Carg08625 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08625
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Cobalt ion-binding protein
Location	Cucurbita_argyrosperma_scaffold_057 : 206447 .. 207388 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTATCTATGCCCAATCCCAGCTCTCAGGGCCCCACCTCCCTGCATTATCATCCCCCCTTCCCTCTTCCCACTCTGTTGGTGAGGTTCGCCTCCCCCTAATTTCTACCACTCCAAAACACCGCCATCTTCGTGTTGTATGCTCCAGCAGTGATAAGAAGGGAGTACCCAATTCCAACTATGTGGTGCCGCTCAATAAATCATTTTCCGAAGCTAACTCATCCTGCATCACCCGACCCCTTGCCGAGATCCTCCGGGATCTAAACAAGAGAATCCCCGATAACATCGCCCGGAAAGTTCCTGAATCCGCTACTTTCATCCCTTGGTTTCATGCCAATAGAATGCTGAGTTTCTACGCCCCTGGATGGTGTGGAGAGATAGGAGACGTTATATTCTCCGACAATGGAAGCGTGACTGTGGTGTATCGTGTGACTGTAAGAGGATCTGATGGAGAGGCACACCGTGAATCGACTGGAACAGTATCAGCCACCAATGGCAGTAATGAAGATCCTGTAGCTGCGGCGGAGGAAATAGCTTTTTGCAAGGCTTGTGCAAGATTTGGGCTCGGTTTGTATCTGTACCATCAAGAATGAATGAATGAATGAATGCCATGCTTATGCTCATGCTCATGCTCATGCTCATGCTCATGCTCATGCTCATGCTCATGCTTATGCTTCCAACATGTATTGAATTAAAGTTATTTTTGTAGAAATGGGTATAACGTTGGCCTTCAACTTTAGAAACCTCATTTCTGTGGTGAATTAAAGTTACAATTGTTTACTTTTGTTGTGCACGTGCATCTCTTGTGTGCCCATATTCAAACTTTAATTTTTATTTTATTAATTTTTTTTTTTTGGGTCTATTTTTAAGGCCGAGATTTGTTAATACGGGCTTTGCTTTGGGCTTCTATTGGGCTTTGGTTTCAAGCCCGAGATTGTTAA

mRNA sequence

ATGGTTATCTATGCCCAATCCCAGCTCTCAGGGCCCCACCTCCCTGCATTATCATCCCCCCTTCCCTCTTCCCACTCTGTTGGTGAGGTTCGCCTCCCCCTAATTTCTACCACTCCAAAACACCGCCATCTTCGTGTTGTATGCTCCAGCAGTGATAAGAAGGGAGTACCCAATTCCAACTATGTGGTGCCGCTCAATAAATCATTTTCCGAAGCTAACTCATCCTGCATCACCCGACCCCTTGCCGAGATCCTCCGGGATCTAAACAAGAGAATCCCCGATAACATCGCCCGGAAAGTTCCTGAATCCGCTACTTTCATCCCTTGGTTTCATGCCAATAGAATGCTGAGTTTCTACGCCCCTGGATGGTGTGGAGAGATAGGAGACGTTATATTCTCCGACAATGGAAGCGTGACTGTGGTGTATCGTGTGACTGTAAGAGGATCTGATGGAGAGGCACACCGTGAATCGACTGGAACAGTATCAGCCACCAATGGCAGTAATGAAGATCCTGTAGCTGCGGCGGAGGAAATAGCTTTTTGCAAGGCTTGTGCAAGATTTGGGCTCGGCCGAGATTTGTTAATACGGGCTTTGCTTTGGGCTTCTATTGGGCTTTGGTTTCAAGCCCGAGATTGTTAA

Coding sequence (CDS)

ATGGTTATCTATGCCCAATCCCAGCTCTCAGGGCCCCACCTCCCTGCATTATCATCCCCCCTTCCCTCTTCCCACTCTGTTGGTGAGGTTCGCCTCCCCCTAATTTCTACCACTCCAAAACACCGCCATCTTCGTGTTGTATGCTCCAGCAGTGATAAGAAGGGAGTACCCAATTCCAACTATGTGGTGCCGCTCAATAAATCATTTTCCGAAGCTAACTCATCCTGCATCACCCGACCCCTTGCCGAGATCCTCCGGGATCTAAACAAGAGAATCCCCGATAACATCGCCCGGAAAGTTCCTGAATCCGCTACTTTCATCCCTTGGTTTCATGCCAATAGAATGCTGAGTTTCTACGCCCCTGGATGGTGTGGAGAGATAGGAGACGTTATATTCTCCGACAATGGAAGCGTGACTGTGGTGTATCGTGTGACTGTAAGAGGATCTGATGGAGAGGCACACCGTGAATCGACTGGAACAGTATCAGCCACCAATGGCAGTAATGAAGATCCTGTAGCTGCGGCGGAGGAAATAGCTTTTTGCAAGGCTTGTGCAAGATTTGGGCTCGGCCGAGATTTGTTAATACGGGCTTTGCTTTGGGCTTCTATTGGGCTTTGGTTTCAAGCCCGAGATTGTTAA

Protein sequence

MVIYAQSQLSGPHLPALSSPLPSSHSVGEVRLPLISTTPKHRHLRVVCSSSDKKGVPNSNYVVPLNKSFSEANSSCITRPLAEILRDLNKRIPDNIARKVPESATFIPWFHANRMLSFYAPGWCGEIGDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATNGSNEDPVAAAEEIAFCKACARFGLGRDLLIRALLWASIGLWFQARDC

Homology

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BLAST of Carg08625 vs. NCBI nr
Match: XP_023536296.1 (DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023536297.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375.2 bits (962), Expect = 1.5e-100
Identity = 186/190 (97.89%), Postives = 187/190 (98.42%), Query Frame = 0


Query: 1   MVIYAQSQLSGPHLPALSSPLPSSHSVGEVRLPLISTTPKHRHLRVVCSSSDKKGVPNSN 60
           MVIYAQSQLSGPHLPALSSPLPSSHSV EVRLPLISTTPKHRHLRVVCSSSDKKGVPNSN
Sbjct: 1   MVIYAQSQLSGPHLPALSSPLPSSHSVSEVRLPLISTTPKHRHLRVVCSSSDKKGVPNSN 60

Query: 61  YVVPLNKSFSEANSSCITRPLAEILRDLNKRIPDNIARKVPESATFIPWFHANRMLSFYA 120
           YVVPLNKSFS ANSSCITRPLAEILRDLNKRIPDNIA+KVPESATFIPWFHANRMLSFYA
Sbjct: 61  YVVPLNKSFSAANSSCITRPLAEILRDLNKRIPDNIAQKVPESATFIPWFHANRMLSFYA 120

Query: 121 PGWCGEIGDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATNGSNEDPVAAAEEIAF 180
           PGWCGEI DVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATNGSNEDPVAAAEEIAF
Sbjct: 121 PGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATNGSNEDPVAAAEEIAF 180

Query: 181 CKACARFGLG 191
           CKACARFGLG
Sbjct: 181 CKACARFGLG 190

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BLAST of Carg08625 vs. NCBI nr
Match: XP_022936923.1 (DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >XP_022936924.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 371.3 bits (952), Expect = 2.2e-99
Identity = 184/190 (96.84%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 1   MVIYAQSQLSGPHLPALSSPLPSSHSVGEVRLPLISTTPKHRHLRVVCSSSDKKGVPNSN 60
           MVIYAQSQLSGPHLPALSSPLPSSHSV EVRLPL STTPKHRHLRVVCSSSDKKGVPNSN
Sbjct: 1   MVIYAQSQLSGPHLPALSSPLPSSHSVSEVRLPLNSTTPKHRHLRVVCSSSDKKGVPNSN 60

Query: 61  YVVPLNKSFSEANSSCITRPLAEILRDLNKRIPDNIARKVPESATFIPWFHANRMLSFYA 120
           YVVPLNKSFS ANSSCITRPLAEILRDLNKRIPDNIA+K+PESATFIPWFHANRMLSFYA
Sbjct: 61  YVVPLNKSFSAANSSCITRPLAEILRDLNKRIPDNIAQKLPESATFIPWFHANRMLSFYA 120

Query: 121 PGWCGEIGDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATNGSNEDPVAAAEEIAF 180
           PGWCGEI DVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATNGSNEDPVAAAEEIAF
Sbjct: 121 PGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATNGSNEDPVAAAEEIAF 180

Query: 181 CKACARFGLG 191
           CKACARFGLG
Sbjct: 181 CKACARFGLG 190

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BLAST of Carg08625 vs. NCBI nr
Match: XP_004145544.1 (PREDICTED: uncharacterized protein LOC101203655 [Cucumis sativus] >KGN55506.1 hypothetical protein Csa_4G663650 [Cucumis sativus])

HSP 1 Score: 314.7 bits (805), Expect = 2.4e-82
Identity = 165/198 (83.33%), Postives = 172/198 (86.87%), Query Frame = 0


Query: 4   YAQSQLSGPHLPALSSPLPSSHSVGEVRLPLISTTPKHRHLRVVCSSSD----KKGVPNS 63
           YA SQLSGPHL ALSS L SS+S  E+RLPL STT + RHLR+VCSSSD    KKGVPNS
Sbjct: 6   YAHSQLSGPHLTALSSIL-SSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKGVPNS 65

Query: 64  NYVVPLNKSFSEANSSCITRPLAEILRDLNKRIPDNIARKVPES-------ATFIPWFHA 123
           NYVVPLNKSFS ANSSCITRPLAEILRDLNKRIPDNIA+K P S       ATFIPWFHA
Sbjct: 66  NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIPWFHA 125

Query: 124 NRMLSFYAPGWCGEIGDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATNGSNEDPV 183
           NRMLSFYAPGWCGEI DVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSAT+ + EDPV
Sbjct: 126 NRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPV 185

Query: 184 AAAEEIAFCKACARFGLG 191
           AAAEEIAFCKACARFGLG
Sbjct: 186 AAAEEIAFCKACARFGLG 202

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BLAST of Carg08625 vs. NCBI nr
Match: XP_023522333.1 (DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023522340.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023522347.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.4 bits (781), Expect = 1.5e-79
Identity = 162/197 (82.23%), Postives = 170/197 (86.29%), Query Frame = 0


Query: 4   YAQSQLSGPHLPALSSPLPSSHSVGEVRLPLISTTPKHRHLRVVCSSSD---KKGVPNSN 63
           YA SQL GP LPA S  LPSS+SV E+RLP IST  + RHL +VCSSSD   KKGVPN+N
Sbjct: 6   YAHSQLLGPRLPAFSF-LPSSYSVSEIRLPQISTATR-RHLHLVCSSSDASGKKGVPNTN 65

Query: 64  YVVPLNKSFSEANSSCITRPLAEILRDLNKRIPDNIARKVPES-------ATFIPWFHAN 123
           YVVPLNKSFS ANSSCITRPLAEILRDLNKRIPDNIA KVP+S       ATFIPWFHAN
Sbjct: 66  YVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAPKVPQSDPQNRPPATFIPWFHAN 125

Query: 124 RMLSFYAPGWCGEIGDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATNGSNEDPVA 183
           RMLSFYAPGWCGEI DVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSAT+ + EDPVA
Sbjct: 126 RMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVA 185

Query: 184 AAEEIAFCKACARFGLG 191
           AAEEIAFCKACARFGLG
Sbjct: 186 AAEEIAFCKACARFGLG 200

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BLAST of Carg08625 vs. NCBI nr
Match: XP_008452970.1 (PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo] >XP_016901316.1 PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo])

HSP 1 Score: 304.7 bits (779), Expect = 2.5e-79
Identity = 160/198 (80.81%), Postives = 168/198 (84.85%), Query Frame = 0


Query: 4   YAQSQLSGPHLPALSSPLPSSHSVGEVRLPLISTTPKHRHLRVVCSSSD----KKGVPNS 63
           YA SQL GPH  ALSS + SS+S  E+RLPL STT +  HLR+VCSSSD    KKGVPNS
Sbjct: 6   YAHSQLLGPHPTALSS-IHSSYSTSEIRLPLSSTTSRRPHLRLVCSSSDANSSKKGVPNS 65

Query: 64  NYVVPLNKSFSEANSSCITRPLAEILRDLNKRIPDNIARKVPES-------ATFIPWFHA 123
           NYVVPLNKSFS ANSSCITRPLAEILRDLNKRIPDNIA+K P S        TFIPWFHA
Sbjct: 66  NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIPWFHA 125

Query: 124 NRMLSFYAPGWCGEIGDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATNGSNEDPV 183
           NRMLSFYAPGWCGEI DVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSAT+ + EDPV
Sbjct: 126 NRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPV 185

Query: 184 AAAEEIAFCKACARFGLG 191
           AAAEEIAFCKACARFGLG
Sbjct: 186 AAAEEIAFCKACARFGLG 202

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BLAST of Carg08625 vs. TAIR10
Match: AT5G47870.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 209.1 bits (531), Expect = 2.6e-54
Identity = 113/188 (60.11%), Postives = 136/188 (72.34%), Query Frame = 0


Query: 17  LSSPLPSSHSVGEVRLPLISTTPKHRHLRVVCS--------SSDKKGVPNSNYVVPLNKS 76
           +SSP   S +   ++L    T   +R +R  CS        +  KK VPNSNYVVP++K 
Sbjct: 14  ISSP---STAAARIKLSPFRTVAVNRGVR--CSGGGVGGGDAGKKKAVPNSNYVVPIDKF 73

Query: 77  FSEANSSCITRPLAEILRDLNKRIPDNIARKVPESAT------FIPWFHANRMLSFYAPG 136
              ++SS ITRPL EILRDLNK+IPDNI +     +T      FIPW+HANRMLSFYAPG
Sbjct: 74  ---SSSSSITRPLIEILRDLNKKIPDNIVKSHDPPSTSAATSGFIPWYHANRMLSFYAPG 133

Query: 137 WCGEIGDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATNGSNEDPVAAAEEIAFCK 191
           WCGE+ DVIFS+NG+VTVVYR+T+RGSDGEAHRESTGTV+ T+   EDPV AAEEIAFC+
Sbjct: 134 WCGEVRDVIFSENGNVTVVYRLTIRGSDGEAHRESTGTVTTTDDHIEDPVTAAEEIAFCR 193

[Close]

BLAST of Carg08625 vs. TAIR10
Match: AT1G71310.2 (cobalt ion binding)

HSP 1 Score: 117.5 bits (293), Expect = 1.0e-26
Identity = 62/128 (48.44%), Postives = 85/128 (66.41%), Query Frame = 0


Query: 70  SEANSSCITRPLAEILRDLNKRIPDNIARKVPE---SATFIPWFHANRMLSFYAPGWCGE 129
           ++  +S I+RPLAEIL++LNK++PD++ R   E   S  +IPW   NR+++ +AP W GE
Sbjct: 43  NDVPTSGISRPLAEILKELNKKVPDSVIRTRVEDGCSIKYIPWHIVNRIMNMHAPEWSGE 102

Query: 130 IGDVIFS-DNGSVTVVYRVTVRGSDGEAHRESTGTVSATNGSNEDPVAAAEEIAFCKACA 189
           +  V +S D  +VTV YRVT+ G+D E  RESTGT S  +    D V  AE +AF +ACA
Sbjct: 103 VRSVTYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGYGDAVQKAEAMAFRRACA 162

Query: 190 RFGLGRDL 194
           RFGLG  L
Sbjct: 163 RFGLGLHL 170

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BLAST of Carg08625 vs. Swiss-Prot
Match: sp|Q9FIJ4|RD522_ARATH (DNA repair RAD52-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RAD52-2 PE=1 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 4.7e-53
Identity = 113/188 (60.11%), Postives = 136/188 (72.34%), Query Frame = 0


Query: 17  LSSPLPSSHSVGEVRLPLISTTPKHRHLRVVCS--------SSDKKGVPNSNYVVPLNKS 76
           +SSP   S +   ++L    T   +R +R  CS        +  KK VPNSNYVVP++K 
Sbjct: 14  ISSP---STAAARIKLSPFRTVAVNRGVR--CSGGGVGGGDAGKKKAVPNSNYVVPIDKF 73

Query: 77  FSEANSSCITRPLAEILRDLNKRIPDNIARKVPESAT------FIPWFHANRMLSFYAPG 136
              ++SS ITRPL EILRDLNK+IPDNI +     +T      FIPW+HANRMLSFYAPG
Sbjct: 74  ---SSSSSITRPLIEILRDLNKKIPDNIVKSHDPPSTSAATSGFIPWYHANRMLSFYAPG 133

Query: 137 WCGEIGDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATNGSNEDPVAAAEEIAFCK 191
           WCGE+ DVIFS+NG+VTVVYR+T+RGSDGEAHRESTGTV+ T+   EDPV AAEEIAFC+
Sbjct: 134 WCGEVRDVIFSENGNVTVVYRLTIRGSDGEAHRESTGTVTTTDDHIEDPVTAAEEIAFCR 193

[Close]

BLAST of Carg08625 vs. Swiss-Prot
Match: sp|Q9FVV7|RD521_ARATH (DNA repair RAD52-like protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RAD52-1 PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.8e-25
Identity = 62/128 (48.44%), Postives = 85/128 (66.41%), Query Frame = 0


Query: 70  SEANSSCITRPLAEILRDLNKRIPDNIARKVPE---SATFIPWFHANRMLSFYAPGWCGE 129
           ++  +S I+RPLAEIL++LNK++PD++ R   E   S  +IPW   NR+++ +AP W GE
Sbjct: 43  NDVPTSGISRPLAEILKELNKKVPDSVIRTRVEDGCSIKYIPWHIVNRIMNMHAPEWSGE 102

Query: 130 IGDVIFS-DNGSVTVVYRVTVRGSDGEAHRESTGTVSATNGSNEDPVAAAEEIAFCKACA 189
           +  V +S D  +VTV YRVT+ G+D E  RESTGT S  +    D V  AE +AF +ACA
Sbjct: 103 VRSVTYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGYGDAVQKAEAMAFRRACA 162

Query: 190 RFGLGRDL 194
           RFGLG  L
Sbjct: 163 RFGLGLHL 170

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BLAST of Carg08625 vs. TrEMBL
Match: tr|A0A0A0L5X0|A0A0A0L5X0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G663650 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 1.6e-82
Identity = 165/198 (83.33%), Postives = 172/198 (86.87%), Query Frame = 0


Query: 4   YAQSQLSGPHLPALSSPLPSSHSVGEVRLPLISTTPKHRHLRVVCSSSD----KKGVPNS 63
           YA SQLSGPHL ALSS L SS+S  E+RLPL STT + RHLR+VCSSSD    KKGVPNS
Sbjct: 6   YAHSQLSGPHLTALSSIL-SSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKGVPNS 65

Query: 64  NYVVPLNKSFSEANSSCITRPLAEILRDLNKRIPDNIARKVPES-------ATFIPWFHA 123
           NYVVPLNKSFS ANSSCITRPLAEILRDLNKRIPDNIA+K P S       ATFIPWFHA
Sbjct: 66  NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIPWFHA 125

Query: 124 NRMLSFYAPGWCGEIGDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATNGSNEDPV 183
           NRMLSFYAPGWCGEI DVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSAT+ + EDPV
Sbjct: 126 NRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPV 185

Query: 184 AAAEEIAFCKACARFGLG 191
           AAAEEIAFCKACARFGLG
Sbjct: 186 AAAEEIAFCKACARFGLG 202

[Close]

BLAST of Carg08625 vs. TrEMBL
Match: tr|A0A1S4DZ99|A0A1S4DZ99_CUCME (uncharacterized protein LOC103493818 OS=Cucumis melo OX=3656 GN=LOC103493818 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 1.6e-79
Identity = 160/198 (80.81%), Postives = 168/198 (84.85%), Query Frame = 0


Query: 4   YAQSQLSGPHLPALSSPLPSSHSVGEVRLPLISTTPKHRHLRVVCSSSD----KKGVPNS 63
           YA SQL GPH  ALSS + SS+S  E+RLPL STT +  HLR+VCSSSD    KKGVPNS
Sbjct: 6   YAHSQLLGPHPTALSS-IHSSYSTSEIRLPLSSTTSRRPHLRLVCSSSDANSSKKGVPNS 65

Query: 64  NYVVPLNKSFSEANSSCITRPLAEILRDLNKRIPDNIARKVPES-------ATFIPWFHA 123
           NYVVPLNKSFS ANSSCITRPLAEILRDLNKRIPDNIA+K P S        TFIPWFHA
Sbjct: 66  NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIPWFHA 125

Query: 124 NRMLSFYAPGWCGEIGDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATNGSNEDPV 183
           NRMLSFYAPGWCGEI DVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSAT+ + EDPV
Sbjct: 126 NRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPV 185

Query: 184 AAAEEIAFCKACARFGLG 191
           AAAEEIAFCKACARFGLG
Sbjct: 186 AAAEEIAFCKACARFGLG 202

[Close]

BLAST of Carg08625 vs. TrEMBL
Match: tr|A0A251R0W9|A0A251R0W9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G209900 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.2e-61
Identity = 118/146 (80.82%), Postives = 128/146 (87.67%), Query Frame = 0


Query: 46  VVCSSSDKKGVPNSNYVVPLNKSFSEANSSCITRPLAEILRDLNKRIPDNIARKVP-ESA 105
           + C SS    VPNSNYVVPL+KSFS +NSSCITRPLAEILRDLNKRIPDNI +  P   +
Sbjct: 48  ITCKSSSSSDVPNSNYVVPLDKSFSSSNSSCITRPLAEILRDLNKRIPDNIIQAPPHHHS 107

Query: 106 TFIPWFHANRMLSFYAPGWCGEIGDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSAT 165
           TFIPW+HANRMLSFYAPGWCGEI DVIFSDNGSVTVVYRVT+RGSDGEAHRESTGTVS +
Sbjct: 108 TFIPWYHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTIRGSDGEAHRESTGTVSPS 167

Query: 166 NGSNEDPVAAAEEIAFCKACARFGLG 191
           +G N DPV AAEEIAFC+ACARFGLG
Sbjct: 168 DGRNADPVTAAEEIAFCRACARFGLG 193

[Close]

BLAST of Carg08625 vs. TrEMBL
Match: tr|A0A251R132|A0A251R132_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G209900 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 3.4e-61
Identity = 119/146 (81.51%), Postives = 130/146 (89.04%), Query Frame = 0


Query: 46  VVCSSSDKKGVPNSNYVVPLNKSFSEANSSCITRPLAEILRDLNKRIPDNIARKVP-ESA 105
           + C SS  +GVPNSNYVVPL+KSFS +NSSCITRPLAEILRDLNKRIPDNI +  P   +
Sbjct: 48  ITCKSS--RGVPNSNYVVPLDKSFSSSNSSCITRPLAEILRDLNKRIPDNIIQAPPHHHS 107

Query: 106 TFIPWFHANRMLSFYAPGWCGEIGDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSAT 165
           TFIPW+HANRMLSFYAPGWCGEI DVIFSDNGSVTVVYRVT+RGSDGEAHRESTGTVS +
Sbjct: 108 TFIPWYHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTIRGSDGEAHRESTGTVSPS 167

Query: 166 NGSNEDPVAAAEEIAFCKACARFGLG 191
           +G N DPV AAEEIAFC+ACARFGLG
Sbjct: 168 DGRNADPVTAAEEIAFCRACARFGLG 191

[Close]

BLAST of Carg08625 vs. TrEMBL
Match: tr|M5XSU2|M5XSU2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G209900 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 3.8e-60
Identity = 116/137 (84.67%), Postives = 125/137 (91.24%), Query Frame = 0


Query: 55  GVPNSNYVVPLNKSFSEANSSCITRPLAEILRDLNKRIPDNIARKVP-ESATFIPWFHAN 114
           GVPNSNYVVPL+KSFS +NSSCITRPLAEILRDLNKRIPDNI +  P   +TFIPW+HAN
Sbjct: 64  GVPNSNYVVPLDKSFSSSNSSCITRPLAEILRDLNKRIPDNIIQAPPHHHSTFIPWYHAN 123

Query: 115 RMLSFYAPGWCGEIGDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATNGSNEDPVA 174
           RMLSFYAPGWCGEI DVIFSDNGSVTVVYRVT+RGSDGEAHRESTGTVS ++G N DPV 
Sbjct: 124 RMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTIRGSDGEAHRESTGTVSPSDGRNADPVT 183

Query: 175 AAEEIAFCKACARFGLG 191
           AAEEIAFC+ACARFGLG
Sbjct: 184 AAEEIAFCRACARFGLG 200

The following BLAST results are available for this feature:

BLAST of Carg08625 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536296.1	1.5e-100	97.89	DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_...	[more]
XP_022936923.1	2.2e-99	96.84	DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >XP_02293692...	[more]
XP_004145544.1	2.4e-82	83.33	PREDICTED: uncharacterized protein LOC101203655 [Cucumis sativus] >KGN55506.1 hy...	[more]
XP_023522333.1	1.5e-79	82.23	DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_...	[more]
XP_008452970.1	2.5e-79	80.81	PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo] >XP_016901316.1 P...	[more]

BLAST of Carg08625 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G47870.1	2.6e-54	60.11	FUNCTIONS IN: molecular_function unknown	[more]
AT1G71310.2	1.0e-26	48.44	cobalt ion binding	[more]

BLAST of Carg08625 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FIJ4\|RD522_ARATH	4.7e-53	60.11	DNA repair RAD52-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
sp\|Q9FVV7\|RD521_ARATH	1.8e-25	48.44	DNA repair RAD52-like protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Carg08625 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5X0\|A0A0A0L5X0_CUCSA	1.6e-82	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G663650 PE=4 SV=1	[more]
tr\|A0A1S4DZ99\|A0A1S4DZ99_CUCME	1.6e-79	80.81	uncharacterized protein LOC103493818 OS=Cucumis melo OX=3656 GN=LOC103493818 PE=...	[more]
tr\|A0A251R0W9\|A0A251R0W9_PRUPE	1.2e-61	80.82	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G209900 PE=4 SV=1	[more]
tr\|A0A251R132\|A0A251R132_PRUPE	3.4e-61	81.51	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G209900 PE=4 SV=1	[more]
tr\|M5XSU2\|M5XSU2_PRUPE	3.8e-60	84.67	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G209900 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000724	double-strand break repair via homologous recombination

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR037489	RAD52-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08625-RA	Carg08625-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037489	DNA repair RAD52-like protein	PANTHER	PTHR34050	FAMILY NOT NAMED	coord: 26..191
None	No IPR available	PANTHER	PTHR34050:SF3	SUBFAMILY NOT NAMED	coord: 26..191

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08625	Cla023452	Watermelon (97103) v1	carwmB0104
Carg08625	Csa4G663650	Cucumber (Chinese Long) v2	carcuB0113
Carg08625	MELO3C017029	Melon (DHL92) v3.5.1	carmeB0107
Carg08625	CSPI04G26960	Wild cucumber (PI 183967)	carcpiB0118
Carg08625	Cucsa.272170	Cucumber (Gy14) v1	carcgyB0125
Carg08625	CmaCh01G020170	Cucurbita maxima (Rimu)	carcmaB0136
Carg08625	CmoCh01G020750	Cucurbita moschata (Rifu)	carcmoB0146
Carg08625	Lsi04G018100	Bottle gourd (USVL1VR-Ls)	carlsiB094
Carg08625	Cp4.1LG02g08330	Cucurbita pepo (Zucchini)	carcpeB0153
Carg08625	CsGy4G025290	Cucumber (Gy14) v2	carcgybB0113
Carg08625	MELO3C017029.2	Melon (DHL92) v3.6.1	carmedB0109
Carg08625	CsaV3_4G037320	Cucumber (Chinese Long) v3	carcucB0122
Carg08625	Cla97C11G224870	Watermelon (97103) v2	carwmbB0106
Carg08625	Bhi09G002389	Wax gourd	carwgoB0119

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08625	Carg21369	Silver-seed gourd	carcarB120

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08625	Silver-seed gourd	carcarB122
Carg08625	Cucurbita maxima (Rimu)	carcmaB0134
Carg08625	Cucurbita moschata (Rifu)	carcmoB0144
Carg08625	Cucurbita pepo (Zucchini)	carcpeB0154
Carg08625	Watermelon (Charleston Gray)	carwcgB0102