CmaCh09G000490 (gene) Cucurbita maxima (Rimu)

NameCmaCh09G000490
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionHigh mobility group B protein 2
LocationCma_Chr09 : 211689 .. 214846 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTATCTATGCCCATTCCCAGCTCTCAGGGCCCCACCTCCCTGCATTATCATCCCCCCTTCCCTCTTCCCACTCTGTTAGTGAGATTCGACTCCCTCTAATCTCTACCACTTCAAAACACCGCCATCTTCGTGTTGTCTGCTCCAGCAGTGATGGTAGTGGTAGCAAGAAGGGAGTACCCAGTTCCAACTATGTTGTGCCGCTCAATAAATCATTTTCCGCAGCTAACTCATCCTGAATCACCCGACCCCTTGCCGAGATCCTCCGGGATCTAAACAAGAGAATCCCCGATAACATTGCCCAGAAACTTCCTCAATCCGCTACTTTCATCCCTTGGTTTCATGCCAATAGAATGCTGAGTTTCTACGCCCCTGGATGGTGTGGAGAAATACGAGACGTTATATTCTCCCACAATGGAAGCGTGACTGTAAGAGGATCTGATGGAGAGGCACACCGTGAATCGACTGGAACAGTATCAGCCACCAATAGCAGTAATGAAGATCCTGTAGCTGCTGCAGAGGAAATAGCTTTTTGCAAGGCTTGTGCAAGATTTGGGCTCGGTTTGTATCTGTACCATGAAGAATGAATGAATGCCATGCTTATGCTTCCAACATGTATTGAATTGAAGTTATTTTGTAGAAATGGGTATAATGTTGTTGGCCTTCAACTTTAGAAACCTCATTTCTGTGGTGAATTAAAGTTACAATTGTTTACTTTTGTTGTGCACGTGCATCTCGTGTGTCCATATTCAAACTTTTATTTTTTATTTTATTATTATTATTTTTTTTTTTTTTGGGTCTATTTTTAAGACCGAGATTTGTTAATACGGGCTTTACTTTGGGCTTCTATTGGGCTTTGTTTTCAAGCCCGAGATTTGTTGATACGGGCTTTTCTTTGGGCTTCTATTGGGCTTTGTTTTAAATGGCGAAATCTGATAAGACGGGCCTTCGGAGATGCTCTTTGCCGTGCGGGTGGCGGGAGTCGCACCGCCAACGAATATTAGGAAAGAAAACAAACACAAAGCGGCGGAGAGATGGGGAAGGGCAAAAAATAATCTAATGACGTGGACCAATGAAATAGGAGTGCGGAGATTATTGAGGTGGCAATAAATTTAGAATCCCGCCTAAATCCCTGCTTTCATTTCCTGGGCAATTGAATTTCCAATTTGCCCTTCTCAGGGGCATAATTATCCCTTTTTTTCTCTCAAAACTCTCTCCACCCTCGTATCCCTTCTCTCCTTCTATCTCAAACGCAGGTCCGCTTCTTCCTCCCTCTTCAAACCCTAAACCTAACCTATCCTCCCTCCGGAGCTCTCTTCCTTCGGTACGTTACATTGATCTCCTTCGATTTCTCACGTAATTTCACGTCTTTTGTTTGTTTCCTCTCGAGATTGTTGCTGATCCGATCGTATACTGCAGGATTCGAAATGAAAGGCGGAAAATCGAAGTCGGAGTCGAAGAAAGCAGACACCAAGTAAGTTTTTTTTTCTTCCTCCGTGCTTTTTCTGTCGTATATGTTTATGTTTTAGTTTTGATCGGCCCTAGATCTATAAAGCCTCATTGTTGTGAATTACCTGTCCCAAAGCTAGGCGTTGACCTCTTTCTTTCTTTCTGATTGATCGTTGTCTATGGGTTTTCCCCCCAAAAATTGTAGGCTTGCAGTGAAGAAAGGTGCAGCCAACGCGGGCAAAAAAGGAAGTAAGAAGGCAGCGAAAGATCCTAACAAGCCCAAGAGGCCCGCCAGTGCCTTCTTCGTTTTTATGTAATTTTTTAATCTTTTAATTTACATTTCGAATTCTGGATTATTCTGCCTACATTCAATTTATTTAATTTTCATGGTTGTGAAGTTTTAGAAAAAAATGTCAACAAGGACAGATTAACGATGAACTTGATTTCCACGATTTTTTATTGGGGTATCGAACATTTGTAGCTAACAGTATTCAAGTTCGTCTCAAATACCTTACGGAAACATAAGCGAATGTTAACACAGCTTGGCTCTCTACAAAAGAGATTCCTTTGATTTGTTGTGTCTATTTGCTTTAGAACCTTTTTTTTTTTTGCAGTTGTTTTCTTCCTGTAAATCGTCGAGTACGTATATAATCATTGTGTTGTCATGTTGTTGCATTTTTTGATAATTAAAGGGAAGAGTTCAGGAAGAAGTTCAATGAGGAGAATCCGAATAACAAAGCAGTGTCTGCTGTAAGCTATTTAGCTATCTAATAGTCGCTCTTTTAGTTGTTGACTCCATTCCAACTTTTATGGCTCTTTGTTGAAATGATCGATGATACCTACAAATGATGTAATCAGGTTGGTAAAGCTGCTGGACAGAAATGGAAATCGATGTCAGAAGCTGTATGTGATAGCTATCGTAGTATTTCTTATACTTCTCCTGGTATTATAAACTCTGTCTGAATTACTGTTTATAATATCAGGATAAAGCACCTTACGTTGCCAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAGTTATGAAGGCCTATAACAAGAAACAGGTATATCCTCTTGTTAAAGCTTATGAAGCATTTATATTTCCGCACTGTTTTTCTTATTTGAATTGAATTCACTCCCCTTGTGAGTTTCAGGCCAGTGGAGCCAATGCTGCAGAAGAAGATGAATCTGAGAAATCAGTGTCTGAGGTGAATGATGATGAGGAAGGAGATGAGGGCAGCGAAGAGGTAATCCTTTTTATGGAGTTTATTTAAATTAGACATTATAGTGGTAATGTTTGAGCCCTAAATTAATTTTATTTTATTTTTCTTTATTTTTACAGGAGGACGATGACGACGAGTGATGAAGATGTAGATGATAGCAACGTCATTTAGGCTCTCAGTGTACTTGATCTTTCCATAATAATGGTCTGATCATTTCCTGTTAATTGGTTTTGTTATTATCATGAAAATATTTTAGCATCTCCCTGTTATTTTGTTTGTGCATTCAGTAACGGAAGGTTGTATTGGGAGATCATCTGTCTTGTACCTTACAATGTTAGTTATCCAATCCAACTATCTTTTTTTTCCCTTATGTTTCTCTGAGATAGCAAGAACACTCCTCTTCACACCATGTGATAAGATGAAGATTCAATCAAATCCACCCACTAAATCTGTATTACAGTTAACAGACAATCTCTGAATTCCAG

mRNA sequence

ATGGTTATCTATGCCCATTCCCAGCTCTCAGGGCCCCACCTCCCTGCATTATCATCCCCCCTTCCCTCTTCCCACTCTGTTAGTGAGATTCGACTCCCTCTAATCTCTACCACTTCAAAACACCGCCATCTTCGTGTTGTCTGCTCCAGCAGTGATGGTAGTGGTAGCAAGAAGGGAATCCTCCGGGATCTAAACAAGAGAATCCCCGATAACATTGCCCAGAAACTTCCTCAATCCGCTACTTTCATCCCTTGGTTTCATGCCAATAGAATGCTGAGTTTCTACGCCCCTGGATGGTGTGGAGAAATACGAGACGTTATATTCTCCCACAATGGAAGCGTGACTGTAAGAGGATCTGATGGAGAGGCACACCGTGAATCGACTGGAACAGTATCAGCCACCAATAGCAGTAATGAAGATCCTGTAGCTGCTGCAGAGGAAATAGCTTTTTGCAAGGCTTGTGCAAGATTTGGGCTCGGATTCGAAATGAAAGGCGGAAAATCGAAGTCGGAGTCGAAGAAAGCAGACACCAAGCTTGCAGTGAAGAAAGGTGCAGCCAACGCGGGCAAAAAAGGAAGTAAGAAGGCAGCGAAAGATCCTAACAAGCCCAAGAGGCCCGCCAGTGCCTTCTTCGTTTTTATGGAAGAGTTCAGGAAGAAGTTCAATGAGGAGAATCCGAATAACAAAGCAGTGTCTGCTGTTGGTAAAGCTGCTGGACAGAAATGGAAATCGATGTCAGAAGCTGATAAAGCACCTTACGTTGCCAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAGTTATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCAGAAGAAGATGAATCTGAGAAATCAGTGTCTGAGGTGAATGATGATGAGGAAGGAGATGAGGGCAGCGAAGAGGAGGACGATGACGACGAGTGATGAAGATGTAGATGATAGCAACGTCATTTAGGCTCTCAGTGTACTTGATCTTTCCATAATAATGGTCTGATCATTTCCTGTTAATTGGTTTTGTTATTATCATGAAAATATTTTAGCATCTCCCTGTTATTTTGTTTGTGCATTCAGTAACGGAAGGTTGTATTGGGAGATCATCTGTCTTGTACCTTACAATGTTAGTTATCCAATCCAACTATCTTTTTTTTCCCTTATGTTTCTCTGAGATAGCAAGAACACTCCTCTTCACACCATGTGATAAGATGAAGATTCAATCAAATCCACCCACTAAATCTGTATTACAGTTAACAGACAATCTCTGAATTCCAG

Coding sequence (CDS)

ATGGTTATCTATGCCCATTCCCAGCTCTCAGGGCCCCACCTCCCTGCATTATCATCCCCCCTTCCCTCTTCCCACTCTGTTAGTGAGATTCGACTCCCTCTAATCTCTACCACTTCAAAACACCGCCATCTTCGTGTTGTCTGCTCCAGCAGTGATGGTAGTGGTAGCAAGAAGGGAATCCTCCGGGATCTAAACAAGAGAATCCCCGATAACATTGCCCAGAAACTTCCTCAATCCGCTACTTTCATCCCTTGGTTTCATGCCAATAGAATGCTGAGTTTCTACGCCCCTGGATGGTGTGGAGAAATACGAGACGTTATATTCTCCCACAATGGAAGCGTGACTGTAAGAGGATCTGATGGAGAGGCACACCGTGAATCGACTGGAACAGTATCAGCCACCAATAGCAGTAATGAAGATCCTGTAGCTGCTGCAGAGGAAATAGCTTTTTGCAAGGCTTGTGCAAGATTTGGGCTCGGATTCGAAATGAAAGGCGGAAAATCGAAGTCGGAGTCGAAGAAAGCAGACACCAAGCTTGCAGTGAAGAAAGGTGCAGCCAACGCGGGCAAAAAAGGAAGTAAGAAGGCAGCGAAAGATCCTAACAAGCCCAAGAGGCCCGCCAGTGCCTTCTTCGTTTTTATGGAAGAGTTCAGGAAGAAGTTCAATGAGGAGAATCCGAATAACAAAGCAGTGTCTGCTGTTGGTAAAGCTGCTGGACAGAAATGGAAATCGATGTCAGAAGCTGATAAAGCACCTTACGTTGCCAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAGTTATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCAGAAGAAGATGAATCTGAGAAATCAGTGTCTGAGGTGAATGATGATGAGGAAGGAGATGAGGGCAGCGAAGAGGAGGACGATGACGACGAGTGA

Protein sequence

MVIYAHSQLSGPHLPALSSPLPSSHSVSEIRLPLISTTSKHRHLRVVCSSSDGSGSKKGILRDLNKRIPDNIAQKLPQSATFIPWFHANRMLSFYAPGWCGEIRDVIFSHNGSVTVRGSDGEAHRESTGTVSATNSSNEDPVAAAEEIAFCKACARFGLGFEMKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAAEEDESEKSVSEVNDDEEGDEGSEEEDDDDE
BLAST of CmaCh09G000490 vs. Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.2e-46
Identity = 113/152 (74.34%), Postives = 131/152 (86.18%), Query Frame = 1

Query: 163 MKGGKSKSESKKADTKLAV-KKGAANAGKK--GSKKAAKDPNKPKRPASAFFVFMEEFRK 222
           MKGGKSK+ESK+AD KLAV KKGAA   +K  G  KAAKDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 223 KFNEENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGA 282
            FN+E+P NKAVSAVGKAAG KWK+MS+A+KAPYVAK++KRKVEYEK M+AYNKKQA G 
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 283 NAAEEDESEKSVSEVNDDEEGDEGSEEEDDDD 312
              +E+ESEKSVSEVND+++ +EGS EE+DDD
Sbjct: 121 TGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

BLAST of CmaCh09G000490 vs. Swiss-Prot
Match: HMGB3_ARATH (High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 4.7e-38
Identity = 98/149 (65.77%), Postives = 123/149 (82.55%), Query Frame = 1

Query: 163 MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 222
           MKG KSK+E++   TKL+V K  A    KG+K AAKDPNKPKRP+SAFFVFME+FR  + 
Sbjct: 1   MKGAKSKAETRS--TKLSVTKKPA----KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYK 60

Query: 223 EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 282
           EE+P NK+V+AVGKA G+KWKS+S+++KAPYVAKADKRKVEYEK MKAYNKK   G    
Sbjct: 61  EEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK-- 120

Query: 283 EEDESEKSVSEVNDDEEGDEGSEEEDDDD 312
           E++ES+KSVSEVND+++ ++GSEEE+DDD
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEEDDD 141

BLAST of CmaCh09G000490 vs. Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.8e-37
Identity = 96/150 (64.00%), Postives = 123/150 (82.00%), Query Frame = 1

Query: 163 MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 222
           MKGGKSK+   K+D KLAVKK AA+  K  +KKA KDPNKPKRP SAFFVFME+FRK + 
Sbjct: 1   MKGGKSKA---KSDNKLAVKKQAADTKK--TKKAVKDPNKPKRPPSAFFVFMEDFRKTYK 60

Query: 223 EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 282
           E++PNNK+V+ VGKA G KWK ++ A+KAP+++KA+KRK EYEK ++AYNKKQA+G  AA
Sbjct: 61  EKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AA 120

Query: 283 EEDESEKSVSEVNDDEEGDEGSEEEDDDDE 313
           EE+ES+KS SEVNDD+E  +GS E+D +D+
Sbjct: 121 EEEESDKSRSEVNDDDEDQDGSGEDDSEDD 143

BLAST of CmaCh09G000490 vs. Swiss-Prot
Match: HMGB2_ARATH (High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.8e-37
Identity = 96/149 (64.43%), Postives = 122/149 (81.88%), Query Frame = 1

Query: 163 MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 222
           MKG KSK+E++ +  KL+V K  A    +G K AAKDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETRSS--KLSVTKKPAKGAGRG-KAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 223 EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 282
           +ENP NK+V+ VGKAAG KWKS+S+++KAPYVAKA+KRKVEYEK +KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 283 EEDESEKSVSEVNDDEEGDEGSEEEDDDD 312
           E++ES+KSVSEVND+++ ++GSEEE+DDD
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEEDDD 144

BLAST of CmaCh09G000490 vs. Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.3e-35
Identity = 99/159 (62.26%), Postives = 120/159 (75.47%), Query Frame = 1

Query: 163 MKGGKSKSESKKADTKLAVKKGAANAGKKGSK-KAAKDPNKPKRPASAFFVFMEEFRKKF 222
           MKG KSK  +K AD KLAVK   A    KG K KA KDPNKPKR  SAFFVFMEEFRK+F
Sbjct: 1   MKGAKSKGAAK-ADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEF 60

Query: 223 NEENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANA 282
            E+NP NK+V+AVGKAAG +WKS+SE+DKAPYVAKA+K K+EY K + AYNK +++ A  
Sbjct: 61  KEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKK 120

Query: 283 A--------EEDESEKSVSEVNDDEEGDEGSEEEDDDDE 313
           A        +E+ES+KS SEVN DE+ +EGSEE++DDDE
Sbjct: 121 APAKEEEEEDEEESDKSKSEVN-DEDDEEGSEEDEDDDE 157

BLAST of CmaCh09G000490 vs. TrEMBL
Match: A0A0A0L5X0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G663650 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 6.1e-61
Identity = 138/198 (69.70%), Postives = 145/198 (73.23%), Query Frame = 1

Query: 4   YAHSQLSGPHLPALSSPLPSSHSVSEIRLPLISTTSKHRHLRVVCSSSDGSGSKKG---- 63
           YAHSQLSGPHL ALSS L SS+S SEIRLPL STTS+ RHLR+VCSSSD + +KKG    
Sbjct: 6   YAHSQLSGPHLTALSSIL-SSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKGVPNS 65

Query: 64  ------------------------ILRDLNKRIPDNIAQKLPQS-------ATFIPWFHA 123
                                   ILRDLNKRIPDNIAQK P S       ATFIPWFHA
Sbjct: 66  NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIPWFHA 125

Query: 124 NRMLSFYAPGWCGEIRDVIFSHNGS------VTVRGSDGEAHRESTGTVSATNSSNEDPV 161
           NRMLSFYAPGWCGEIRDVIFS NGS      VTVRGSDGEAHRESTGTVSAT+S+ EDPV
Sbjct: 126 NRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPV 185

BLAST of CmaCh09G000490 vs. TrEMBL
Match: W9RJ53_9ROSA (High mobility group B protein 2 OS=Morus notabilis GN=L484_024862 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.8e-45
Identity = 114/150 (76.00%), Postives = 129/150 (86.00%), Query Frame = 1

Query: 163 MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 222
           MKG  +KS +KKADTKLAV K +   G+   KKA KDPNKPKRPASAFFVFMEEFRK+FN
Sbjct: 1   MKG--AKSNTKKADTKLAVNKKSTKVGR--GKKAVKDPNKPKRPASAFFVFMEEFRKQFN 60

Query: 223 EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 282
           +ENPNNKAVSAVGKAAG KWKSMSEADKAPYVAKA+KRKVEYEK MKAYNK+QA G NAA
Sbjct: 61  KENPNNKAVSAVGKAAGAKWKSMSEADKAPYVAKAEKRKVEYEKNMKAYNKRQAEGVNAA 120

Query: 283 EEDESEKSVSEVNDDEEGDEGSEEEDDDDE 313
           +++ S+KS+SEVNDD+EGDE    EDDD+E
Sbjct: 121 DDEGSDKSLSEVNDDDEGDEDGSGEDDDEE 146

BLAST of CmaCh09G000490 vs. TrEMBL
Match: V7AQT2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G012000g PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.8e-45
Identity = 113/152 (74.34%), Postives = 133/152 (87.50%), Query Frame = 1

Query: 163 MKGGKSKSESKKADTKLAV-KKGAANAGKK--GSKKAAKDPNKPKRPASAFFVFMEEFRK 222
           MKGGKSK+ESK+AD KLAV KKGAA   +K  G  KAAKDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADAKLAVNKKGAATKSRKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 223 KFNEENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGA 282
           +FN+E+P+NKAVSAVGKAAG KWK+MS+ADKAP+V K++KRKVEYEK M+AYNKKQA G 
Sbjct: 61  QFNKEHPDNKAVSAVGKAAGAKWKTMSDADKAPFVVKSEKRKVEYEKSMRAYNKKQAEGP 120

Query: 283 NAAEEDESEKSVSEVNDDEEGDEGSEEEDDDD 312
            A +E+ESEKSVSEVND+++ +EGS EE+DDD
Sbjct: 121 TAGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

BLAST of CmaCh09G000490 vs. TrEMBL
Match: A0A151RZ15_CAJCA (HMG1/2-like protein OS=Cajanus cajan GN=KK1_030553 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.2e-45
Identity = 111/147 (75.51%), Postives = 128/147 (87.07%), Query Frame = 1

Query: 163 MKGGKSKSESKKADTKLAV-KKGAANAGKK--GSKKAAKDPNKPKRPASAFFVFMEEFRK 222
           MKGGKSK+ESK+AD KLAV KKGAA   +K  G  KAAKDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 223 KFNEENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGA 282
           +FN+ENP+NKAVSAVGKAAG KWKSMS+A+KAPYVAK++KRKVEYEK M+AYNKKQA G 
Sbjct: 61  QFNKENPDNKAVSAVGKAAGAKWKSMSDAEKAPYVAKSEKRKVEYEKSMRAYNKKQAEGP 120

Query: 283 NAAEEDESEKSVSEVNDDEEGDEGSEE 307
              +E+ESEKSVSEVND+++ +EGS E
Sbjct: 121 TGGDEEESEKSVSEVNDEDDDEEGSGE 147

BLAST of CmaCh09G000490 vs. TrEMBL
Match: I1JSU3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G016800 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44
Identity = 113/152 (74.34%), Postives = 132/152 (86.84%), Query Frame = 1

Query: 163 MKGGKSKSESKKADTKLAV-KKGAANAGKK--GSKKAAKDPNKPKRPASAFFVFMEEFRK 222
           MKGGKSK+ESK+AD KLAV KKGAA   +K  G  KAAKDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADAKLAVNKKGAATKTRKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 223 KFNEENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGA 282
            FN+E+P+NKAVSAVGKAAG KWK+MS+A+KAPYVAK++KRKVEYEK M+AYNKKQA G 
Sbjct: 61  VFNKEHPDNKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 283 NAAEEDESEKSVSEVNDDEEGDEGSEEEDDDD 312
              +E+ESEKSVSEVND+++ +EGS EE+DDD
Sbjct: 121 TGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

BLAST of CmaCh09G000490 vs. TAIR10
Match: AT5G47870.1 (AT5G47870.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 159.8 bits (403), Expect = 2.6e-39
Identity = 80/113 (70.80%), Postives = 89/113 (78.76%), Query Frame = 1

Query: 60  ILRDLNKRIPDNIAQKLPQSAT------FIPWFHANRMLSFYAPGWCGEIRDVIFSHNGS 119
           ILRDLNK+IPDNI +     +T      FIPW+HANRMLSFYAPGWCGE+RDVIFS NG+
Sbjct: 81  ILRDLNKKIPDNIVKSHDPPSTSAATSGFIPWYHANRMLSFYAPGWCGEVRDVIFSENGN 140

Query: 120 VTV------RGSDGEAHRESTGTVSATNSSNEDPVAAAEEIAFCKACARFGLG 161
           VTV      RGSDGEAHRESTGTV+ T+   EDPV AAEEIAFC+ACARFGLG
Sbjct: 141 VTVVYRLTIRGSDGEAHRESTGTVTTTDDHIEDPVTAAEEIAFCRACARFGLG 193

BLAST of CmaCh09G000490 vs. TAIR10
Match: AT1G20693.1 (AT1G20693.1 high mobility group B2)

HSP 1 Score: 156.0 bits (393), Expect = 3.8e-38
Identity = 96/149 (64.43%), Postives = 122/149 (81.88%), Query Frame = 1

Query: 163 MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 222
           MKG KSK+E++ +  KL+V K  A    +G K AAKDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETRSS--KLSVTKKPAKGAGRG-KAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 223 EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 282
           +ENP NK+V+ VGKAAG KWKS+S+++KAPYVAKA+KRKVEYEK +KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 283 EEDESEKSVSEVNDDEEGDEGSEEEDDDD 312
           E++ES+KSVSEVND+++ ++GSEEE+DDD
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEEDDD 144

BLAST of CmaCh09G000490 vs. TAIR10
Match: AT1G20696.2 (AT1G20696.2 high mobility group B3)

HSP 1 Score: 140.2 bits (352), Expect = 2.2e-33
Identity = 78/112 (69.64%), Postives = 94/112 (83.93%), Query Frame = 1

Query: 163 MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 222
           MKG KSK+E++   TKL+V K  A    KG+K AAKDPNKPKRP+SAFFVFME+FR  + 
Sbjct: 1   MKGAKSKAETRS--TKLSVTKKPA----KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYK 60

Query: 223 EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKK 275
           EE+P NK+V+AVGKA G+KWKS+S+++KAPYVAKADKRKVEYEK MKAYNKK
Sbjct: 61  EEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKK 106

BLAST of CmaCh09G000490 vs. TAIR10
Match: AT2G17560.1 (AT2G17560.1 high mobility group B4)

HSP 1 Score: 131.3 bits (329), Expect = 1.0e-30
Identity = 84/150 (56.00%), Postives = 109/150 (72.67%), Query Frame = 1

Query: 163 MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 222
           MKGG+SK+E+   D +L  +      G+K  KK  KDPN+PKRP SAFFVF+E+FRK+FN
Sbjct: 1   MKGGESKAEATSTDQRLKTR------GRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFN 60

Query: 223 EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 282
             NPNNK+V+ VGKAAG +WK+M++ DKAPYVAKA+ RK EY K ++ YN K ASG N  
Sbjct: 61  LANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTN-R 120

Query: 283 EEDESEKSVSEVNDDEEGDEGSEEEDDDDE 313
           EED+S+KS SEV+     +  SEEE +DD+
Sbjct: 121 EEDDSDKSKSEVD-----EAVSEEEAEDDD 138

BLAST of CmaCh09G000490 vs. TAIR10
Match: AT3G51880.2 (AT3G51880.2 high mobility group B1)

HSP 1 Score: 119.0 bits (297), Expect = 5.2e-27
Identity = 88/171 (51.46%), Postives = 106/171 (61.99%), Query Frame = 1

Query: 162 EMKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKF 221
           + K GK K+ ++K  TK   +K          KKA KDPNKPKR  SAFFVF+E+FR  F
Sbjct: 22  DRKVGKRKAPAEKP-TKRETRK---------EKKAKKDPNKPKRAPSAFFVFLEDFRVTF 81

Query: 222 NEENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANA 281
            +ENPN KAVSAVGKA GQKWKSMS+A+KAPY  KA KRK EYEK M AYNK    G+  
Sbjct: 82  KKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGS-- 141

Query: 282 AEEDESEKSVSEVNDDEE--------------------GDEGSEEEDDDDE 313
              DESEKS SE+ND++E                    GD+  EEE++DD+
Sbjct: 142 ---DESEKSRSEINDEDEASGEVTIPLSNEELLEKEAAGDDEEEEEEEDDD 177

BLAST of CmaCh09G000490 vs. NCBI nr
Match: gi|449455607|ref|XP_004145544.1| (PREDICTED: uncharacterized protein LOC101203655 [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 8.8e-61
Identity = 138/198 (69.70%), Postives = 145/198 (73.23%), Query Frame = 1

Query: 4   YAHSQLSGPHLPALSSPLPSSHSVSEIRLPLISTTSKHRHLRVVCSSSDGSGSKKG---- 63
           YAHSQLSGPHL ALSS L SS+S SEIRLPL STTS+ RHLR+VCSSSD + +KKG    
Sbjct: 6   YAHSQLSGPHLTALSSIL-SSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKGVPNS 65

Query: 64  ------------------------ILRDLNKRIPDNIAQKLPQS-------ATFIPWFHA 123
                                   ILRDLNKRIPDNIAQK P S       ATFIPWFHA
Sbjct: 66  NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIPWFHA 125

Query: 124 NRMLSFYAPGWCGEIRDVIFSHNGS------VTVRGSDGEAHRESTGTVSATNSSNEDPV 161
           NRMLSFYAPGWCGEIRDVIFS NGS      VTVRGSDGEAHRESTGTVSAT+S+ EDPV
Sbjct: 126 NRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPV 185

BLAST of CmaCh09G000490 vs. NCBI nr
Match: gi|659104775|ref|XP_008452973.1| (PREDICTED: HMG1/2-like protein isoform X1 [Cucumis melo])

HSP 1 Score: 240.7 bits (613), Expect = 3.3e-60
Identity = 138/149 (92.62%), Postives = 145/149 (97.32%), Query Frame = 1

Query: 163 MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 222
           MKGGKSKSESKKADTKLAVKKGAA  GKKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAA--GKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 223 EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 282
           EENPNNKAVSAVGKAAGQKWKSMS+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 283 EEDESEKSVSEVNDDEEGDEGSEEEDDDD 312
           +EDESEKS+SEVNDDE+GDEGSEEEDDD+
Sbjct: 121 DEDESEKSMSEVNDDEDGDEGSEEEDDDE 147

BLAST of CmaCh09G000490 vs. NCBI nr
Match: gi|659104777|ref|XP_008452974.1| (PREDICTED: HMG1/2-like protein isoform X2 [Cucumis melo])

HSP 1 Score: 238.4 bits (607), Expect = 1.7e-59
Identity = 136/148 (91.89%), Postives = 144/148 (97.30%), Query Frame = 1

Query: 163 MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 222
           MKGGKSKSESKKADTKLAVKKGAA  GKKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAA--GKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 223 EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 282
           EENPNNKAVSAVGKAAGQKWKSMS+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 283 EEDESEKSVSEVNDDEEGDEGSEEEDDD 311
           +EDESEKS+SEVNDDE+GDEGSEE+DD+
Sbjct: 121 DEDESEKSMSEVNDDEDGDEGSEEDDDE 146

BLAST of CmaCh09G000490 vs. NCBI nr
Match: gi|449455609|ref|XP_004145545.1| (PREDICTED: HMG1/2-like protein [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 8.2e-59
Identity = 135/148 (91.22%), Postives = 143/148 (96.62%), Query Frame = 1

Query: 163 MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 222
           MKGGKS+SESKKADTKLAVKKGAA   KKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSRSESKKADTKLAVKKGAA--AKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 223 EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 282
           EENPNNKAVSAVGKAAGQKWKSMS+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 283 EEDESEKSVSEVNDDEEGDEGSEEEDDD 311
           EEDESEKS+SEVNDDE+GDEGSEE+DD+
Sbjct: 121 EEDESEKSMSEVNDDEDGDEGSEEDDDE 146

BLAST of CmaCh09G000490 vs. NCBI nr
Match: gi|659104708|ref|XP_008452970.1| (PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo])

HSP 1 Score: 233.8 bits (595), Expect = 4.1e-58
Identity = 134/198 (67.68%), Postives = 141/198 (71.21%), Query Frame = 1

Query: 4   YAHSQLSGPHLPALSSPLPSSHSVSEIRLPLISTTSKHRHLRVVCSSSDGSGSKKG---- 63
           YAHSQL GPH  ALSS + SS+S SEIRLPL STTS+  HLR+VCSSSD + SKKG    
Sbjct: 6   YAHSQLLGPHPTALSS-IHSSYSTSEIRLPLSSTTSRRPHLRLVCSSSDANSSKKGVPNS 65

Query: 64  ------------------------ILRDLNKRIPDNIAQKLPQS-------ATFIPWFHA 123
                                   ILRDLNKRIPDNIAQK P S        TFIPWFHA
Sbjct: 66  NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIPWFHA 125

Query: 124 NRMLSFYAPGWCGEIRDVIFSHNGS------VTVRGSDGEAHRESTGTVSATNSSNEDPV 161
           NRMLSFYAPGWCGEIRDVIFS NGS      VTVRGSDGEAHRESTGTVSAT+S+ EDPV
Sbjct: 126 NRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPV 185

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
HMGL_SOYBN1.2e-4674.34HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGB3_ARATH4.7e-3865.77High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3 PE=1 SV=1[more]
HMGL_IPONI6.8e-3764.00HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGB2_ARATH6.8e-3764.43High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2 PE=1 SV=1[more]
MNB1B_MAIZE8.3e-3562.26DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L5X0_CUCSA6.1e-6169.70Uncharacterized protein OS=Cucumis sativus GN=Csa_4G663650 PE=4 SV=1[more]
W9RJ53_9ROSA2.8e-4576.00High mobility group B protein 2 OS=Morus notabilis GN=L484_024862 PE=4 SV=1[more]
V7AQT2_PHAVU2.8e-4574.34Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G012000g PE=4 SV=1[more]
A0A151RZ15_CAJCA6.2e-4575.51HMG1/2-like protein OS=Cajanus cajan GN=KK1_030553 PE=4 SV=1[more]
I1JSU3_SOYBN1.4e-4474.34Uncharacterized protein OS=Glycine max GN=GLYMA_04G016800 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G47870.12.6e-3970.80 FUNCTIONS IN: molecular_function unknown[more]
AT1G20693.13.8e-3864.43 high mobility group B2[more]
AT1G20696.22.2e-3369.64 high mobility group B3[more]
AT2G17560.11.0e-3056.00 high mobility group B4[more]
AT3G51880.25.2e-2751.46 high mobility group B1[more]
Match NameE-valueIdentityDescription
gi|449455607|ref|XP_004145544.1|8.8e-6169.70PREDICTED: uncharacterized protein LOC101203655 [Cucumis sativus][more]
gi|659104775|ref|XP_008452973.1|3.3e-6092.62PREDICTED: HMG1/2-like protein isoform X1 [Cucumis melo][more]
gi|659104777|ref|XP_008452974.1|1.7e-5991.89PREDICTED: HMG1/2-like protein isoform X2 [Cucumis melo][more]
gi|449455609|ref|XP_004145545.1|8.2e-5991.22PREDICTED: HMG1/2-like protein [Cucumis sativus][more]
gi|659104708|ref|XP_008452970.1|4.1e-5867.68PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000724 double-strand break repair via homologous recombination
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0016874 ligase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G000490.1CmaCh09G000490.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainGENE3DG3DSA:1.10.30.10coord: 201..275
score: 1.1
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 203..272
score: 1.8
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 202..273
score: 1.0
IPR009071High mobility group box domainPROFILEPS50118HMG_BOX_2coord: 203..272
score: 20
IPR009071High mobility group box domainunknownSSF47095HMG-boxcoord: 190..276
score: 1.57
NoneNo IPR availableunknownCoilCoilcoord: 254..274
scor
NoneNo IPR availablePANTHERPTHR34050FAMILY NOT NAMEDcoord: 60..160
score: 3.1
NoneNo IPR availablePANTHERPTHR34050:SF3SUBFAMILY NOT NAMEDcoord: 60..160
score: 3.1