Csa5G056070 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G056070
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 1813482 .. 1814010 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTGGTGGATGTGATTTTTACAAGCCTTTTGAATTTCTTGGGGAGATTAGGTGGCCTTTATATCAATCTAAGGGGTCAAGGTTATCTTCAAATTCATTCTCCTCGAGCGTTTTGGAATGTTGATTCATTTCGAGAAATGTTGCGTAAGTTCCCTCTATTTCATTATCCTAAAATTATTTCATGAATTGAATTGTTTTTTTCTTCCAAGAACAAATATCAACTGCCAAGATTGCAATAACACTATGAGAAAATTCAAGAAATGTGACAAAGAAAACCAATTTTAGGAACCAAAATCTAACTACTAACAAATCCTAGTTTTGATCCATTAGAACTAATTATTTGAAATTATTATTACCTTGGAAACCCTAATGTTTACAGGTGAGGTCCTTAGTGATCAACATAGGGTTCCACAGGAGAATGATGCAATCGTTTGGCATAGGACAAATTTGCAAGCTTTGTTTAATCATTTTCCTCGCGAGCGTCGAATAATAGGTACATTATTGACTCGAAACTTTATGTTGTGA

mRNA sequence

ATGCAGGTGGTGGATGTGATTTTTACAAGCCTTTTGAATTTCTTGGGGAGATTAGGTGGCCTTTATATCAATCTAAGGGGTCAAGGTTATCTTCAAATTCATTCTCCTCGAGCGTTTTGGAATGTTGATTCATTTCGAGAAATGTTGCGTGAGGTCCTTAGTGATCAACATAGGGTTCCACAGGAGAATGATGCAATCGTTTGGCATAGGACAAATTTGCAAGCTTTGTTTAATCATTTTCCTCGCGAGCGTCGAATAATAGGTACATTATTGACTCGAAACTTTATGTTGTGA

Coding sequence (CDS)

ATGCAGGTGGTGGATGTGATTTTTACAAGCCTTTTGAATTTCTTGGGGAGATTAGGTGGCCTTTATATCAATCTAAGGGGTCAAGGTTATCTTCAAATTCATTCTCCTCGAGCGTTTTGGAATGTTGATTCATTTCGAGAAATGTTGCGTGAGGTCCTTAGTGATCAACATAGGGTTCCACAGGAGAATGATGCAATCGTTTGGCATAGGACAAATTTGCAAGCTTTGTTTAATCATTTTCCTCGCGAGCGTCGAATAATAGGTACATTATTGACTCGAAACTTTATGTTGTGA

Protein sequence

MQVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIHSPRAFWNVDSFREMLREVLSDQHRVPQENDAIVWHRTNLQALFNHFPRERRIIGTLLTRNFML*

Homology

[Close]

BLAST of Csa5G056070 vs. TrEMBL
Match: A0A0A0KJD0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G056070 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 8.4e-49
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MQVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIHSPRAFWNVDSFREMLREVLSDQHRVP 60
          MQVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIHSPRAFWNVDSFREMLREVLSDQHRVP
Sbjct: 1  MQVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIHSPRAFWNVDSFREMLREVLSDQHRVP 60

Query: 61 QENDAIVWHRTNLQALFNHFPRERRIIGTLLTRNFML 98
          QENDAIVWHRTNLQALFNHFPRERRIIGTLLTRNFML
Sbjct: 61 QENDAIVWHRTNLQALFNHFPRERRIIGTLLTRNFML 97

[Close]

BLAST of Csa5G056070 vs. NCBI nr
Match: gi|700194491|gb|KGN49668.1| (hypothetical protein Csa_5G056070 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MQVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIHSPRAFWNVDSFREMLREVLSDQHRVP 60
          MQVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIHSPRAFWNVDSFREMLREVLSDQHRVP
Sbjct: 1  MQVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIHSPRAFWNVDSFREMLREVLSDQHRVP 60

Query: 61 QENDAIVWHRTNLQALFNHFPRERRIIGTLLTRNFML 98
          QENDAIVWHRTNLQALFNHFPRERRIIGTLLTRNFML
Sbjct: 61 QENDAIVWHRTNLQALFNHFPRERRIIGTLLTRNFML 97

The following BLAST results are available for this feature:

BLAST of Csa5G056070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJD0_CUCSA	8.4e-49	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G056070 PE=4 SV=1	[more]

BLAST of Csa5G056070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194491\|gb\|KGN49668.1\|	1.2e-48	100.00	hypothetical protein Csa_5G056070 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G056070.1	Csa5G056070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 97..97 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G056070	Lsi04G011760	Bottle gourd (USVL1VR-Ls)	culsiB370
Csa5G056070	CmaCh04G009880	Cucurbita maxima (Rimu)	cmacuB741
Csa5G056070	CmoCh04G010650	Cucurbita moschata (Rifu)	cmocuB731
Csa5G056070	Cp4.1LG01g07700	Cucurbita pepo (Zucchini)	cpecuB428
Csa5G056070	CsGy5G011510	Cucumber (Gy14) v2	cgybcuB225
Csa5G056070	Carg00102	Silver-seed gourd	carcuB0693

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G056070	Cucumber (Gy14) v1	cgycuB378
Csa5G056070	Cucurbita maxima (Rimu)	cmacuB743
Csa5G056070	Cucurbita maxima (Rimu)	cmacuB760
Csa5G056070	Cucurbita moschata (Rifu)	cmocuB735
Csa5G056070	Cucurbita moschata (Rifu)	cmocuB745
Csa5G056070	Melon (DHL92) v3.5.1	cumeB383
Csa5G056070	Watermelon (Charleston Gray)	cuwcgB363
Csa5G056070	Watermelon (Charleston Gray)	cuwcgB407
Csa5G056070	Watermelon (97103) v1	cuwmB389
Csa5G056070	Watermelon (97103) v1	cuwmB436
Csa5G056070	Cucurbita pepo (Zucchini)	cpecuB435
Csa5G056070	Cucurbita pepo (Zucchini)	cpecuB448
Csa5G056070	Bottle gourd (USVL1VR-Ls)	culsiB338
Csa5G056070	Melon (DHL92) v3.6.1	cumedB364
Csa5G056070	Melon (DHL92) v3.6.1	cumedB365
Csa5G056070	Silver-seed gourd	carcuB0198
Csa5G056070	Watermelon (97103) v2	cuwmbB397
Csa5G056070	Wax gourd	cuwgoB507