0D2SBS2_GOSRA	1.5e-42	64.63	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G117100 PE=4 SV=1	[more]
V4TWE3_9ROSI	2.9e-41	56.82	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022352mg PE=4 SV=1	[more]

BLAST of ClCG01G007180 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G01790.1	4.4e-41	58.78	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

BLAST of ClCG01G007180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072583\|ref\|XP_008466288.1\|	1.8e-76	89.94	PREDICTED: ribonuclease P protein subunit p38 isoform X5 [Cucumis melo]	[more]
gi\|778698540\|ref\|XP_011654557.1\|	8.9e-76	88.30	PREDICTED: uncharacterized protein LOC101221016 [Cucumis sativus]	[more]
gi\|659072581\|ref\|XP_008466280.1\|	4.4e-75	89.41	PREDICTED: ribonuclease P protein subunit p38 isoform X4 [Cucumis melo]	[more]
gi\|659072577\|ref\|XP_008466263.1\|	3.2e-73	81.72	PREDICTED: uncharacterized protein LOC103503720 isoform X2 [Cucumis melo]	[more]
gi\|659072575\|ref\|XP_008466254.1\|	7.8e-72	81.28	PREDICTED: uncharacterized protein LOC103503720 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004038	Ribosomal_L7Ae/L30e/S12e/Gad45

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0008033	tRNA processing
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005655	nucleolar ribonuclease P complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004526	ribonuclease P activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G007180.1	ClCG01G007180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 95..155 score: 1.
None	No IPR available	unknown	Coil	Coil	coord: 28..48 scor
None	No IPR available	PANTHER	PTHR21596	RIBONUCLEASE P SUBUNIT P38	coord: 26..73 score: 6.6E-25coord: 93..166 score: 6.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G007180	Csa5G126730	Cucumber (Chinese Long) v2	cuwcgB365
ClCG01G007180	MELO3C005192	Melon (DHL92) v3.5.1	mewcgB019
ClCG01G007180	Cla005860	Watermelon (97103) v1	wcgwmB143
ClCG01G007180	Cla97C01G007590	Watermelon (97103) v2	wcgwmbB089
ClCG01G007180	Bhi12G000908	Wax gourd	wcgwgoB191
ClCG01G007180	CSPI05G02430	Wild cucumber (PI 183967)	cpiwcgB380
ClCG01G007180	Cucsa.374210	Cucumber (Gy14) v1	cgywcgB638
ClCG01G007180	CmaCh15G008570	Cucurbita maxima (Rimu)	cmawcgB260
ClCG01G007180	CmoCh15G008890	Cucurbita moschata (Rifu)	cmowcgB248
ClCG01G007180	Lsi09G007630	Bottle gourd (USVL1VR-Ls)	lsiwcgB008
ClCG01G007180	Cp4.1LG13g06130	Cucurbita pepo (Zucchini)	cpewcgB166
ClCG01G007180	CsGy5G012500	Cucumber (Gy14) v2	cgybwcgB333
ClCG01G007180	MELO3C005192.2	Melon (DHL92) v3.6.1	medwcgB018
ClCG01G007180	Carg01350	Silver-seed gourd	carwcgB0800
ClCG01G007180	CsaV3_5G018620	Cucumber (Chinese Long) v3	cucwcgB386

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G007180	Silver-seed gourd	carwcgB0462
ClCG01G007180	Cucurbita maxima (Rimu)	cmawcgB634
ClCG01G007180	Cucurbita moschata (Rifu)	cmowcgB636
ClCG01G007180	Cucurbita pepo (Zucchini)	cpewcgB370