Carg00102 (gene) Silver-seed gourd

NameCarg00102
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_001 : 476814 .. 477703 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTTGATTCATTTCGAGAAATGTTGCGTAAGATTTTCTCTTTTATATTGTTGAAGAGTTGATCCTATGAATGGATTCTAATTAATTGGCTAATACGAGTAATGAATGCAGGGGAGGTACTTAGTGATCAGCATAGGGTTCCGCAAGAGAATGATGCAATTATTTGGCATAATACAAATTTGCAATCTTTGTTTAGTCTCATTCCTCAAGAACGTCGAGTAATAGGTACGTTTATAGTACGTAATCAATTTGTGGCTAGAAAGTGCTGATAGCTCGGTTTGAATATCGACCTCCATATTTAAGTTTACTTAACTTAGTTTTTATGGATGTTTATAGGATGCTTGCTAGAGGATCAATATGGAAATAAACAAGAAATTAAGATTCATGACTTTTTGCGATTTTTGGTTCATCCTAATGAAAATTTGGTGTTTGTGGTATGTATCACTTGAAAGAAAACAAAAGCGTTTTCTCGATTAAAATTAAGAATATTTGTTTGTTTATTTATTGGGATTAGGTCGGTGACTTTCGAAATTACAGAGTGCTCGAGGAAGAGATCGATCAATATGTCAAAGGTACTAAATTTTTTCACTTCTTTCTTTTTATAAATTTTGGAATGATAATTCAATTAGTTAATGTATTAAAAGATGAATGATTTTTTTTTTCTTTTTGTAGTTTCGGACCCCGGGACACCTACGAATCTGTGTGTTCGATTCATTTGTCAAGAATGTCAACGAAGATGGAATCTTATATAAGGTTAAGAGTATCTCGAAACGAATATCTCATGCTTAATGTCTTAGTTTGAATTTAACTTTTCCTCAATAATTATTCAACTCGATGAACATATCATATGATTTTCGAGTTAATTTTTTTTTAATTTTAGTTAACATTTAG

mRNA sequence

TGTTGATTCATTTCGAGAAATGTTGCGTAAGATTTTCTCTTTTATATTGTTGAAGAGTTGATCCTATGAATGGATTCTAATTAATTGGCTAATACGAGTAATGAATGCAGGGGAGGTACTTAGTGATCAGCATAGGGTTCCGCAAGAGAATGATGCAATTATTTGGCATAATACAAATTTGCAATCTTTGTTTAGTCTCATTCCTCAAGAACGTCGAGTAATAGGATGCTTGCTAGAGGATCAATATGGAAATAAACAAGAAATTAAGATTCATGACTTTTTGCGATTTTTGGTTCATCCTAATGAAAATTTGGTGTTTGTGGTCGGTGACTTTCGAAATTACAGAGTGCTCGAGGAAGAGATCGATCAATATGTCAAAGTTAACATTTAG

Coding sequence (CDS)

ATGAATGCAGGGGAGGTACTTAGTGATCAGCATAGGGTTCCGCAAGAGAATGATGCAATTATTTGGCATAATACAAATTTGCAATCTTTGTTTAGTCTCATTCCTCAAGAACGTCGAGTAATAGGATGCTTGCTAGAGGATCAATATGGAAATAAACAAGAAATTAAGATTCATGACTTTTTGCGATTTTTGGTTCATCCTAATGAAAATTTGGTGTTTGTGGTCGGTGACTTTCGAAATTACAGAGTGCTCGAGGAAGAGATCGATCAATATGTCAAAGTTAACATTTAG

Protein sequence

MNAGEVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVNI
BLAST of Carg00102 vs. NCBI nr
Match: XP_022942054.1 (uncharacterized protein LOC111447242 [Cucurbita moschata])

HSP 1 Score: 188.7 bits (478), Expect = 9.0e-45
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0

Query: 5   EVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL 64
           EVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL
Sbjct: 99  EVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL 158

Query: 65  VHPNENLVFVVGDFRNYRVLEEEIDQYVKVN 96
           VHPNENLVFVVGDFRNYRVLEEEIDQYVKV+
Sbjct: 159 VHPNENLVFVVGDFRNYRVLEEEIDQYVKVS 189

BLAST of Carg00102 vs. NCBI nr
Match: XP_022989850.1 (uncharacterized protein LOC111486913 [Cucurbita maxima])

HSP 1 Score: 184.9 bits (468), Expect = 1.3e-43
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0

Query: 5   EVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL 64
           EVLSDQHRV QENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL
Sbjct: 99  EVLSDQHRVLQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL 158

Query: 65  VHPNENLVFVVGDFRNYRVLEEEIDQYVKVN 96
           VHPNENLVFVVGDFRNYRVLEEEIDQYVKV+
Sbjct: 159 VHPNENLVFVVGDFRNYRVLEEEIDQYVKVS 189

BLAST of Carg00102 vs. NCBI nr
Match: KGN49668.1 (hypothetical protein Csa_5G056070 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 3.2e-10
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0

Query: 5  EVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLL 46
          EVLSDQHRVPQENDAI+WH TNLQ+LF+  P+ERR+IG LL
Sbjct: 51 EVLSDQHRVPQENDAIVWHRTNLQALFNHFPRERRIIGTLL 91

BLAST of Carg00102 vs. TrEMBL
Match: tr|A0A0A0KJD0|A0A0A0KJD0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G056070 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-10
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0

Query: 5  EVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLL 46
          EVLSDQHRVPQENDAI+WH TNLQ+LF+  P+ERR+IG LL
Sbjct: 51 EVLSDQHRVPQENDAIVWHRTNLQALFNHFPRERRIIGTLL 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022942054.19.0e-4598.90uncharacterized protein LOC111447242 [Cucurbita moschata][more]
XP_022989850.11.3e-4397.80uncharacterized protein LOC111486913 [Cucurbita maxima][more]
KGN49668.13.2e-1078.05hypothetical protein Csa_5G056070 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KJD0|A0A0A0KJD0_CUCSA2.1e-1078.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G056070 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00102-RACarg00102-RAmRNA