CmoCh04G010650 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G010650
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 5341555 .. 5343298 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGTAGTGGATGTGATTTTTACGAGCCTTTTGAATTTTTTAGGCAGATTAGGCGGTCTCTATATTAATCTACGGGGTCAAGGTTATCTTCAAATTTATTCTCCTCGAGCCTTTTGGGATGTTGATTCATTTCGAGAAATGTTGCGTAAGATTTTCTCTTTTATATTGTTGAAGAGTTGATCCTATGAATGGATTCTAATTAACGGGCTAATACGAGTAATGAATGCAGGGGAGGTACTTAGTGATCAGCATAGGGTTCCGCAAGAGAATGATGCAATTATTTGGCATAATACAAATTTACAATCTTTGTTTAGTCTCATTCCTCAAGAGCGTCGAGTAATAGGTACGTTTATAGTACGTAATCAATTTGTGGCTAGAAAGTGCTGATAGCTCGGTTTGAATATTGACCTCCATATTTAAGTTTACTTAACTTAGTTTTTATGGATGTTTATAGGATGCTTGCTAGAGGATCAGTATGGAAATAAACAAGAAATTAAGATTCATGACTTTTTGCGTTTTTTGGTTCATCCTAATGAAAATTTGGTGTTTGTGGTATGTATCACTTGAAAGAAAGCAAAAGCGCTTTTCTCAACTAAAATTAAGAATATTTATTAATTTATTTATCGGGATTAGGTCGGTGACTTTCGAAATTACCGAGTGCTCGAGGAAGAGATCGATCAATATGTCAAAGGTACTAATTTTTTTCACTTCTTTCTTTTTACATGATGAAGGTACTAAATTTTTCCACTTCTTTCTTTTTACATGATGAATTTTGGAATGATAATTCAATTAGTTAATGTATTAAAAGATGAATGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAGTTTCGGACCCCGGGACACCTATGAATCTGTGTGTCCGATTCATTTGTCAAGAATGTCAACGAAGATGGAATCTTATATAAGGTTAAGAGTATCTCGAAACGAATATCTCATGCTTAATGTCTTGCTTGAATTTAACTTTTCCTCAATAATTATTCAACTCGATAAACATACCATATGATTTTCGAGTTAATTTTTTTTAATTTTAGTCGACATTTAGTGCACATTTTGTGATTTCTTATAGTTTCAATTCTTTTAATTATGTTAATAGAGTTTGTAACTCATTTTATTTTGGTTTAAAAATAAAAGTATTTCAATTTAATCAAGAAGTTCATATTGTTTCAATAATTTTAAAATCTCATCTAAAGTTCATATATTTGAAAGTATATAATACAATAAATAAATCAATCAATCAATCAATCAAAAAGCATGTCATTTATGCGAGTGGGCAAGAGCCATGGTGGCTGCATGTCACTGCAAATCAATAAGTTAATGTTATGAAGGTCAAGAATGAAGAGATTACAGAAGTTATGGCAGATAAAAACACCACCAATAATTACAAAATTCAAGATTCGACTGACAAAAAGATATAAATCAGAAGTGTTCCATCGTATTCTTTATTCAGATCTTGTAAGCAGAAGAAATAGCTCCTCATCGGCTATTGCTCCCATTTCCATTGCTCTTTCTAATGCACTTAATCCTCCACCGTCTTTGATGGATGGTCGTGCACCTCTGTTTATAGAAGTTACAACAGGCAGAAACACAGGTAATGAAATTGTATAA

mRNA sequence

ATGCAGGTAGTGGATGTGATTTTTACGAGCCTTTTGAATTTTTTAGGCAGATTAGGCGGTCTCTATATTAATCTACGGGGTCAAGGTTATCTTCAAATTTATTCTCCTCGAGCCTTTTGGGATGTTGATTCATTTCGAGAAATGTTGCGGGAGGTACTTAGTGATCAGCATAGGGTTCCGCAAGAGAATGATGCAATTATTTGGCATAATACAAATTTACAATCTTTGTTTAGTCTCATTCCTCAAGAGCGTCGAGTAATAGGTACGTTTATAGTACGATGCTTGCTAGAGGATCAGTATGGAAATAAACAAGAAATTAAGATTCATGACTTTTTGCGTTTTTTGGTTCATCCTAATGAAAATTTGGTGTTTGTGGTCGGTGACTTTCGAAATTACCGAGTGCTCGAGGAAGAGATCGATCAATATGTCAAAGATCTTGTAAGCAGAAGAAATAGCTCCTCATCGGCTATTGCTCCCATTTCCATTGCTCTTTCTAATGCACTTAATCCTCCACCGTCTTTGATGGATGGTCGTGCACCTCTGTTTATAGAAGTTACAACAGGCAGAAACACAGGTAATGAAATTGTATAA

Coding sequence (CDS)

ATGCAGGTAGTGGATGTGATTTTTACGAGCCTTTTGAATTTTTTAGGCAGATTAGGCGGTCTCTATATTAATCTACGGGGTCAAGGTTATCTTCAAATTTATTCTCCTCGAGCCTTTTGGGATGTTGATTCATTTCGAGAAATGTTGCGGGAGGTACTTAGTGATCAGCATAGGGTTCCGCAAGAGAATGATGCAATTATTTGGCATAATACAAATTTACAATCTTTGTTTAGTCTCATTCCTCAAGAGCGTCGAGTAATAGGTACGTTTATAGTACGATGCTTGCTAGAGGATCAGTATGGAAATAAACAAGAAATTAAGATTCATGACTTTTTGCGTTTTTTGGTTCATCCTAATGAAAATTTGGTGTTTGTGGTCGGTGACTTTCGAAATTACCGAGTGCTCGAGGAAGAGATCGATCAATATGTCAAAGATCTTGTAAGCAGAAGAAATAGCTCCTCATCGGCTATTGCTCCCATTTCCATTGCTCTTTCTAATGCACTTAATCCTCCACCGTCTTTGATGGATGGTCGTGCACCTCTGTTTATAGAAGTTACAACAGGCAGAAACACAGGTAATGAAATTGTATAA
Homology
[Close]
BLAST of CmoCh04G010650 vs. TrEMBL
Match: A0A0A0KJD0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G056070 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.1e-39
Identity = 80/93 (86.02%), Postives = 88/93 (94.62%), Query Frame = 1 

Query: 1  MQVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIYSPRAFWDVDSFREMLREVLSDQHRVP 60
          MQVVDVIFTSLLNFLGRLGGLYINLRGQGYLQI+SPRAFW+VDSFREMLREVLSDQHRVP
Sbjct: 1  MQVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIHSPRAFWNVDSFREMLREVLSDQHRVP 60

Query: 61 QENDAIIWHNTNLQSLFSLIPQERRVIGTFIVR 94
          QENDAI+WH TNLQ+LF+  P+ERR+IGT + R
Sbjct: 61 QENDAIVWHRTNLQALFNHFPRERRIIGTLLTR 93

[Close]
BLAST of CmoCh04G010650 vs. NCBI nr
Match: gi|700194491|gb|KGN49668.1| (hypothetical protein Csa_5G056070 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 1.6e-39
Identity = 80/93 (86.02%), Postives = 88/93 (94.62%), Query Frame = 1 

Query: 1  MQVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIYSPRAFWDVDSFREMLREVLSDQHRVP 60
          MQVVDVIFTSLLNFLGRLGGLYINLRGQGYLQI+SPRAFW+VDSFREMLREVLSDQHRVP
Sbjct: 1  MQVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIHSPRAFWNVDSFREMLREVLSDQHRVP 60

Query: 61 QENDAIIWHNTNLQSLFSLIPQERRVIGTFIVR 94
          QENDAI+WH TNLQ+LF+  P+ERR+IGT + R
Sbjct: 61 QENDAIVWHRTNLQALFNHFPRERRIIGTLLTR 93

The following BLAST results are available for this feature:
BLAST of CmoCh04G010650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G010650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJD0_CUCSA1.1e-3986.02Uncharacterized protein OS=Cucumis sativus GN=Csa_5G056070 PE=4 SV=1[more]
BLAST of CmoCh04G010650 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G010650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194491|gb|KGN49668.1|1.6e-3986.02hypothetical protein Csa_5G056070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G010650.1CmoCh04G010650.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G010650CmaCh04G009880Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G010650Csa5G056070Cucumber (Chinese Long) v2cmocuB731
CmoCh04G010650Lsi04G011760Bottle gourd (USVL1VR-Ls)cmolsiB672
CmoCh04G010650Cp4.1LG01g07700Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G010650CsGy5G011510Cucumber (Gy14) v2cgybcmoB640
CmoCh04G010650Carg00102Silver-seed gourdcarcmoB0923
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G010650Wild cucumber (PI 183967)cmocpiB735
CmoCh04G010650Melon (DHL92) v3.5.1cmomeB651
CmoCh04G010650Watermelon (Charleston Gray)cmowcgB675
CmoCh04G010650Cucurbita pepo (Zucchini)cmocpeB675
CmoCh04G010650Melon (DHL92) v3.6.1cmomedB741
CmoCh04G010650Silver-seed gourdcarcmoB0251
CmoCh04G010650Cucumber (Chinese Long) v3cmocucB0861
CmoCh04G010650Watermelon (97103) v2cmowmbB754
CmoCh04G010650Wax gourdcmowgoB0888
CmoCh04G010650Cucurbita moschata (Rifu)cmocmoB464
CmoCh04G010650Cucurbita maxima (Rimu)cmacmoB730