CmaCh15G008570 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh15G008570
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative
Location	Cma_Chr15 : 4318266 .. 4322055 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATAAGCCTTGAGTGGGCCGTGGAGGAAGCAGTAGTTCGTCCAGTTCCAGTACGGCGTTAGTCCAATCGAAGAACGTCGCTCCTATTTCTCTCCAGACTCGAAAGCTACACTTTCGAGCAAGTTTTCAGCCATGGGAAAGAAGGCTAAATCTTCTGGTCCTGTTGCAGTCGTTCAATCTAAGCGTAACGAAGAGTAAGCCTGCTTTTCTTTCTCACTTTCATGCTTTTCGGACCTTTTCCCGCTCTTCTCCATTCCATCTCTTATCTTAATGTTTTTGTTAATTTACGATGGATTTTGTTTTCGGAATTTGACTGTCCCAGTTCCTACGAAGGGGAACGTCTCGATGAGTTGCTGCAGTCGATTCAGAGGTAGACAATAGTTAATTTGTCTAATAATGCGCTTCAAGCCACCAATAGCTGATCATTGTACTTAACAGGGAGATAAAGAGAGCAAGATTTCTGAATGCGGATTCCTTGCCGGAAAAAATTTGGCTCAAGGTTTCCACTAATTTTTCTGTTTCAATGATGTTTCTCCGTATTTTTAACGTCTTTAGTTTCTCCTTGCCGTGCCATATCGGTATCGATGTTTGTTATTAGTTAGAGAAACAAAAATTGAATTCATGACTCCTTTTATAAGCCGCTGATGTTGAGTGATGGGCTTCTTTTTAGAAACAATTTGCAATTGGAGTTAATGAGGTTACTAGAGTCCTTGAACGGATGACGCCAAGTGAAGATTCTGCTCGTATGAACCCTAATTATAAGGCGTGTACAGTCAGGCTTCAGGTTTGAATACTCTTATCTAGGGTTCAGGAATTTGCCGGATGCTTATTAATAGAATCCCAGCTTTTCCCTTCTACGGTAGTGTTGTTGCTCTTCACTTTATTATTTTTGGTGGATTGATGGACCCTTTAATTAGCTCGAAGTCATAAGTGTTACTTTCTTGGTTTTGTTTCAGTTTTGTGTCAATTTCATGCGTGACAACCAATTTAAAACTTGGCCTGCATTTGGCGCTTCCATGAGCTCTAGTTATGATAAGCGGATTTATGTAGCTATCCGTTAGATTTCATCCTTTTAAATTGGGGTCCATGTCTATAGTTTGATGGGCTCTGTTAATTTTACTGTTTTTTGTATGTTCTTGTAAGTTCTTTCAATCTTTTCCCCTATTAATGAAAGCTGGGTTTCTTATAGAAAAATTAAAAATAAGTGACCTCGATACTTCAAATACTAGGTTAAAGAGAAGGTCAAGGTAACCATTTCATGTGTGTGAGCGCGAGCACACGTCTTTCATGGGAAGAGAATCAATTTAAAACATGAGCCACATTTGCTGTTTCCATGAGCTCTAGTTGTGATAAGCAAAATTTCTGTAATTATCGTTAGGTTTTATCCTTTAAAATTGGGGTTCTTTTTTTGTTGTTTGATGGACTCCATTTATTGGTTGTTCTTTTGTATGCCCTTTGTTCATTCTTTTAATTTTTTGTTTAATCAATGAATTAGCTGACCTAGATACTGTAAATACTAGGTTAAAGACCCTCTTGCACCAAATGTCCTGTTTACTTAATAGGCAATGATAATCGCACAACAGAAGATCTCAAATGCCGTAGACATGAACTTCTTAGGAGGCTAGTCGTGCAGTGAAAAACCATGTATGTTTAGAAAAATGTTTTGGAGGTTAAAAGATGTTAAACTGGTAGAACCAAGAAGCGAAGATGAAGTCCATGGATGAACACTCCCATAAGTCTTTTTGGATTAGGCAATGGTGTATACAGTTCATGCCTGCCACTTGAGAACTAGATATCTCATAGAGTTAGTAACTTCCAGCCTAGGTTGTGGCCTTAAGAAATGTAATTATCTTGTCCAAAGTGTCCAATTCATCCATTCGAGTGTACTTGAGGACAGTAATTTCTTTTGAGAGAAAAAGTTCCACTGTGGAAAGTTCTTGTTGATTCTCATGTTGAAGGCAATTATCCTAAAACTTCCTAAAGCCCTCATAGTCTTGATACAAATTTTCATTGGTGCCAAATGATATCAACAAATCCATTAGTGTAGTTAACATGGTTACATGCCTTCTTCTTGGGAGTACGCCACTTGATTGGTATAGCCATTGAAATGTGCTTGGCCACAGTCCAAAACTTCTACAAGAATGATCACTTGTCCATGCATCCTACAGAATGTTGTTTGTGAAGCATTCCATCTCAATGTTTGGTGCAAGTATGAAGTAAATTTGTGGGGACTACGTAGTATTCCTTATGTAGCAAGAATTGAAACGAGACTTTGAACTCCTATTGGTAAGTGGACTTTTCCTCCGTGGTAAGCTTAGTTTCTCACTAAAATATTTCATAGACTTGCCATTTTTAGATAGGACTGCTCCCATACCTTTAGCAGAAGCATCCATCTGGACTTCAAAGAGGAGGCCGCATTTTGGCCAGGCCAAGATGGCTGCAACTATCTGCTTTCCTTCAGTGTTTGGAGGACTATTTCTATAGTCCCAGGATAGCTAGTATGGGTCCACTCATACAAAATTGGTTCCCATTACGAATCCTAAGAACAACAGTTTTGTAAGAAGCATTTACTTAGAGATATTAAAGTAAAGCTCGGTGGAATTTAGAGCAGTTTGTCGTCTAAGTAGACAATAAGGGATTTACCTCATATGTATGGTCATAATACATGTACCATCAGGCACATCAAAGTACTTGGAGCTTTGATCGAGCCAAAAGCCACACGCACAACTTACCTTATTTGCAGTCTTGAAGGCTATTTTTCATTATCTCTTGGTTTACTGCAAATTTGATGTTAGTGACTTTTAATGTCTCGTTTAGCGAAGAGGATTGCAGTGCACCACGTAATTGGTCTACGAGTTTTGAAAGTGGTTTTGTACAGGGAGTTGATATTTTATGGCAAATTTATCTCTATTTTTGTTATGGATTCTATACTTCCTAGTTCAGAAATGAATGTCATTTTGAATTCCCTAGGACATGCATCTGCTTGATATATAAACTCATGTTTTTAAACTCAACTCATCAAGCTTTGCCTACTGTCTTTTCTATATACGGTGTCTAATTATTCGGCGTTTCGCCTTTTATTATGTAGGCTATACTTTTAACTGCTGATTGCAACCCTCGATGGCTGACAAACCATGTGCCAAGCTTGGCCATATCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAGGGTTCTTTAAGGTTAGGTGAACTCGTTAACCTTAAAACAGCAATTGCAATTGGAATAAAGGTGAGGAGGAAATATTAGATAATGAATAGCCTGTTCAACTTTTTTTCTAAAAACGCTATTATTAACAAAGTTTCATGTTTCCAAACGAATTGCAGGATAATGGGAGCCCTGTTAATCAACTTATTGGTGAAATTCTTTCAAGAACAACATAAAAACAGGTGGCAGAATACAACAAAGTTGTCTAGTGTACAGTAAAAATGGTATGAAATAGAGGCAGTCTGAGATTTGTAGTTCGTGCTGATTCACTCTTGATAATGACCGCCACTATGGCTTTTAGTATCCTTATAAAGAATATTTGCAGAAGCCTGAGATGGTAGGATAGCAATTGTTATGTAATACATTGTGGGATTCCAAATTGCGTGCGGAGTTTAAATTTCGTGTTGTTATTGTGGCTGATAGAGTTCAAATAGTCCATAACATCTTGTCTTCTCCATTCTATTGGAAGTAGTAAAATGAAAAAAAGATTACTTCTGTTTGAAATGCCTTTAATTTTTTAGGTAAGCCGTCTTTTTAGAGAAATTTTCAATGTATATTCC

mRNA sequence

CAAATAAGCCTTGAGTGGGCCGTGGAGGAAGCAGTAGTTCGTCCAGTTCCAGTACGGCGTTAGTCCAATCGAAGAACGTCGCTCCTATTTCTCTCCAGACTCGAAAGCTACACTTTCGAGCAAGTTTTCAGCCATGGGAAAGAAGGCTAAATCTTCTGGTCCTGTTGCAGTCGTTCAATCTAAGCGTAACGAAGATTCCTACGAAGGGGAACGTCTCGATGAGTTGCTGCAGTCGATTCAGAGGGAGATAAAGAGAGCAAGATTTCTGAATGCGGATTCCTTGCCGGAAAAAATTTGGCTCAAGAAACAATTTGCAATTGGAGTTAATGAGGTTACTAGAGTCCTTGAACGGATGACGCCAAGTGAAGATTCTGCTCGTATGAACCCTAATTATAAGGCGTGTACAGTCAGGCTTCAGGCTATACTTTTAACTGCTGATTGCAACCCTCGATGGCTGACAAACCATGTGCCAAGCTTGGCCATATCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAGGGTTCTTTAAGGTTAGGTGAACTCGTTAACCTTAAAACAGCAATTGCAATTGGAATAAAGGATAATGGGAGCCCTGTTAATCAACTTATTGGTGAAATTCTTTCAAGAACAACATAAAAACAGGTGGCAGAATACAACAAAGTTGTCTAGTGTACAGTAAAAATGGTATGAAATAGAGGCAGTCTGAGATTTGTAGTTCGTGCTGATTCACTCTTGATAATGACCGCCACTATGGCTTTTAGTATCCTTATAAAGAATATTTGCAGAAGCCTGAGATGGTAGGATAGCAATTGTTATGTAATACATTGTGGGATTCCAAATTGCGTGCGGAGTTTAAATTTCGTGTTGTTATTGTGGCTGATAGAGTTCAAATAGTCCATAACATCTTGTCTTCTCCATTCTATTGGAAGTAGTAAAATGAAAAAAAGATTACTTCTGTTTGAAATGCCTTTAATTTTTTAGGTAAGCCGTCTTTTTAGAGAAATTTTCAATGTATATTCC

Coding sequence (CDS)

ATGGGAAAGAAGGCTAAATCTTCTGGTCCTGTTGCAGTCGTTCAATCTAAGCGTAACGAAGATTCCTACGAAGGGGAACGTCTCGATGAGTTGCTGCAGTCGATTCAGAGGGAGATAAAGAGAGCAAGATTTCTGAATGCGGATTCCTTGCCGGAAAAAATTTGGCTCAAGAAACAATTTGCAATTGGAGTTAATGAGGTTACTAGAGTCCTTGAACGGATGACGCCAAGTGAAGATTCTGCTCGTATGAACCCTAATTATAAGGCGTGTACAGTCAGGCTTCAGGCTATACTTTTAACTGCTGATTGCAACCCTCGATGGCTGACAAACCATGTGCCAAGCTTGGCCATATCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAGGGTTCTTTAAGGTTAGGTGAACTCGTTAACCTTAAAACAGCAATTGCAATTGGAATAAAGGATAATGGGAGCCCTGTTAATCAACTTATTGGTGAAATTCTTTCAAGAACAACATAA

Protein sequence

MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQFAIGVNEVTRVLERMTPSEDSARMNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSRTT

Homology

[Close]

BLAST of CmaCh15G008570 vs. TrEMBL
Match: A0A059DEG5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01003 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.8e-44
Identity = 104/165 (63.03%), Postives = 125/165 (75.76%), Query Frame = 1


Query: 8   SGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQFAIGVNEV 67
           SGP      +++  ++EGE L  LL+SIQ +IK AR L+ ++LPEKIWLK+QFAIGVNEV
Sbjct: 20  SGP-----QEQDRSTFEGESLGLLLESIQGKIKAARSLDGEALPEKIWLKQQFAIGVNEV 79

Query: 68  TRVLERMTPSEDS-------ARMNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRK 127
           TRVLERM PS D+       + M+ N  A   RLQAILL +DCNPRWLT H+PSLA+SRK
Sbjct: 80  TRVLERMPPSNDADDCPLEESLMSSNDNASYPRLQAILLASDCNPRWLTRHLPSLALSRK 139

Query: 128 VPLILVKDKE-GSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEIL 165
           VPLI VKDK+ GSLRLGELVNLKTAIAIGIK  G+ VN +I +IL
Sbjct: 140 VPLIFVKDKKRGSLRLGELVNLKTAIAIGIKAKGNAVNHIIQKIL 179

[Close]

BLAST of CmaCh15G008570 vs. TrEMBL
Match: A0A151SSA2_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_003896 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-43
Identity = 101/170 (59.41%), Postives = 125/170 (73.53%), Query Frame = 1


Query: 2   GKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQFA 61
           G K  S+  +A     +  + YEGERL  LLQSI REI+  R L+  SLPEKIW K+QF+
Sbjct: 14  GNKNNSNSSIA----SQENNCYEGERLTSLLQSIHREIQSTRLLDGSSLPEKIWFKQQFS 73

Query: 62  IGVNEVTRVLERMTPS---EDSARMNP---NYKACTVRLQAILLTADCNPRWLTNHVPSL 121
           IGVN+VTRVLERM P    E SA + P   N+KA +V+LQA+L+ +DCNPRWLT H+PSL
Sbjct: 74  IGVNDVTRVLERMNPCTELERSAELFPLRRNHKASSVKLQAVLVASDCNPRWLTKHLPSL 133

Query: 122 AISRKVPLILVKD-KEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEIL 165
           A SR VPLI V+D K+GSLRLGELV LKTAIAIGIK  GS +N+++ EI+
Sbjct: 134 ASSRSVPLIFVRDNKQGSLRLGELVQLKTAIAIGIKVKGSTINKIVQEII 179

[Close]

BLAST of CmaCh15G008570 vs. TrEMBL
Match: A0A061DZK2_THECC (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative OS=Theobroma cacao GN=TCM_004947 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.0e-43
Identity = 98/145 (67.59%), Postives = 114/145 (78.62%), Query Frame = 1


Query: 21  DSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQFAIGVNEVTRVLERMTPSEDS 80
           D YEGERL  +L+SIQR ++ AR L  +S PEKIWLK+QFAIGVN+VTRVLERM P  D 
Sbjct: 21  DCYEGERLVRVLKSIQRGVESARELAGNSFPEKIWLKQQFAIGVNDVTRVLERMAPIADK 80

Query: 81  ARMNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKD-KEGSLRLGELV 140
                + +A  VRLQAILL ADCNPRWLT H+P+LA SRKVPLI VKD K+GSLRLGELV
Sbjct: 81  ---GSSAQAPCVRLQAILLAADCNPRWLTKHLPTLASSRKVPLIFVKDNKKGSLRLGELV 140

Query: 141 NLKTAIAIGIKDNGSPVNQLIGEIL 165
            LKTAIAIG+K  G+ +NQ+I EIL
Sbjct: 141 KLKTAIAIGVKARGNAINQIIEEIL 162

[Close]

BLAST of CmaCh15G008570 vs. TrEMBL
Match: A0A0D2SBS2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G117100 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.3e-41
Identity = 96/150 (64.00%), Postives = 117/150 (78.00%), Query Frame = 1


Query: 18  RNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQFAIGVNEVTRVLERMTP- 77
           + +D YEGERL  +L+SI+R I+ AR L  +SLPEK+WLK+QFAIGVN+VTRVLERM   
Sbjct: 19  QQQDCYEGERLIHVLKSIRRGIESARALAGNSLPEKVWLKQQFAIGVNDVTRVLERMAAI 78

Query: 78  -SEDSARMNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRKVPLILVK-DKEGSLR 137
             E S   +P      VRLQAILL ADCNP+WLT H+P+LA SRKVPLI+VK DK+GSLR
Sbjct: 79  IDEGSTAQSP-----FVRLQAILLAADCNPKWLTKHLPTLAKSRKVPLIIVKDDKKGSLR 138

Query: 138 LGELVNLKTAIAIGIKDNGSPVNQLIGEIL 165
           LGELV LKTA+AIG+K  GS +NQ++ EIL
Sbjct: 139 LGELVKLKTAVAIGVKARGSAINQIMEEIL 163

[Close]

BLAST of CmaCh15G008570 vs. TrEMBL
Match: B9I9A7_POPTR (Ribosomal protein L7Ae/L30e/S12e/Gadd45 OS=Populus trichocarpa GN=POPTR_0014s10780g PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.2e-41
Identity = 95/165 (57.58%), Postives = 118/165 (71.52%), Query Frame = 1


Query: 12  AVVQSKRNEDSY-EGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQFAIGVNEVTRV 71
           +V Q K +  SY EGERL  LL+SI +EI+  + L   SLPEK W K+QFAIGVNEVTRV
Sbjct: 11  SVTQEKDSSSSYYEGERLARLLKSIHKEIESTKTLEGSSLPEKFWFKQQFAIGVNEVTRV 70

Query: 72  LERMTPSEDS------ARMNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRKVPLI 131
           LERM+P  +S      +    N+K  +V LQAIL+ +DCNP+WLT H+PSLA SRKVPLI
Sbjct: 71  LERMSPVSESGSSLQRSHAINNHKVPSVHLQAILIASDCNPKWLTRHLPSLASSRKVPLI 130

Query: 132 LVKDKE-GSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSRTT 169
            VKDK  GSLRLGELV LKTAIAIG+K  G+ +N+++G +    T
Sbjct: 131 FVKDKRGGSLRLGELVKLKTAIAIGVKARGNAINEIVGILCGNET 175

[Close]

BLAST of CmaCh15G008570 vs. TAIR10
Match: AT4G01790.1 (AT4G01790.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-39
Identity = 86/151 (56.95%), Postives = 107/151 (70.86%), Query Frame = 1


Query: 18  RNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQFAIGVNEVTRVLERMTPS 77
           +  D YEGERL  LL  IQR I+ ++  N +SLPEKIWLKKQ AIG+NEVTRVLERM P+
Sbjct: 21  KESDYYEGERLTHLLDLIQRGIETSKLSNVNSLPEKIWLKKQIAIGINEVTRVLERMNPN 80

Query: 78  EDS-ARMNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKD-KEGSLRL 137
             S  + NP       +LQ ++L ADC PR LT H+P+LA SR VP++ V+D K  SLRL
Sbjct: 81  NTSDQQQNPK------QLQVVILVADCKPRMLTKHIPNLAASRNVPVLYVRDNKRASLRL 140

Query: 138 GELVNLKTAIAIGIKDNGSPVNQLIGEILSR 167
           GELV LKTA+AIGIK  G+ +N L+ +IL R
Sbjct: 141 GELVKLKTALAIGIKARGNDLNLLLKQILPR 165

[Close]

BLAST of CmaCh15G008570 vs. NCBI nr
Match: gi|659072583|ref|XP_008466288.1| (PREDICTED: ribonuclease P protein subunit p38 isoform X5 [Cucumis melo])

HSP 1 Score: 269.6 bits (688), Expect = 3.6e-69
Identity = 144/169 (85.21%), Postives = 149/169 (88.17%), Query Frame = 1


Query: 1   MGKKAKSSG-PVAVVQSKRNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQ 60
           MGK  KSS  PVA +QSK  EDSYEGERLDELL SIQREIK AR LNA+SLPEK WLKKQ
Sbjct: 1   MGKNPKSSAHPVATLQSKPYEDSYEGERLDELLLSIQREIKTARGLNAESLPEKFWLKKQ 60

Query: 61  FAIGVNEVTRVLERMTPSEDSAR-MNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAIS 120
           FAIGVNEVTR LERMTP  DSAR MNPNYKAC V+LQAILLTA+CNPRWLTNHVP LA+S
Sbjct: 61  FAIGVNEVTRALERMTPCGDSARLMNPNYKACKVKLQAILLTANCNPRWLTNHVPCLAMS 120

Query: 121 RKVPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSRT 168
           RKVPLILVKDKEGSLRLGELVNLKTAIAIGIK NGSPVNQLI EIL RT
Sbjct: 121 RKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSPVNQLIDEILQRT 169

[Close]

BLAST of CmaCh15G008570 vs. NCBI nr
Match: gi|778698540|ref|XP_011654557.1| (PREDICTED: uncharacterized protein LOC101221016 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 3.1e-68
Identity = 143/171 (83.63%), Postives = 152/171 (88.89%), Query Frame = 1


Query: 1   MGKKAKSSG-PVAVVQSKRNED-SYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKK 60
           MGK  KSS  PVA +QSK N+D SYEGERLDELL SIQREIK  R LNA+SLPEK WLKK
Sbjct: 1   MGKNPKSSSHPVAPLQSKPNQDISYEGERLDELLLSIQREIKTTRDLNAESLPEKFWLKK 60

Query: 61  QFAIGVNEVTRVLERMTPSEDSAR-MNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAI 120
           QFAIGVNEVTRVLERMTP  DSAR MNPNYK CTV+LQAILLTA+CNPRWLTNHVP+LA+
Sbjct: 61  QFAIGVNEVTRVLERMTPCGDSARLMNPNYKTCTVKLQAILLTANCNPRWLTNHVPTLAM 120

Query: 121 SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSRTT 169
           SRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK NGSP+NQLI EIL RTT
Sbjct: 121 SRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRTT 171

[Close]

BLAST of CmaCh15G008570 vs. NCBI nr
Match: gi|659072581|ref|XP_008466280.1| (PREDICTED: ribonuclease P protein subunit p38 isoform X4 [Cucumis melo])

HSP 1 Score: 265.0 bits (676), Expect = 8.9e-68
Identity = 144/170 (84.71%), Postives = 149/170 (87.65%), Query Frame = 1


Query: 1   MGKKAKSSG-PVAVVQSKRNEDS-YEGERLDELLQSIQREIKRARFLNADSLPEKIWLKK 60
           MGK  KSS  PVA +QSK  EDS YEGERLDELL SIQREIK AR LNA+SLPEK WLKK
Sbjct: 1   MGKNPKSSAHPVATLQSKPYEDSSYEGERLDELLLSIQREIKTARGLNAESLPEKFWLKK 60

Query: 61  QFAIGVNEVTRVLERMTPSEDSAR-MNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAI 120
           QFAIGVNEVTR LERMTP  DSAR MNPNYKAC V+LQAILLTA+CNPRWLTNHVP LA+
Sbjct: 61  QFAIGVNEVTRALERMTPCGDSARLMNPNYKACKVKLQAILLTANCNPRWLTNHVPCLAM 120

Query: 121 SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSRT 168
           SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK NGSPVNQLI EIL RT
Sbjct: 121 SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSPVNQLIDEILQRT 170

[Close]

BLAST of CmaCh15G008570 vs. NCBI nr
Match: gi|659072577|ref|XP_008466263.1| (PREDICTED: uncharacterized protein LOC103503720 isoform X2 [Cucumis melo])

HSP 1 Score: 258.8 bits (660), Expect = 6.4e-66
Identity = 144/186 (77.42%), Postives = 149/186 (80.11%), Query Frame = 1


Query: 1   MGKKAKSSG-PVAVVQSKRNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQ 60
           MGK  KSS  PVA +QSK  EDSYEGERLDELL SIQREIK AR LNA+SLPEK WLKKQ
Sbjct: 1   MGKNPKSSAHPVATLQSKPYEDSYEGERLDELLLSIQREIKTARGLNAESLPEKFWLKKQ 60

Query: 61  FAIGVNEVTRVLERMTPSEDSAR-MNPNYKACTVRLQ-----------------AILLTA 120
           FAIGVNEVTR LERMTP  DSAR MNPNYKAC V+LQ                 AILLTA
Sbjct: 61  FAIGVNEVTRALERMTPCGDSARLMNPNYKACKVKLQVVYSVIYVGQCYLGFRLAILLTA 120

Query: 121 DCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIG 168
           +CNPRWLTNHVP LA+SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK NGSPVNQLI 
Sbjct: 121 NCNPRWLTNHVPCLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSPVNQLID 180

[Close]

BLAST of CmaCh15G008570 vs. NCBI nr
Match: gi|659072575|ref|XP_008466254.1| (PREDICTED: uncharacterized protein LOC103503720 isoform X1 [Cucumis melo])

HSP 1 Score: 254.2 bits (648), Expect = 1.6e-64
Identity = 144/187 (77.01%), Postives = 149/187 (79.68%), Query Frame = 1


Query: 1   MGKKAKSSG-PVAVVQSKRNEDS-YEGERLDELLQSIQREIKRARFLNADSLPEKIWLKK 60
           MGK  KSS  PVA +QSK  EDS YEGERLDELL SIQREIK AR LNA+SLPEK WLKK
Sbjct: 1   MGKNPKSSAHPVATLQSKPYEDSSYEGERLDELLLSIQREIKTARGLNAESLPEKFWLKK 60

Query: 61  QFAIGVNEVTRVLERMTPSEDSAR-MNPNYKACTVRLQ-----------------AILLT 120
           QFAIGVNEVTR LERMTP  DSAR MNPNYKAC V+LQ                 AILLT
Sbjct: 61  QFAIGVNEVTRALERMTPCGDSARLMNPNYKACKVKLQVVYSVIYVGQCYLGFRLAILLT 120

Query: 121 ADCNPRWLTNHVPSLAISRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLI 168
           A+CNPRWLTNHVP LA+SRKVPLILVKDKEGSLRLGELVNLKTAIAIGIK NGSPVNQLI
Sbjct: 121 ANCNPRWLTNHVPCLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSPVNQLI 180

The following BLAST results are available for this feature:

BLAST of CmaCh15G008570 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh15G008570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A059DEG5_EUCGR	2.8e-44	63.03	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01003 PE=4 SV=1	[more]
A0A151SSA2_CAJCA	1.1e-43	59.41	Uncharacterized protein OS=Cajanus cajan GN=KK1_003896 PE=4 SV=1	[more]
A0A061DZK2_THECC	4.0e-43	67.59	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative OS=Theobroma ca...	[more]
A0A0D2SBS2_GOSRA	1.3e-41	64.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G117100 PE=4 SV=1	[more]
B9I9A7_POPTR	2.2e-41	57.58	Ribosomal protein L7Ae/L30e/S12e/Gadd45 OS=Populus trichocarpa GN=POPTR_0014s107...	[more]

BLAST of CmaCh15G008570 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G01790.1	1.4e-39	56.95	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

BLAST of CmaCh15G008570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072583\|ref\|XP_008466288.1\|	3.6e-69	85.21	PREDICTED: ribonuclease P protein subunit p38 isoform X5 [Cucumis melo]	[more]
gi\|778698540\|ref\|XP_011654557.1\|	3.1e-68	83.63	PREDICTED: uncharacterized protein LOC101221016 [Cucumis sativus]	[more]
gi\|659072581\|ref\|XP_008466280.1\|	8.9e-68	84.71	PREDICTED: ribonuclease P protein subunit p38 isoform X4 [Cucumis melo]	[more]
gi\|659072577\|ref\|XP_008466263.1\|	6.4e-66	77.42	PREDICTED: uncharacterized protein LOC103503720 isoform X2 [Cucumis melo]	[more]
gi\|659072575\|ref\|XP_008466254.1\|	1.6e-64	77.01	PREDICTED: uncharacterized protein LOC103503720 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004038	Ribosomal_L7Ae/L30e/S12e/Gad45

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G008570.1	CmaCh15G008570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 94..154 score: 4.
None	No IPR available	unknown	Coil	Coil	coord: 28..48 scor
None	No IPR available	PANTHER	PTHR21596	RIBONUCLEASE P SUBUNIT P38	coord: 92..165 score: 1.6E-24coord: 26..73 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh15G008570	Cucsa.374210	Cucumber (Gy14) v1	cgycmaB1032
CmaCh15G008570	Cla005860	Watermelon (97103) v1	cmawmB278
CmaCh15G008570	Csa5G126730	Cucumber (Chinese Long) v2	cmacuB302
CmaCh15G008570	MELO3C005192	Melon (DHL92) v3.5.1	cmameB252
CmaCh15G008570	ClCG01G007180	Watermelon (Charleston Gray)	cmawcgB260
CmaCh15G008570	CSPI05G02430	Wild cucumber (PI 183967)	cmacpiB307
CmaCh15G008570	CmoCh15G008890	Cucurbita moschata (Rifu)	cmacmoB287
CmaCh15G008570	Lsi09G007630	Bottle gourd (USVL1VR-Ls)	cmalsiB268
CmaCh15G008570	Cp4.1LG13g06130	Cucurbita pepo (Zucchini)	cmacpeB305
CmaCh15G008570	MELO3C005192.2	Melon (DHL92) v3.6.1	cmamedB286
CmaCh15G008570	CsaV3_5G018620	Cucumber (Chinese Long) v3	cmacucB0356
CmaCh15G008570	Cla97C01G007590	Watermelon (97103) v2	cmawmbB289
CmaCh15G008570	Bhi12G000908	Wax gourd	cmawgoB0376
CmaCh15G008570	CsGy5G012500	Cucumber (Gy14) v2	cgybcmaB612
CmaCh15G008570	Carg01350	Silver-seed gourd	carcmaB1148

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh15G008570	Silver-seed gourd	carcmaB0664
CmaCh15G008570	Cucurbita maxima (Rimu)	cmacmaB325
CmaCh15G008570	Cucurbita moschata (Rifu)	cmacmoB309
CmaCh15G008570	Cucurbita pepo (Zucchini)	cmacpeB318