Cp4.1LG01g07700 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g07700
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 5304788 .. 5305178 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGTAGTGGATGTGATTTTCACGAGCCTTTTGAATTTTTTAGGCAGATTAGGCGGTCTCTATATTAATCTACGGGGTCAAGGTTATCTTCAAATTTATTCTCCTCGTGCCTTTTGGGATGTTGATTCATTTCGAGAAATGTTGCGTAAGATTTTCTCTTTTTGTATTATCAAACAGCTGATCCTGTTAACAGATTCTTATTAATGGGCTAATATGAGTAATGAATGCAGGGGAGGTTCTTAGTGATCAACATAGGGTTCCGCAAGAGAATGATGCAATTATTTGGCATAATACAAATTTGCAATCTTTGTTTAGTCTCATTCCTCAAGAGCGTCGAGTAATAGGTACGTTTATATTATGTAATCAATTTGTGGCTAGAGAGTGCTGA

mRNA sequence

ATGCAGGTAGTGGATGTGATTTTCACGAGCCTTTTGAATTTTTTAGGCAGATTAGGCGGTCTCTATATTAATCTACGGGGTCAAGGTTATCTTCAAATTTATTCTCCTCGTGCCTTTTGGGATGTTGATTCATTTCGAGAAATGTTGCGGGAGGTTCTTAGTGATCAACATAGGGTTCCGCAAGAGAATGATGCAATTATTTGGCATAATACAAATTTGCAATCTTTGTTTAGTCTCATTCCTCAAGAGCGTCGAGTAATAGGTACGTTTATATTATGTAATCAATTTGTGGCTAGAGAGTGCTGA

Coding sequence (CDS)

ATGCAGGTAGTGGATGTGATTTTCACGAGCCTTTTGAATTTTTTAGGCAGATTAGGCGGTCTCTATATTAATCTACGGGGTCAAGGTTATCTTCAAATTTATTCTCCTCGTGCCTTTTGGGATGTTGATTCATTTCGAGAAATGTTGCGGGAGGTTCTTAGTGATCAACATAGGGTTCCGCAAGAGAATGATGCAATTATTTGGCATAATACAAATTTGCAATCTTTGTTTAGTCTCATTCCTCAAGAGCGTCGAGTAATAGGTACGTTTATATTATGTAATCAATTTGTGGCTAGAGAGTGCTGA

Protein sequence

MQVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIYSPRAFWDVDSFREMLREVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGTFILCNQFVAREC
Homology
[Close]
BLAST of Cp4.1LG01g07700 vs. TrEMBL
Match: A0A0A0KJD0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G056070 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.3e-39
Identity = 80/94 (85.11%), Postives = 88/94 (93.62%), Query Frame = 1 

Query: 1  MQVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIYSPRAFWDVDSFREMLREVLSDQHRVP 60
          MQVVDVIFTSLLNFLGRLGGLYINLRGQGYLQI+SPRAFW+VDSFREMLREVLSDQHRVP
Sbjct: 1  MQVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIHSPRAFWNVDSFREMLREVLSDQHRVP 60

Query: 61 QENDAIIWHNTNLQSLFSLIPQERRVIGTFILCN 95
          QENDAI+WH TNLQ+LF+  P+ERR+IGT +  N
Sbjct: 61 QENDAIVWHRTNLQALFNHFPRERRIIGTLLTRN 94

[Close]
BLAST of Cp4.1LG01g07700 vs. NCBI nr
Match: gi|700194491|gb|KGN49668.1| (hypothetical protein Csa_5G056070 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 1.8e-39
Identity = 80/94 (85.11%), Postives = 88/94 (93.62%), Query Frame = 1 

Query: 1  MQVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIYSPRAFWDVDSFREMLREVLSDQHRVP 60
          MQVVDVIFTSLLNFLGRLGGLYINLRGQGYLQI+SPRAFW+VDSFREMLREVLSDQHRVP
Sbjct: 1  MQVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIHSPRAFWNVDSFREMLREVLSDQHRVP 60

Query: 61 QENDAIIWHNTNLQSLFSLIPQERRVIGTFILCN 95
          QENDAI+WH TNLQ+LF+  P+ERR+IGT +  N
Sbjct: 61 QENDAIVWHRTNLQALFNHFPRERRIIGTLLTRN 94

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g07700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g07700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJD0_CUCSA1.3e-3985.11Uncharacterized protein OS=Cucumis sativus GN=Csa_5G056070 PE=4 SV=1[more]
BLAST of Cp4.1LG01g07700 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g07700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194491|gb|KGN49668.1|1.8e-3985.11hypothetical protein Csa_5G056070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g07700.1Cp4.1LG01g07700.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g07700CmaCh04G009880Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g07700CmoCh04G010650Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g07700Csa5G056070Cucumber (Chinese Long) v2cpecuB428
Cp4.1LG01g07700Lsi04G011760Bottle gourd (USVL1VR-Ls)cpelsiB361
Cp4.1LG01g07700CsGy5G011510Cucumber (Gy14) v2cgybcpeB638
Cp4.1LG01g07700Carg00102Silver-seed gourdcarcpeB0938
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g07700Wax gourdcpewgoB0553
Cp4.1LG01g07700Cucurbita pepo (Zucchini)cpecpeB374
Cp4.1LG01g07700Cucurbita maxima (Rimu)cmacpeB722
Cp4.1LG01g07700Cucurbita moschata (Rifu)cmocpeB674
Cp4.1LG01g07700Wild cucumber (PI 183967)cpecpiB433
Cp4.1LG01g07700Wild cucumber (PI 183967)cpecpiB436
Cp4.1LG01g07700Cucumber (Chinese Long) v2cpecuB429
Cp4.1LG01g07700Watermelon (Charleston Gray)cpewcgB409
Cp4.1LG01g07700Melon (DHL92) v3.5.1cpemeB383
Cp4.1LG01g07700Melon (DHL92) v3.6.1cpemedB444
Cp4.1LG01g07700Silver-seed gourdcarcpeB0259
Cp4.1LG01g07700Cucumber (Chinese Long) v3cpecucB0533