CsaV3_4G037320 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G037320
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Cobalt ion-binding protein
Location	chr4 : 26180580 .. 26181209 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTCCAAACGTATGCTCATTCCCAGCTCTCAGGACCTCACCTCACTGCCTTATCCTCCATACTCTCTTCCTACTCAACTAGTGAGATTCGACTCCCTCTAACTTCTACTACTTCAAGACGACGCCATCTTCGTCTTGTTTGCTCCAGCAGTGATGCTAATAGTAATAAGAAGGGAGTACCCAATTCCAACTATGTTGTTCCACTTAATAAATCTTTTTCCCCAGCTAACTCATCTTGCATCACTCGACCCCTTGCTGAGATCCTCCGCGATCTAAACAAGAGAATCCCCGATAACATCGCTCAGAAAGCCCCTCATTCTGACACCAATGATCGTTCTCCTGCCACTTTCATCCCTTGGTTTCATGCTAATAGGATGTTGAGTTTCTATGCCCCTGGATGGTGTGGAGAGATACGAGATGTCATATTTTCAGACAATGGTAGTGTAACTGTGGTATATCGTGTGACTGTTCGAGGATCGGATGGAGAAGCACATCGTGAATCGACAGGAACTGTCTCAGCTACTGATAGCAATATTGAGGATCCTGTAGCTGCTGCAGAGGAAATAGCTTTTTGCAAGGCTTGTGCGAGATTTGGCCTCGGTTTGTACCTCTATCATGAAGAATGA

mRNA sequence

ATGGCTCTCCAAACGTATGCTCATTCCCAGCTCTCAGGACCTCACCTCACTGCCTTATCCTCCATACTCTCTTCCTACTCAACTAGTGAGATTCGACTCCCTCTAACTTCTACTACTTCAAGACGACGCCATCTTCGTCTTGTTTGCTCCAGCAGTGATGCTAATAGTAATAAGAAGGGAGTACCCAATTCCAACTATGTTGTTCCACTTAATAAATCTTTTTCCCCAGCTAACTCATCTTGCATCACTCGACCCCTTGCTGAGATCCTCCGCGATCTAAACAAGAGAATCCCCGATAACATCGCTCAGAAAGCCCCTCATTCTGACACCAATGATCGTTCTCCTGCCACTTTCATCCCTTGGTTTCATGCTAATAGGATGTTGAGTTTCTATGCCCCTGGATGGTGTGGAGAGATACGAGATGTCATATTTTCAGACAATGGTAGTGTAACTGTGGTATATCGTGTGACTGTTCGAGGATCGGATGGAGAAGCACATCGTGAATCGACAGGAACTGTCTCAGCTACTGATAGCAATATTGAGGATCCTGTAGCTGCTGCAGAGGAAATAGCTTTTTGCAAGGCTTGTGCGAGATTTGGCCTCGGTTTGTACCTCTATCATGAAGAATGA

Coding sequence (CDS)

ATGGCTCTCCAAACGTATGCTCATTCCCAGCTCTCAGGACCTCACCTCACTGCCTTATCCTCCATACTCTCTTCCTACTCAACTAGTGAGATTCGACTCCCTCTAACTTCTACTACTTCAAGACGACGCCATCTTCGTCTTGTTTGCTCCAGCAGTGATGCTAATAGTAATAAGAAGGGAGTACCCAATTCCAACTATGTTGTTCCACTTAATAAATCTTTTTCCCCAGCTAACTCATCTTGCATCACTCGACCCCTTGCTGAGATCCTCCGCGATCTAAACAAGAGAATCCCCGATAACATCGCTCAGAAAGCCCCTCATTCTGACACCAATGATCGTTCTCCTGCCACTTTCATCCCTTGGTTTCATGCTAATAGGATGTTGAGTTTCTATGCCCCTGGATGGTGTGGAGAGATACGAGATGTCATATTTTCAGACAATGGTAGTGTAACTGTGGTATATCGTGTGACTGTTCGAGGATCGGATGGAGAAGCACATCGTGAATCGACAGGAACTGTCTCAGCTACTGATAGCAATATTGAGGATCCTGTAGCTGCTGCAGAGGAAATAGCTTTTTGCAAGGCTTGTGCGAGATTTGGCCTCGGTTTGTACCTCTATCATGAAGAATGA

Protein sequence

MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKGVPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIPWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKACARFGLGLYLYHEE

Homology

[Close]

BLAST of CsaV3_4G037320 vs. NCBI nr
Match: XP_004145544.1 (PREDICTED: uncharacterized protein LOC101203655 [Cucumis sativus] >KGN55506.1 hypothetical protein Csa_4G663650 [Cucumis sativus])

HSP 1 Score: 417.9 bits (1073), Expect = 2.0e-113
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60
           MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG
Sbjct: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of CsaV3_4G037320 vs. NCBI nr
Match: XP_008452970.1 (PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo] >XP_016901316.1 PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo])

HSP 1 Score: 400.6 bits (1028), Expect = 3.3e-108
Identity = 201/209 (96.17%), Postives = 204/209 (97.61%), Query Frame = 0


Query: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60
           MALQTYAHSQL GPH TALSSI SSYSTSEIRLPL+STTSRR HLRLVCSSSDANS+KKG
Sbjct: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLSSTTSRRPHLRLVCSSSDANSSKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDT+DRSP TFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of CsaV3_4G037320 vs. NCBI nr
Match: XP_022940851.1 (DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >XP_022940852.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >XP_022940853.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 362.5 bits (929), Expect = 1.0e-96
Identity = 186/209 (89.00%), Postives = 190/209 (90.91%), Query Frame = 0


Query: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60
           MALQTYAHSQL GP L A S + SSYS SEIRLP  ST + RRHL LVCSSSDA S KKG
Sbjct: 1   MALQTYAHSQLLGPRLPAFSFLPSSYSVSEIRLPQISTAT-RRHLHLVCSSSDA-SGKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120
           VPN+NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIA K PHSD  +R PATFIP
Sbjct: 61  VPNTNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAPKVPHSDPQNRPPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 207

[Close]

BLAST of CsaV3_4G037320 vs. NCBI nr
Match: XP_023522333.1 (DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023522340.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023522347.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 359.4 bits (921), Expect = 8.4e-96
Identity = 185/209 (88.52%), Postives = 189/209 (90.43%), Query Frame = 0


Query: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60
           MALQTYAHSQL GP L A S + SSYS SEIRLP  ST + RRHL LVCSSSDA S KKG
Sbjct: 1   MALQTYAHSQLLGPRLPAFSFLPSSYSVSEIRLPQISTAT-RRHLHLVCSSSDA-SGKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120
           VPN+NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIA K P SD  +R PATFIP
Sbjct: 61  VPNTNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAPKVPQSDPQNRPPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 207

[Close]

BLAST of CsaV3_4G037320 vs. NCBI nr
Match: XP_022982164.1 (DNA repair RAD52-like protein 2, chloroplastic [Cucurbita maxima] >XP_022982165.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita maxima] >XP_022982166.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 355.1 bits (910), Expect = 1.6e-94
Identity = 182/209 (87.08%), Postives = 188/209 (89.95%), Query Frame = 0


Query: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60
           MALQTYAH QL GP L A S + SSYS SEIRLP  ST + RRHL LVCSSS+A S KKG
Sbjct: 1   MALQTYAHFQLLGPRLPAFSFLPSSYSVSEIRLPQISTAT-RRHLHLVCSSSEA-SGKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120
           VPN+NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIA K P SD  +R PATFIP
Sbjct: 61  VPNTNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAPKVPQSDPQNRPPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSN+
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNV 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 207

[Close]

BLAST of CsaV3_4G037320 vs. TAIR10
Match: AT5G47870.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 232.3 bits (591), Expect = 2.8e-61
Identity = 121/196 (61.73%), Postives = 148/196 (75.51%), Query Frame = 0


Query: 17  TALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDAN----SNKKGVPNSNYVVPLNK 76
           T+ +  +SS ST+  R+ L+   +   +  + CS           KK VPNSNYVVP++K
Sbjct: 8   TSAAFTISSPSTAAARIKLSPFRTVAVNRGVRCSGGGVGGGDAGKKKAVPNSNYVVPIDK 67

Query: 77  SFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIPWFHANRMLSFYA 136
               ++SS ITRPL EILRDLNK+IPDNI  K+    +   + + FIPW+HANRMLSFYA
Sbjct: 68  F---SSSSSITRPLIEILRDLNKKIPDNIV-KSHDPPSTSAATSGFIPWYHANRMLSFYA 127

Query: 137 PGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAF 196
           PGWCGE+RDVIFS+NG+VTVVYR+T+RGSDGEAHRESTGTV+ TD +IEDPV AAEEIAF
Sbjct: 128 PGWCGEVRDVIFSENGNVTVVYRLTIRGSDGEAHRESTGTVTTTDDHIEDPVTAAEEIAF 187

Query: 197 CKACARFGLGLYLYHE 209
           C+ACARFGLGLYLYHE
Sbjct: 188 CRACARFGLGLYLYHE 199

[Close]

BLAST of CsaV3_4G037320 vs. TAIR10
Match: AT1G71310.2 (cobalt ion binding)

HSP 1 Score: 133.3 bits (334), Expect = 1.8e-31
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 0


Query: 79  SSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIPWFHANRMLSFYAPGWCGE 138
           +S I+RPLAEIL++LNK++PD++ +    +   D     +IPW   NR+++ +AP W GE
Sbjct: 47  TSGISRPLAEILKELNKKVPDSVIR----TRVEDGCSIKYIPWHIVNRIMNMHAPEWSGE 106

Query: 139 IRDVIFS-DNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKACA 198
           +R V +S D  +VTV YRVT+ G+D E  RESTGT S  D    D V  AE +AF +ACA
Sbjct: 107 VRSVTYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGYGDAVQKAEAMAFRRACA 166

Query: 199 RFGLGLYLYHEE 210
           RFGLGL+LYHE+
Sbjct: 167 RFGLGLHLYHED 174

[Close]

BLAST of CsaV3_4G037320 vs. Swiss-Prot
Match: sp|Q9FIJ4|RD522_ARATH (DNA repair RAD52-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RAD52-2 PE=1 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 5.1e-60
Identity = 121/196 (61.73%), Postives = 148/196 (75.51%), Query Frame = 0


Query: 17  TALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDAN----SNKKGVPNSNYVVPLNK 76
           T+ +  +SS ST+  R+ L+   +   +  + CS           KK VPNSNYVVP++K
Sbjct: 8   TSAAFTISSPSTAAARIKLSPFRTVAVNRGVRCSGGGVGGGDAGKKKAVPNSNYVVPIDK 67

Query: 77  SFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIPWFHANRMLSFYA 136
               ++SS ITRPL EILRDLNK+IPDNI  K+    +   + + FIPW+HANRMLSFYA
Sbjct: 68  F---SSSSSITRPLIEILRDLNKKIPDNIV-KSHDPPSTSAATSGFIPWYHANRMLSFYA 127

Query: 137 PGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAF 196
           PGWCGE+RDVIFS+NG+VTVVYR+T+RGSDGEAHRESTGTV+ TD +IEDPV AAEEIAF
Sbjct: 128 PGWCGEVRDVIFSENGNVTVVYRLTIRGSDGEAHRESTGTVTTTDDHIEDPVTAAEEIAF 187

Query: 197 CKACARFGLGLYLYHE 209
           C+ACARFGLGLYLYHE
Sbjct: 188 CRACARFGLGLYLYHE 199

[Close]

BLAST of CsaV3_4G037320 vs. Swiss-Prot
Match: sp|Q9FVV7|RD521_ARATH (DNA repair RAD52-like protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RAD52-1 PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.2e-30
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 0


Query: 79  SSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIPWFHANRMLSFYAPGWCGE 138
           +S I+RPLAEIL++LNK++PD++ +    +   D     +IPW   NR+++ +AP W GE
Sbjct: 47  TSGISRPLAEILKELNKKVPDSVIR----TRVEDGCSIKYIPWHIVNRIMNMHAPEWSGE 106

Query: 139 IRDVIFS-DNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKACA 198
           +R V +S D  +VTV YRVT+ G+D E  RESTGT S  D    D V  AE +AF +ACA
Sbjct: 107 VRSVTYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGYGDAVQKAEAMAFRRACA 166

Query: 199 RFGLGLYLYHEE 210
           RFGLGL+LYHE+
Sbjct: 167 RFGLGLHLYHED 174

[Close]

BLAST of CsaV3_4G037320 vs. TrEMBL
Match: tr|A0A0A0L5X0|A0A0A0L5X0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G663650 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 1.3e-113
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60
           MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG
Sbjct: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of CsaV3_4G037320 vs. TrEMBL
Match: tr|A0A1S4DZ99|A0A1S4DZ99_CUCME (uncharacterized protein LOC103493818 OS=Cucumis melo OX=3656 GN=LOC103493818 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 2.2e-108
Identity = 201/209 (96.17%), Postives = 204/209 (97.61%), Query Frame = 0


Query: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60
           MALQTYAHSQL GPH TALSSI SSYSTSEIRLPL+STTSRR HLRLVCSSSDANS+KKG
Sbjct: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLSSTTSRRPHLRLVCSSSDANSSKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDT+DRSP TFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of CsaV3_4G037320 vs. TrEMBL
Match: tr|A0A2I4FC08|A0A2I4FC08_9ROSI (uncharacterized protein LOC108997396 OS=Juglans regia OX=51240 GN=LOC108997396 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 5.4e-67
Identity = 134/180 (74.44%), Postives = 145/180 (80.56%), Query Frame = 0


Query: 41  RRRHLRLVCSSSD----ANSN-------KKGVPNSNYVVPLNKSFSPANSSCITRPLAEI 100
           RR  L+LV  + D    +NS+       K GVPNSNYVVPL+KSFSP NSSCITRPL EI
Sbjct: 48  RRDSLKLVVCALDRTNGSNSSGGGDGVKKGGVPNSNYVVPLDKSFSPTNSSCITRPLVEI 107

Query: 101 LRDLNKRIPDNIAQKAPHSDTNDRSPATFIPWFHANRMLSFYAPGWCGEIRDVIFSDNGS 160
           LRDLNKRIPDNI +       +    ATFIPWFHANRMLSFYAPGWCGEIRDVIF+DNGS
Sbjct: 108 LRDLNKRIPDNIIKNTSPPHDDHAETATFIPWFHANRMLSFYAPGWCGEIRDVIFADNGS 167

Query: 161 VTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           VTVVYRVT+RGSDGEAHRESTGTVS  D +I DPVAAAEEIAFC+ACARFGLGLYLYHEE
Sbjct: 168 VTVVYRVTIRGSDGEAHRESTGTVSPVDGHILDPVAAAEEIAFCRACARFGLGLYLYHEE 227

[Close]

BLAST of CsaV3_4G037320 vs. TrEMBL
Match: tr|A0A251R0W9|A0A251R0W9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G209900 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 4.6e-66
Identity = 128/168 (76.19%), Postives = 139/168 (82.74%), Query Frame = 0


Query: 42  RRHLRLVCSSSDANSNKKGVPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNI 101
           RR    VC  +  +S+   VPNSNYVVPL+KSFS +NSSCITRPLAEILRDLNKRIPDNI
Sbjct: 39  RRRAGGVCMITCKSSSSSDVPNSNYVVPLDKSFSSSNSSCITRPLAEILRDLNKRIPDNI 98

Query: 102 AQKAPHSDTNDRSPATFIPWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGS 161
            Q  PH        +TFIPW+HANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVT+RGS
Sbjct: 99  IQAPPHHH------STFIPWYHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTIRGS 158

Query: 162 DGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           DGEAHRESTGTVS +D    DPV AAEEIAFC+ACARFGLGLYLYHE+
Sbjct: 159 DGEAHRESTGTVSPSDGRNADPVTAAEEIAFCRACARFGLGLYLYHED 200

[Close]

BLAST of CsaV3_4G037320 vs. TrEMBL
Match: tr|A0A0B0PCR4|A0A0B0PCR4_GOSAR (Leucine--tRNA ligase OS=Gossypium arboreum OX=29729 GN=F383_30234 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 4.6e-66
Identity = 125/167 (74.85%), Postives = 146/167 (87.43%), Query Frame = 0


Query: 46  RLVCSSSDANSN---KKGVPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIA 105
           RL CSS++ NSN   KKGVP+SNYVVPL KSFSP+NSSCITRPL EILRDLNKRIP NI 
Sbjct: 40  RLHCSSNNNNSNCDAKKGVPDSNYVVPLEKSFSPSNSSCITRPLIEILRDLNKRIPHNII 99

Query: 106 QKAPHSDTNDRSPATFIPWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSD 165
           +  P+S       +TF+PW+HANRMLSFYAPGWCGE+RDVIF++NG++TVVYR+T+RGSD
Sbjct: 100 KSPPNS-------STFLPWYHANRMLSFYAPGWCGEVRDVIFANNGTITVVYRLTIRGSD 159

Query: 166 GEAHRESTGTVSATDSNIEDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           GEAHRESTGTVS++  N+ DPV+AAEEIAFC+ACARFGLGLYLYHEE
Sbjct: 160 GEAHRESTGTVSSSKINMVDPVSAAEEIAFCRACARFGLGLYLYHEE 199

The following BLAST results are available for this feature:

BLAST of CsaV3_4G037320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145544.1	2.0e-113	100.00	PREDICTED: uncharacterized protein LOC101203655 [Cucumis sativus] >KGN55506.1 hy...	[more]
XP_008452970.1	3.3e-108	96.17	PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo] >XP_016901316.1 P...	[more]
XP_022940851.1	1.0e-96	89.00	DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >XP_02294085...	[more]
XP_023522333.1	8.4e-96	88.52	DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_...	[more]
XP_022982164.1	1.6e-94	87.08	DNA repair RAD52-like protein 2, chloroplastic [Cucurbita maxima] >XP_022982165....	[more]

BLAST of CsaV3_4G037320 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G47870.1	2.8e-61	61.73	FUNCTIONS IN: molecular_function unknown	[more]
AT1G71310.2	1.8e-31	50.00	cobalt ion binding	[more]

BLAST of CsaV3_4G037320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FIJ4\|RD522_ARATH	5.1e-60	61.73	DNA repair RAD52-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
sp\|Q9FVV7\|RD521_ARATH	3.2e-30	50.00	DNA repair RAD52-like protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of CsaV3_4G037320 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5X0\|A0A0A0L5X0_CUCSA	1.3e-113	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G663650 PE=4 SV=1	[more]
tr\|A0A1S4DZ99\|A0A1S4DZ99_CUCME	2.2e-108	96.17	uncharacterized protein LOC103493818 OS=Cucumis melo OX=3656 GN=LOC103493818 PE=...	[more]
tr\|A0A2I4FC08\|A0A2I4FC08_9ROSI	5.4e-67	74.44	uncharacterized protein LOC108997396 OS=Juglans regia OX=51240 GN=LOC108997396 P...	[more]
tr\|A0A251R0W9\|A0A251R0W9_PRUPE	4.6e-66	76.19	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G209900 PE=4 SV=1	[more]
tr\|A0A0B0PCR4\|A0A0B0PCR4_GOSAR	4.6e-66	74.85	Leucine--tRNA ligase OS=Gossypium arboreum OX=29729 GN=F383_30234 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000724	double-strand break repair via homologous recombination

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR037489	RAD52-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016874	ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G037320.1	CsaV3_4G037320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037489	DNA repair RAD52-like protein	PANTHER	PTHR34050	FAMILY NOT NAMED	coord: 27..209
None	No IPR available	PANTHER	PTHR34050:SF3	SUBFAMILY NOT NAMED	coord: 27..209

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G037320	CSPI04G26960	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G037320	Cucsa.272170	Cucumber (Gy14) v1	cgycucB415
CsaV3_4G037320	CmaCh09G000490	Cucurbita maxima (Rimu)	cmacucB0031
CsaV3_4G037320	CmaCh01G020170	Cucurbita maxima (Rimu)	cmacucB0554
CsaV3_4G037320	CmoCh09G000520	Cucurbita moschata (Rifu)	cmocucB0020
CsaV3_4G037320	CmoCh01G020750	Cucurbita moschata (Rifu)	cmocucB0540
CsaV3_4G037320	Cp4.1LG02g08330	Cucurbita pepo (Zucchini)	cpecucB0709
CsaV3_4G037320	Cp4.1LG06g00340	Cucurbita pepo (Zucchini)	cpecucB0974
CsaV3_4G037320	CsGy4G025290	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G037320	Carg08625	Silver-seed gourd	carcucB0122
CsaV3_4G037320	Carg21369	Silver-seed gourd	carcucB0392
CsaV3_4G037320	Cla023452	Watermelon (97103) v1	cucwmB368
CsaV3_4G037320	MELO3C017029	Melon (DHL92) v3.5.1	cucmeB316
CsaV3_4G037320	Lsi04G018100	Bottle gourd (USVL1VR-Ls)	cuclsiB305
CsaV3_4G037320	MELO3C017029.2	Melon (DHL92) v3.6.1	cucmedB308
CsaV3_4G037320	Cla97C11G224870	Watermelon (97103) v2	cucwmbB282
CsaV3_4G037320	Bhi09G002389	Wax gourd	cucwgoB426

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G037320	Cucumber (Chinese Long) v3	cuccucB187
CsaV3_4G037320	Cucurbita pepo (Zucchini)	cpecucB0310
CsaV3_4G037320	Watermelon (Charleston Gray)	cucwcgB289