Csa4G663650 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G663650
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	SnRK1-interacting protein 1
Location	Chr4 : 23033366 .. 23033995 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTCCAAACGTATGCTCATTCCCAGCTCTCAGGACCTCACCTCACTGCCTTATCCTCCATACTCTCTTCCTACTCAACTAGTGAGATTCGACTCCCTCTAACTTCTACTACTTCAAGACGACGCCATCTTCGTCTTGTTTGCTCCAGCAGTGATGCTAATAGTAATAAGAAGGGAGTACCCAATTCCAACTATGTTGTTCCACTTAATAAATCTTTTTCCCCAGCTAACTCATCTTGCATCACTCGACCCCTTGCTGAGATCCTCCGCGATCTAAACAAGAGAATCCCCGATAACATCGCTCAGAAAGCCCCTCATTCTGACACCAATGATCGTTCTCCTGCCACTTTCATCCCTTGGTTTCATGCTAATAGGATGTTGAGTTTCTATGCCCCTGGATGGTGTGGAGAGATACGAGATGTCATATTTTCAGACAATGGTAGTGTAACTGTGGTATATCGTGTGACTGTTCGAGGATCGGATGGAGAAGCACATCGTGAATCGACAGGAACTGTCTCAGCTACTGATAGCAATATTGAGGATCCTGTAGCTGCTGCAGAGGAAATAGCTTTTTGCAAGGCTTGTGCGAGATTTGGCCTCGGTTTGTACCTCTATCATGAAGAATGA

mRNA sequence

ATGGCTCTCCAAACGTATGCTCATTCCCAGCTCTCAGGACCTCACCTCACTGCCTTATCCTCCATACTCTCTTCCTACTCAACTAGTGAGATTCGACTCCCTCTAACTTCTACTACTTCAAGACGACGCCATCTTCGTCTTGTTTGCTCCAGCAGTGATGCTAATAGTAATAAGAAGGGAGTACCCAATTCCAACTATGTTGTTCCACTTAATAAATCTTTTTCCCCAGCTAACTCATCTTGCATCACTCGACCCCTTGCTGAGATCCTCCGCGATCTAAACAAGAGAATCCCCGATAACATCGCTCAGAAAGCCCCTCATTCTGACACCAATGATCGTTCTCCTGCCACTTTCATCCCTTGGTTTCATGCTAATAGGATGTTGAGTTTCTATGCCCCTGGATGGTGTGGAGAGATACGAGATGTCATATTTTCAGACAATGGTAGTGTAACTGTGGTATATCGTGTGACTGTTCGAGGATCGGATGGAGAAGCACATCGTGAATCGACAGGAACTGTCTCAGCTACTGATAGCAATATTGAGGATCCTGTAGCTGCTGCAGAGGAAATAGCTTTTTGCAAGGCTTGTGCGAGATTTGGCCTCGGTTTGTACCTCTATCATGAAGAATGA

Coding sequence (CDS)

ATGGCTCTCCAAACGTATGCTCATTCCCAGCTCTCAGGACCTCACCTCACTGCCTTATCCTCCATACTCTCTTCCTACTCAACTAGTGAGATTCGACTCCCTCTAACTTCTACTACTTCAAGACGACGCCATCTTCGTCTTGTTTGCTCCAGCAGTGATGCTAATAGTAATAAGAAGGGAGTACCCAATTCCAACTATGTTGTTCCACTTAATAAATCTTTTTCCCCAGCTAACTCATCTTGCATCACTCGACCCCTTGCTGAGATCCTCCGCGATCTAAACAAGAGAATCCCCGATAACATCGCTCAGAAAGCCCCTCATTCTGACACCAATGATCGTTCTCCTGCCACTTTCATCCCTTGGTTTCATGCTAATAGGATGTTGAGTTTCTATGCCCCTGGATGGTGTGGAGAGATACGAGATGTCATATTTTCAGACAATGGTAGTGTAACTGTGGTATATCGTGTGACTGTTCGAGGATCGGATGGAGAAGCACATCGTGAATCGACAGGAACTGTCTCAGCTACTGATAGCAATATTGAGGATCCTGTAGCTGCTGCAGAGGAAATAGCTTTTTGCAAGGCTTGTGCGAGATTTGGCCTCGGTTTGTACCTCTATCATGAAGAATGA

Protein sequence

MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKGVPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIPWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKACARFGLGLYLYHEE*

Homology

[Close]

BLAST of Csa4G663650 vs. TrEMBL
Match: A0A0A0L5X0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G663650 PE=4 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 1.3e-115
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 1


Query: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60
           MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG
Sbjct: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of Csa4G663650 vs. TrEMBL
Match: M5XSU2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011537mg PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.8e-67
Identity = 128/160 (80.00%), Postives = 136/160 (85.00%), Query Frame = 1


Query: 50  SSSDANSNKKGVPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSD 109
           SSSD      GVPNSNYVVPL+KSFS +NSSCITRPLAEILRDLNKRIPDNI Q  PH  
Sbjct: 54  SSSDGGKKAGGVPNSNYVVPLDKSFSSSNSSCITRPLAEILRDLNKRIPDNIIQAPPHHH 113

Query: 110 TNDRSPATFIPWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRES 169
           +      TFIPW+HANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVT+RGSDGEAHRES
Sbjct: 114 S------TFIPWYHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTIRGSDGEAHRES 173

Query: 170 TGTVSATDSNIEDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           TGTVS +D    DPV AAEEIAFC+ACARFGLGLYLYHE+
Sbjct: 174 TGTVSPSDGRNADPVTAAEEIAFCRACARFGLGLYLYHED 207

[Close]

BLAST of Csa4G663650 vs. TrEMBL
Match: A0A067JHB6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23055 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.8e-67
Identity = 142/208 (68.27%), Postives = 158/208 (75.96%), Query Frame = 1


Query: 14  PHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCS-----------SSDANSNKKGVP 73
           P L  LS+   S S+ E +       + R  LRLVC+           SSD N  KKGVP
Sbjct: 16  PPLFPLSTCRMSSSSFEDKFGGVCVGNGRSKLRLVCAVGGNTANNNSNSSDGNK-KKGVP 75

Query: 74  NSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPAT-FIPW 133
           NSNYVVPL+KSFS + SSCITRPLAEILRDLNKRIPDNI + +        SP T +IPW
Sbjct: 76  NSNYVVPLDKSFSSSYSSCITRPLAEILRDLNKRIPDNIIKPS--------SPVTTYIPW 135

Query: 134 FHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIE 193
           +HANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVT+RGSDGEA+RESTGTV ++D NI 
Sbjct: 136 YHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTIRGSDGEAYRESTGTVLSSDGNIV 195

Query: 194 DPVAAAEEIAFCKACARFGLGLYLYHEE 210
           DPVAAAEEIAFC+ACARFGLGLYLYHEE
Sbjct: 196 DPVAAAEEIAFCRACARFGLGLYLYHEE 214

[Close]

BLAST of Csa4G663650 vs. TrEMBL
Match: B9RG45_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1439020 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.5e-66
Identity = 134/185 (72.43%), Postives = 146/185 (78.92%), Query Frame = 1


Query: 40  SRRRHLRLVCSSSDANSN---------------KKGVPNSNYVVPLNKSFSPANSSCITR 99
           +RRR  R+VC S+  N+N               KKGVPNSNYVVPL+KSFS + SSCITR
Sbjct: 46  NRRRLRRVVCGSNGNNNNSEVGGGGTGTGNTNKKKGVPNSNYVVPLDKSFSSSYSSCITR 105

Query: 100 PLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIPWFHANRMLSFYAPGWCGEIRDVIF 159
           PLAEILRDLNKRIPDNI   +           TFIPW+HANRMLSFYAPGWCGEIRDVIF
Sbjct: 106 PLAEILRDLNKRIPDNIITPSN----------TFIPWYHANRMLSFYAPGWCGEIRDVIF 165

Query: 160 SDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKACARFGLGLY 210
           SDNGSVTVVYRVT+RGSDGEA+RESTGTVS +D +I DPVAAAEEIAFCKACARFGLGLY
Sbjct: 166 SDNGSVTVVYRVTIRGSDGEAYRESTGTVSPSDGHIVDPVAAAEEIAFCKACARFGLGLY 220

[Close]

BLAST of Csa4G663650 vs. TrEMBL
Match: A0A0B0PCR4_GOSAR (Leucine--tRNA ligase OS=Gossypium arboreum GN=F383_30234 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.5e-66
Identity = 125/167 (74.85%), Postives = 146/167 (87.43%), Query Frame = 1


Query: 46  RLVCSSSDANSN---KKGVPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIA 105
           RL CSS++ NSN   KKGVP+SNYVVPL KSFSP+NSSCITRPL EILRDLNKRIP NI 
Sbjct: 40  RLHCSSNNNNSNCDAKKGVPDSNYVVPLEKSFSPSNSSCITRPLIEILRDLNKRIPHNII 99

Query: 106 QKAPHSDTNDRSPATFIPWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSD 165
           +  P+S       +TF+PW+HANRMLSFYAPGWCGE+RDVIF++NG++TVVYR+T+RGSD
Sbjct: 100 KSPPNS-------STFLPWYHANRMLSFYAPGWCGEVRDVIFANNGTITVVYRLTIRGSD 159

Query: 166 GEAHRESTGTVSATDSNIEDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           GEAHRESTGTVS++  N+ DPV+AAEEIAFC+ACARFGLGLYLYHEE
Sbjct: 160 GEAHRESTGTVSSSKINMVDPVSAAEEIAFCRACARFGLGLYLYHEE 199

[Close]

BLAST of Csa4G663650 vs. TAIR10
Match: AT5G47870.1 (AT5G47870.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-62
Identity = 122/196 (62.24%), Postives = 145/196 (73.98%), Query Frame = 1


Query: 17  TALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSN----KKGVPNSNYVVPLNK 76
           T+ +  +SS ST+  R+ L+   +   +  + CS           KK VPNSNYVVP++K
Sbjct: 8   TSAAFTISSPSTAAARIKLSPFRTVAVNRGVRCSGGGVGGGDAGKKKAVPNSNYVVPIDK 67

Query: 77  SFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIPWFHANRMLSFYA 136
             S   SS ITRPL EILRDLNK+IPDNI  K+    +   + + FIPW+HANRMLSFYA
Sbjct: 68  FSS---SSSITRPLIEILRDLNKKIPDNIV-KSHDPPSTSAATSGFIPWYHANRMLSFYA 127

Query: 137 PGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAF 196
           PGWCGE+RDVIFS+NG+VTVVYR+T+RGSDGEAHRESTGTV+ TD +IEDPV AAEEIAF
Sbjct: 128 PGWCGEVRDVIFSENGNVTVVYRLTIRGSDGEAHRESTGTVTTTDDHIEDPVTAAEEIAF 187

Query: 197 CKACARFGLGLYLYHE 209
           C+ACARFGLGLYLYHE
Sbjct: 188 CRACARFGLGLYLYHE 199

[Close]

BLAST of Csa4G663650 vs. TAIR10
Match: AT1G71310.2 (AT1G71310.2 cobalt ion binding)

HSP 1 Score: 132.5 bits (332), Expect = 3.0e-31
Identity = 66/132 (50.00%), Postives = 89/132 (67.42%), Query Frame = 1


Query: 79  SSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIPWFHANRMLSFYAPGWCGE 138
           +S I+RPLAEIL++LNK++PD++ +    +   D     +IPW   NR+++ +AP W GE
Sbjct: 47  TSGISRPLAEILKELNKKVPDSVIR----TRVEDGCSIKYIPWHIVNRIMNMHAPEWSGE 106

Query: 139 IRDVIFSDNG-SVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKACA 198
           +R V +S +G +VTV YRVT+ G+D E  RESTGT S  D    D V  AE +AF +ACA
Sbjct: 107 VRSVTYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGYGDAVQKAEAMAFRRACA 166

Query: 199 RFGLGLYLYHEE 210
           RFGLGL+LYHE+
Sbjct: 167 RFGLGLHLYHED 174

[Close]

BLAST of Csa4G663650 vs. NCBI nr
Match: gi|449455607|ref|XP_004145544.1| (PREDICTED: uncharacterized protein LOC101203655 [Cucumis sativus])

HSP 1 Score: 423.7 bits (1088), Expect = 1.9e-115
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 1


Query: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60
           MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG
Sbjct: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of Csa4G663650 vs. NCBI nr
Match: gi|659104708|ref|XP_008452970.1| (PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo])

HSP 1 Score: 406.4 bits (1043), Expect = 3.1e-110
Identity = 201/209 (96.17%), Postives = 204/209 (97.61%), Query Frame = 1


Query: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60
           MALQTYAHSQL GPH TALSSI SSYSTSEIRLPL+STTSRR HLRLVCSSSDANS+KKG
Sbjct: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLSSTTSRRPHLRLVCSSSDANSSKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDT+DRSP TFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of Csa4G663650 vs. NCBI nr
Match: gi|802754196|ref|XP_012088661.1| (PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas])

HSP 1 Score: 262.7 bits (670), Expect = 5.5e-67
Identity = 142/208 (68.27%), Postives = 158/208 (75.96%), Query Frame = 1


Query: 14  PHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCS-----------SSDANSNKKGVP 73
           P L  LS+   S S+ E +       + R  LRLVC+           SSD N  KKGVP
Sbjct: 16  PPLFPLSTCRMSSSSFEDKFGGVCVGNGRSKLRLVCAVGGNTANNNSNSSDGNK-KKGVP 75

Query: 74  NSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPAT-FIPW 133
           NSNYVVPL+KSFS + SSCITRPLAEILRDLNKRIPDNI + +        SP T +IPW
Sbjct: 76  NSNYVVPLDKSFSSSYSSCITRPLAEILRDLNKRIPDNIIKPS--------SPVTTYIPW 135

Query: 134 FHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIE 193
           +HANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVT+RGSDGEA+RESTGTV ++D NI 
Sbjct: 136 YHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTIRGSDGEAYRESTGTVLSSDGNIV 195

Query: 194 DPVAAAEEIAFCKACARFGLGLYLYHEE 210
           DPVAAAEEIAFC+ACARFGLGLYLYHEE
Sbjct: 196 DPVAAAEEIAFCRACARFGLGLYLYHEE 214

[Close]

BLAST of Csa4G663650 vs. NCBI nr
Match: gi|596188147|ref|XP_007223444.1| (hypothetical protein PRUPE_ppa011537mg [Prunus persica])

HSP 1 Score: 262.7 bits (670), Expect = 5.5e-67
Identity = 128/160 (80.00%), Postives = 136/160 (85.00%), Query Frame = 1


Query: 50  SSSDANSNKKGVPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSD 109
           SSSD      GVPNSNYVVPL+KSFS +NSSCITRPLAEILRDLNKRIPDNI Q  PH  
Sbjct: 54  SSSDGGKKAGGVPNSNYVVPLDKSFSSSNSSCITRPLAEILRDLNKRIPDNIIQAPPHHH 113

Query: 110 TNDRSPATFIPWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRES 169
           +      TFIPW+HANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVT+RGSDGEAHRES
Sbjct: 114 S------TFIPWYHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTIRGSDGEAHRES 173

Query: 170 TGTVSATDSNIEDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           TGTVS +D    DPV AAEEIAFC+ACARFGLGLYLYHE+
Sbjct: 174 TGTVSPSDGRNADPVTAAEEIAFCRACARFGLGLYLYHED 207

[Close]

BLAST of Csa4G663650 vs. NCBI nr
Match: gi|255543302|ref|XP_002512714.1| (PREDICTED: uncharacterized protein LOC8285737 [Ricinus communis])

HSP 1 Score: 260.0 bits (663), Expect = 3.6e-66
Identity = 134/185 (72.43%), Postives = 146/185 (78.92%), Query Frame = 1


Query: 40  SRRRHLRLVCSSSDANSN---------------KKGVPNSNYVVPLNKSFSPANSSCITR 99
           +RRR  R+VC S+  N+N               KKGVPNSNYVVPL+KSFS + SSCITR
Sbjct: 46  NRRRLRRVVCGSNGNNNNSEVGGGGTGTGNTNKKKGVPNSNYVVPLDKSFSSSYSSCITR 105

Query: 100 PLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIPWFHANRMLSFYAPGWCGEIRDVIF 159
           PLAEILRDLNKRIPDNI   +           TFIPW+HANRMLSFYAPGWCGEIRDVIF
Sbjct: 106 PLAEILRDLNKRIPDNIITPSN----------TFIPWYHANRMLSFYAPGWCGEIRDVIF 165

Query: 160 SDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKACARFGLGLY 210
           SDNGSVTVVYRVT+RGSDGEA+RESTGTVS +D +I DPVAAAEEIAFCKACARFGLGLY
Sbjct: 166 SDNGSVTVVYRVTIRGSDGEAYRESTGTVSPSDGHIVDPVAAAEEIAFCKACARFGLGLY 220

The following BLAST results are available for this feature:

BLAST of Csa4G663650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5X0_CUCSA	1.3e-115	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G663650 PE=4 SV=1	[more]
M5XSU2_PRUPE	3.8e-67	80.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011537mg PE=4 SV=1	[more]
A0A067JHB6_JATCU	3.8e-67	68.27	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23055 PE=4 SV=1	[more]
B9RG45_RICCO	2.5e-66	72.43	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1439020 PE=4 SV=1	[more]
A0A0B0PCR4_GOSAR	2.5e-66	74.85	Leucine--tRNA ligase OS=Gossypium arboreum GN=F383_30234 PE=4 SV=1	[more]

BLAST of Csa4G663650 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G47870.1	1.1e-62	62.24	FUNCTIONS IN: molecular_function unknown	[more]
AT1G71310.2	3.0e-31	50.00	cobalt ion binding	[more]

BLAST of Csa4G663650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455607\|ref\|XP_004145544.1\|	1.9e-115	100.00	PREDICTED: uncharacterized protein LOC101203655 [Cucumis sativus]	[more]
gi\|659104708\|ref\|XP_008452970.1\|	3.1e-110	96.17	PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo]	[more]
gi\|802754196\|ref\|XP_012088661.1\|	5.5e-67	68.27	PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]	[more]
gi\|596188147\|ref\|XP_007223444.1\|	5.5e-67	80.00	hypothetical protein PRUPE_ppa011537mg [Prunus persica]	[more]
gi\|255543302\|ref\|XP_002512714.1\|	3.6e-66	72.43	PREDICTED: uncharacterized protein LOC8285737 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0008152	metabolic process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0003677	DNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU099073	cucumber EST collection version 3.0	transcribed_cluster
CU105035	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G663650.1	Csa4G663650.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU105035	CU105035	transcribed_cluster
CU099073	CU099073	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34050	FAMILY NOT NAMED	coord: 9..209 score: 1.4E
None	No IPR available	PANTHER	PTHR34050:SF3	SUBFAMILY NOT NAMED	coord: 9..209 score: 1.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G663650	Cla023452	Watermelon (97103) v1	cuwmB350
Csa4G663650	MELO3C017029	Melon (DHL92) v3.5.1	cumeB313
Csa4G663650	Lsi04G018100	Bottle gourd (USVL1VR-Ls)	culsiB284
Csa4G663650	MELO3C017029.2	Melon (DHL92) v3.6.1	cumedB298
Csa4G663650	Cla97C11G224870	Watermelon (97103) v2	cuwmbB280
Csa4G663650	Bhi09G002389	Wax gourd	cuwgoB419
Csa4G663650	CSPI04G26960	Wild cucumber (PI 183967)	cpicuB181
Csa4G663650	Cucsa.272170	Cucumber (Gy14) v1	cgycuB387
Csa4G663650	CmaCh01G020170	Cucurbita maxima (Rimu)	cmacuB464
Csa4G663650	CmaCh09G000490	Cucurbita maxima (Rimu)	cmacuB024
Csa4G663650	CmoCh09G000520	Cucurbita moschata (Rifu)	cmocuB015
Csa4G663650	CmoCh01G020750	Cucurbita moschata (Rifu)	cmocuB452
Csa4G663650	Cp4.1LG06g00340	Cucurbita pepo (Zucchini)	cpecuB787
Csa4G663650	Cp4.1LG02g08330	Cucurbita pepo (Zucchini)	cpecuB572
Csa4G663650	CsGy4G025290	Cucumber (Gy14) v2	cgybcuB166
Csa4G663650	Carg08625	Silver-seed gourd	carcuB0113
Csa4G663650	Carg21369	Silver-seed gourd	carcuB0388

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G663650	Cucumber (Chinese Long) v2	cucuB151
Csa4G663650	Watermelon (Charleston Gray)	cuwcgB280