CSPI05G02430 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G02430
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative
Location	Chr5 : 3096189 .. 3096500 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTATACTGTTAACAGCCAATTGCAACCCCCGATGGCTTACAAACCATGTGCCAACCTTGGCCATGTCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAAGGATCATTAAGGTTAGGTGAACTCGTTAGCCTTAAAACAGCAATTGCAATTGGAATAAAGGTGAGTAGGAAGTATTAGATTTTTTATGTGATGTGTTCTGTTCTAACTTTTTCCTTTTTCTAACAAAGCTGCATGTTTCCAAACGAACTGCAGGCGAATGGGAGCCCTATTAATCAACTCATTGATGAAATCCTTCAAAGAACAACA

mRNA sequence

GCTATACTGTTAACAGCCAATTGCAACCCCCGATGGCTTACAAACCATGTGCCAACCTTGGCCATGTCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAAGGATCATTAAGGTTAGGTGAACTCGTTAGCCTTAAAACAGCAATTGCAATTGGAATAAAGGCGAATGGGAGCCCTATTAATCAACTCATTGATGAAATCCTTCAAAGAACAACA

Coding sequence (CDS)

GCTATACTGTTAACAGCCAATTGCAACCCCCGATGGCTTACAAACCATGTGCCAACCTTGGCCATGTCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAAGGATCATTAAGGTTAGGTGAACTCGTTAGCCTTAAAACAGCAATTGCAATTGGAATAAAGGCGAATGGGAGCCCTATTAATCAACTCATTGATGAAATCCTTCAAAGAACAACA

Homology

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BLAST of CSPI05G02430 vs. TrEMBL
Match: A0A0A0KLN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G126730 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.1e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP 60
          AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP
Sbjct: 11 AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP 70

Query: 61 INQLIDEILQRTT 74
          INQLIDEILQRTT
Sbjct: 71 INQLIDEILQRTT 83

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BLAST of CSPI05G02430 vs. TrEMBL
Match: A0A061DZK2_THECC (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative OS=Theobroma cacao GN=TCM_004947 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.2e-21
Identity = 55/70 (78.57%), Postives = 62/70 (88.57%), Query Frame = 1


Query: 1   AILLTANCNPRWLTNHVPTLAMSRKVPLILVKD-KEGSLRLGELVSLKTAIAIGIKANGS 60
           AILL A+CNPRWLT H+PTLA SRKVPLI VKD K+GSLRLGELV LKTAIAIG+KA G+
Sbjct: 93  AILLAADCNPRWLTKHLPTLASSRKVPLIFVKDNKKGSLRLGELVKLKTAIAIGVKARGN 152

Query: 61  PINQLIDEIL 70
            INQ+I+EIL
Sbjct: 153 AINQIIEEIL 162

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BLAST of CSPI05G02430 vs. TrEMBL
Match: A0A0D2SBS2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G117100 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.5e-21
Identity = 53/70 (75.71%), Postives = 63/70 (90.00%), Query Frame = 1


Query: 1   AILLTANCNPRWLTNHVPTLAMSRKVPLILVK-DKEGSLRLGELVSLKTAIAIGIKANGS 60
           AILL A+CNP+WLT H+PTLA SRKVPLI+VK DK+GSLRLGELV LKTA+AIG+KA GS
Sbjct: 94  AILLAADCNPKWLTKHLPTLAKSRKVPLIIVKDDKKGSLRLGELVKLKTAVAIGVKARGS 153

Query: 61  PINQLIDEIL 70
            INQ+++EIL
Sbjct: 154 AINQIMEEIL 163

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BLAST of CSPI05G02430 vs. TrEMBL
Match: A0A059DEG5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01003 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-19
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 1


Query: 1   AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKE-GSLRLGELVSLKTAIAIGIKANGS 60
           AILL ++CNPRWLT H+P+LA+SRKVPLI VKDK+ GSLRLGELV+LKTAIAIGIKA G+
Sbjct: 110 AILLASDCNPRWLTRHLPSLALSRKVPLIFVKDKKRGSLRLGELVNLKTAIAIGIKAKGN 169

Query: 61  PINQLIDEIL 70
            +N +I +IL
Sbjct: 170 AVNHIIQKIL 179

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BLAST of CSPI05G02430 vs. TrEMBL
Match: M5XUD4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011899mg PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-19
Identity = 49/74 (66.22%), Postives = 64/74 (86.49%), Query Frame = 1


Query: 1   AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEG-SLRLGELVSLKTAIAIGIKANGS 60
           A+L+ ++CNPRWL+ H+P+LA+SRKVPLI +KD +G SLRLG+LV LKTAIAIG+KA G+
Sbjct: 95  AVLIASDCNPRWLSKHLPSLALSRKVPLIFLKDNKGASLRLGQLVQLKTAIAIGVKAKGN 154

Query: 61  PINQLIDEILQRTT 74
            INQLI+EIL+  T
Sbjct: 155 AINQLIEEILRGNT 168

[Close]

BLAST of CSPI05G02430 vs. TAIR10
Match: AT4G01790.1 (AT4G01790.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-17
Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 1


Query: 2   ILLTANCNPRWLTNHVPTLAMSRKVPLILVKD-KEGSLRLGELVSLKTAIAIGIKANGSP 61
           ++L A+C PR LT H+P LA SR VP++ V+D K  SLRLGELV LKTA+AIGIKA G+ 
Sbjct: 95  VILVADCKPRMLTKHIPNLAASRNVPVLYVRDNKRASLRLGELVKLKTALAIGIKARGND 154

Query: 62  INQLIDEILQR 72
           +N L+ +IL R
Sbjct: 155 LNLLLKQILPR 165

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BLAST of CSPI05G02430 vs. NCBI nr
Match: gi|778698540|ref|XP_011654557.1| (PREDICTED: uncharacterized protein LOC101221016 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 5.8e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1   AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP 60
           AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP
Sbjct: 99  AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP 158

Query: 61  INQLIDEILQRTT 74
           INQLIDEILQRTT
Sbjct: 159 INQLIDEILQRTT 171

[Close]

BLAST of CSPI05G02430 vs. NCBI nr
Match: gi|700194607|gb|KGN49784.1| (hypothetical protein Csa_5G126730 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 5.8e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP 60
          AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP
Sbjct: 11 AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP 70

Query: 61 INQLIDEILQRTT 74
          INQLIDEILQRTT
Sbjct: 71 INQLIDEILQRTT 83

[Close]

BLAST of CSPI05G02430 vs. NCBI nr
Match: gi|659072577|ref|XP_008466263.1| (PREDICTED: uncharacterized protein LOC103503720 isoform X2 [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 7.1e-30
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 1


Query: 1   AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP 60
           AILLTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP
Sbjct: 115 AILLTANCNPRWLTNHVPCLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSP 174

Query: 61  INQLIDEILQRT 73
           +NQLIDEILQRT
Sbjct: 175 VNQLIDEILQRT 186

[Close]

BLAST of CSPI05G02430 vs. NCBI nr
Match: gi|659072579|ref|XP_008466271.1| (PREDICTED: uncharacterized protein LOC103503720 isoform X3 [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 7.1e-30
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 1


Query: 1   AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP 60
           AILLTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP
Sbjct: 114 AILLTANCNPRWLTNHVPCLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSP 173

Query: 61  INQLIDEILQRT 73
           +NQLIDEILQRT
Sbjct: 174 VNQLIDEILQRT 185

[Close]

BLAST of CSPI05G02430 vs. NCBI nr
Match: gi|659072581|ref|XP_008466280.1| (PREDICTED: ribonuclease P protein subunit p38 isoform X4 [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 7.1e-30
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 1


Query: 1   AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP 60
           AILLTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP
Sbjct: 99  AILLTANCNPRWLTNHVPCLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSP 158

Query: 61  INQLIDEILQRT 73
           +NQLIDEILQRT
Sbjct: 159 VNQLIDEILQRT 170

The following BLAST results are available for this feature:

BLAST of CSPI05G02430 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G02430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLN6_CUCSA	4.1e-32	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G126730 PE=4 SV=1	[more]
A0A061DZK2_THECC	3.2e-21	78.57	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative OS=Theobroma ca...	[more]
A0A0D2SBS2_GOSRA	5.5e-21	75.71	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G117100 PE=4 SV=1	[more]
A0A059DEG5_EUCGR	1.4e-19	72.86	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01003 PE=4 SV=1	[more]
M5XUD4_PRUPE	1.8e-19	66.22	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011899mg PE=4 SV=1	[more]

BLAST of CSPI05G02430 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G01790.1	1.5e-17	59.15	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

BLAST of CSPI05G02430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778698540\|ref\|XP_011654557.1\|	5.8e-32	100.00	PREDICTED: uncharacterized protein LOC101221016 [Cucumis sativus]	[more]
gi\|700194607\|gb\|KGN49784.1\|	5.8e-32	100.00	hypothetical protein Csa_5G126730 [Cucumis sativus]	[more]
gi\|659072577\|ref\|XP_008466263.1\|	7.1e-30	94.44	PREDICTED: uncharacterized protein LOC103503720 isoform X2 [Cucumis melo]	[more]
gi\|659072579\|ref\|XP_008466271.1\|	7.1e-30	94.44	PREDICTED: uncharacterized protein LOC103503720 isoform X3 [Cucumis melo]	[more]
gi\|659072581\|ref\|XP_008466280.1\|	7.1e-30	94.44	PREDICTED: ribonuclease P protein subunit p38 isoform X4 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004038	Ribosomal_L7Ae/L30e/S12e/Gad45

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G02430.1	CSPI05G02430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 2..59 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G02430	Cla005860	Watermelon (97103) v1	cpiwmB417
CSPI05G02430	Csa5G126730	Cucumber (Chinese Long) v2	cpicuB240
CSPI05G02430	MELO3C005192	Melon (DHL92) v3.5.1	cpimeB352
CSPI05G02430	ClCG01G007180	Watermelon (Charleston Gray)	cpiwcgB380
CSPI05G02430	MELO3C005192.2	Melon (DHL92) v3.6.1	cpimedB342
CSPI05G02430	CsaV3_5G018620	Cucumber (Chinese Long) v3	cpicucB287
CSPI05G02430	Cla97C01G007590	Watermelon (97103) v2	cpiwmbB350
CSPI05G02430	Bhi12G000908	Wax gourd	cpiwgoB441
CSPI05G02430	Cucsa.374210	Cucumber (Gy14) v1	cgycpiB552
CSPI05G02430	CmaCh15G008570	Cucurbita maxima (Rimu)	cmacpiB307
CSPI05G02430	CmoCh15G008890	Cucurbita moschata (Rifu)	cmocpiB299
CSPI05G02430	Cp4.1LG13g06130	Cucurbita pepo (Zucchini)	cpecpiB180
CSPI05G02430	CsGy5G012500	Cucumber (Gy14) v2	cgybcpiB227
CSPI05G02430	Carg01350	Silver-seed gourd	carcpiB0862

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G02430	Cucurbita pepo (Zucchini)	cpecpiB418
CSPI05G02430	Bottle gourd (USVL1VR-Ls)	cpilsiB323
CSPI05G02430	Silver-seed gourd	carcpiB0516
CSPI05G02430	Cucurbita maxima (Rimu)	cmacpiB734
CSPI05G02430	Cucurbita moschata (Rifu)	cmocpiB727