CmaCh04G009880 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G009880
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 5093988 .. 5095225 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGATTATTGGGTTTCTAAATCTTTTCATTTATCCATTTTTAAACATGATTATTATAAGTCAATTATAATTATCTTTTATTTTCTTCCTTTGTTCTTCAGGCTATCCCTCCCATGAATGACAACCCAGTAGAACATTTGGATTCTACTTACAGACATGTAAGTGGATGACCTAAATTTTTGTGTTTGTGTTTGTTTTGTTTAAGGTTTTGTTAATTAAAAGAAATTGTTGTTGTCGCTGTCGATGTGATATGCAGGTAGTGGATGTGATTTTTACGAGCCTTTTGAATTTTTTAGGCAGATTAGGCGGTCTCTATATTAATCTAGGGGGTCAAGGCTATCTTCAAATTTATTCTCCTCGAGCCTTTTGGGATGTTGATTCATTTCGAGAAATGTTGCGTAAGATTTTCTCTTCTGTATTGTCGGACTGTTGATCCTATGAATGGATTCTAATTAACTGGCTGGCTTAATACGAGTAATGAATGCAGGTGAGGTGCTTAGTGATCAGCATAGGGTTCTGCAAGAGAATGATGCAATTATTTGGCATAATACAAATTTGCAGTCTTTGTTTAGTCTCATCCCTCAAGAGCGTCGAGTAATAGGTACGTATCTATTATGTAATCAATTTGTGGCTAGAAAGTGCTGATAGCTCCGTTTGAATATCGACCTCCATATTTAAGTTTACTTAACTTAGTTTTTATGGATGTTTATAGGGTGCTTGCTAGAGGATCAGTATGGAAATAAACAAGAAATTAAGATTCATGACTTTTTGCGATTTTTGGTTCATCCTAATGAAAATTTGGTGTTTGTGGTATGTATCACTCCAAAGAATCTATTGGGATTAGGTATGTAAAATTAAGAATATTTGTTTCTTTATTTATTGGGATTAGGTCGGTGACTTTCGAAATTACAGAGTGCTCGAAGAAGAGATTGATCAATATGTCAAAGGTAATAAATTTTTGGAACAACAATTCAATTAGATAATGTATTAAAAAAAGAATGAACTGTTTTTTTTTTTTTTTTTTGTAGTTTCGGACCCCGGGACACCTACAAATCTGTGTGTCCGATTCATTTGTCAAGAATGTCAACGAAGATGGAATCTTATATAAGGTTAAGAGTATCTCTAAACGAATGTCTCATGCTTAATGTCTTAGCTTGGATTTAACTTCTCAATAATTATCAAACGATGAACATTTCATCGTATGGTTTTCGAGTTAAATTTGTTAATGCACATTTTCTCA

mRNA sequence

TGATTATTGGGTTTCTAAATCTTTTCATTTATCCATTTTTAAACATGATTATTATAAGTCAATTATAATTATCTTTTATTTTCTTCCTTTGTTCTTCAGGCTATCCCTCCCATGAATGACAACCCAGTAGAACATTTGGATTCTACTTACAGACATGTAGTGGATGTGATTTTTACGAGCCTTTTGAATTTTTTAGGCAGATTAGGCGGTCTCTATATTAATCTAGGGGGTCAAGGCTATCTTCAAATTTATTCTCCTCGAGCCTTTTGGGATGTTGATTCATTTCGAGAAATGTTGCGTGAGGTGCTTAGTGATCAGCATAGGGTTCTGCAAGAGAATGATGCAATTATTTGGCATAATACAAATTTGCAGTCTTTGTTTAGTCTCATCCCTCAAGAGCGTCGAGTAATAGGGTGCTTGCTAGAGGATCAGTATGGAAATAAACAAGAAATTAAGATTCATGACTTTTTGCGATTTTTGGTTCATCCTAATGAAAATTTGGTGTTTGTGGTCGGTGACTTTCGAAATTACAGAGTGCTCGAAGAAGAGATTGATCAATATGTCAAAGTTTCGGACCCCGGGACACCTACAAATCTGTGTGTCCGATTCATTTGTCAAGAATGTCAACGAAGATGGAATCTTATATAAGGTTAAGAGTATCTCTAAACGAATGTCTCATGCTTAATGTCTTAGCTTGGATTTAACTTCTCAATAATTATCAAACGATGAACATTTCATCGTATGGTTTTCGAGTTAAATTTGTTAATGCACATTTTCTCA

Coding sequence (CDS)

ATGAATGACAACCCAGTAGAACATTTGGATTCTACTTACAGACATGTAGTGGATGTGATTTTTACGAGCCTTTTGAATTTTTTAGGCAGATTAGGCGGTCTCTATATTAATCTAGGGGGTCAAGGCTATCTTCAAATTTATTCTCCTCGAGCCTTTTGGGATGTTGATTCATTTCGAGAAATGTTGCGTGAGGTGCTTAGTGATCAGCATAGGGTTCTGCAAGAGAATGATGCAATTATTTGGCATAATACAAATTTGCAGTCTTTGTTTAGTCTCATCCCTCAAGAGCGTCGAGTAATAGGGTGCTTGCTAGAGGATCAGTATGGAAATAAACAAGAAATTAAGATTCATGACTTTTTGCGATTTTTGGTTCATCCTAATGAAAATTTGGTGTTTGTGGTCGGTGACTTTCGAAATTACAGAGTGCTCGAAGAAGAGATTGATCAATATGTCAAAGTTTCGGACCCCGGGACACCTACAAATCTGTGTGTCCGATTCATTTGTCAAGAATGTCAACGAAGATGGAATCTTATATAA

Protein sequence

MNDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINLGGQGYLQIYSPRAFWDVDSFREMLREVLSDQHRVLQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTPTNLCVRFICQECQRRWNLI
Homology
[Close]
BLAST of CmaCh04G009880 vs. TrEMBL
Match: A0A0A0KJD0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G056070 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.1e-36
Identity = 76/89 (85.39%), Postives = 83/89 (93.26%), Query Frame = 1 

Query: 16  VVDVIFTSLLNFLGRLGGLYINLGGQGYLQIYSPRAFWDVDSFREMLREVLSDQHRVLQE 75
           VVDVIFTSLLNFLGRLGGLYINL GQGYLQI+SPRAFW+VDSFREMLREVLSDQHRV QE
Sbjct: 3   VVDVIFTSLLNFLGRLGGLYINLRGQGYLQIHSPRAFWNVDSFREMLREVLSDQHRVPQE 62

Query: 76  NDAIIWHNTNLQSLFSLIPQERRVIGCLL 105
           NDAI+WH TNLQ+LF+  P+ERR+IG LL
Sbjct: 63  NDAIVWHRTNLQALFNHFPRERRIIGTLL 91

[Close]
BLAST of CmaCh04G009880 vs. NCBI nr
Match: gi|700194491|gb|KGN49668.1| (hypothetical protein Csa_5G056070 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 7.3e-36
Identity = 76/89 (85.39%), Postives = 83/89 (93.26%), Query Frame = 1 

Query: 16  VVDVIFTSLLNFLGRLGGLYINLGGQGYLQIYSPRAFWDVDSFREMLREVLSDQHRVLQE 75
           VVDVIFTSLLNFLGRLGGLYINL GQGYLQI+SPRAFW+VDSFREMLREVLSDQHRV QE
Sbjct: 3   VVDVIFTSLLNFLGRLGGLYINLRGQGYLQIHSPRAFWNVDSFREMLREVLSDQHRVPQE 62

Query: 76  NDAIIWHNTNLQSLFSLIPQERRVIGCLL 105
           NDAI+WH TNLQ+LF+  P+ERR+IG LL
Sbjct: 63  NDAIVWHRTNLQALFNHFPRERRIIGTLL 91

The following BLAST results are available for this feature:
BLAST of CmaCh04G009880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G009880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJD0_CUCSA5.1e-3685.39Uncharacterized protein OS=Cucumis sativus GN=Csa_5G056070 PE=4 SV=1[more]
BLAST of CmaCh04G009880 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G009880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194491|gb|KGN49668.1|7.3e-3685.39hypothetical protein Csa_5G056070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G009880.1CmaCh04G009880.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G009880Csa5G056070Cucumber (Chinese Long) v2cmacuB741
CmaCh04G009880CmoCh04G010650Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G009880Lsi04G011760Bottle gourd (USVL1VR-Ls)cmalsiB679
CmaCh04G009880Cp4.1LG01g07700Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G009880CsGy5G011510Cucumber (Gy14) v2cgybcmaB665
CmaCh04G009880Carg00102Silver-seed gourdcarcmaB0948
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G009880Silver-seed gourdcarcmaB0243
CmaCh04G009880Cucumber (Chinese Long) v3cmacucB0878
CmaCh04G009880Watermelon (97103) v2cmawmbB780
CmaCh04G009880Wax gourdcmawgoB0889
CmaCh04G009880Cucurbita maxima (Rimu)cmacmaB531
CmaCh04G009880Cucurbita moschata (Rifu)cmacmoB731
CmaCh04G009880Wild cucumber (PI 183967)cmacpiB750
CmaCh04G009880Melon (DHL92) v3.5.1cmameB660
CmaCh04G009880Watermelon (Charleston Gray)cmawcgB673
CmaCh04G009880Cucurbita pepo (Zucchini)cmacpeB723
CmaCh04G009880Melon (DHL92) v3.6.1cmamedB748