ClCG11G018780 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG11G018780
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	High mobility group protein
Location	CG_Chr11 : 31962833 .. 31964991 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCGTGCGCAATTGAATTTCAATTTGCCCTCCTTAGACGAGACTTAATTAATTATCCCTTTTTACTCTCACAGCTCCTTCTCCTCCTACCCCTTCCTTCTTTCTCTCTCACACGCACCTCCGCTTCTTCCTCCCTCTTCAAACCCTAAACCTAACCTAACCCAACCTCCTCCCGTCGGTACGTTTCATCGATCTCCTCCGTCTTTTCGACTAATTTCTCGCAATTTTGCGTCTTTTGTTTGTTTCCCCTCCAAATTGTTGCTGATCCGATCGTATACTGCAGGATTCGAAATGAAAGGCGGTAAATCGAAGACGGAGTCGAAGAAAGCAGACACCAAGTGAGTTTTTTTTTTTCTTTTTTGTTTCTTCCGTGTTTTTTCTGTCGTATATGTTTATTTATTTATTTATTTATGGTTTTGATCGGCCCTAGATCTAAGAAGTTTCATTGTTTTGAATTACCTGTCAAAAAGTTAGGCGTTGACCTTTTTTTTTCCCTATCTTATTGATCGCTTTTGGTGAATTTTTCTTTTTTAAATTGTAGGCTTGCAGTGAAAAAAGGTGCAGCCAACGCGGGCAAGAAAGGAAGTAAGAAGGCAGGGAAAGATCCTAACAAACCCAAGAGGCCTGCCAGTGCCTTCTTCGTTTTTATGTAATTTTTTTAATCTTTTGATTTGACGATCTGAATTATTCTTAGTTGTCTGCAAATTACGGGAGTTGGATGGTTGTAGAGTTGAGCAAAATGTATGCAAGTACAGAATAACGATATCCAAATTCATTAGAAATGCCTTTGGGAATTATAAGTGAAAGTTAAAACCGCTTGGCTTTCTACAAAAGAGATTCCTTTTGTTTTGTTGTGTCTATTTGGCTTATAGACCCCTGGTTTTTGCAGTAGTTTTCTTTATGTAAGCCGATTATCATCTAACTTCATTGTTGTTACGTTGTTGCATTTGTTTTATTATCAAAGGGAAGAGTTCAGGAAGAAATTCAATGAGGAGAATCCTAATAACAAAGCAGTGTCTGCTGTAAGCTATTTAGCTTCTTCCAAGTTGCTCTTTTAGTTTTTGTTTCCATTTCAATTTATATGACTCCTTTGAGGAAATGAGCGAAGTTATTGACTTACAAATTGATGCGATCAGGTTGGTAAAGCTGCTGGACAGAAATGGAAATCAATGTCGGATGCTGTACGTGATAGATATCATAGTATTTCTTATACTTCTCCTGGTATTATAAACTCTCTCTGAATTACTGTTTATAATATCAGGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAAATATGAAGGCCTATAACAAGAAACAGGTACATACTCTTGGTAAAGTTCCTCTAGCATTTCAATTGCAGCTCTATTTTCTTATTTGAATTGAATTCTCATTCACTGTGTGAGTTCAGGCCAGTGGAGCCAATGCTGCGGAAGAAGATGAATCTGAGAAGTCAATGTCTGAGGTGAATGATGATGAAGACGGAGATGAGGGCAGCGAAGAGGTTAGCTTCCTTCAGGAGTTTAGTTAAACTAGTCATTAGAGAGCTAATGTTGTAGCTGTACGCTCATTTCATTTTCTTCCTTCTGATTTTGCAGGAGGACGATGACGAGTGATGAAGATGTAGATGATAGTAATGTCATTTAGGCTGTCAGTGTACTTGATCTTTCCATAATATTGGTCTGATCATTTCCTGTTAATTGGTTTTTTATATCATGAAAATATATTAGTATCTCCCTGTTATTTTGTTTGTGCATTCAGTAACGATGAAGGGTTGTAATGGGGGATCATCTGTCTTGTACCTTACAATGTTAGTTATTCCAATCCAACTGTTTTTTTAAACTTTTCAACTGAGATAACAAGAACATTCCACTTCACACATCGTGTGACAAGATGAAGATTCAATCAAACCCACGCACTAAATGATTGCAGTTTCCAATCAAGCTCAGTTGGCCACTTTTTAACAGAGATCTCTCTTTTAATAACTCCAGTGCTTGTGTTTTTATATGTATTTAGGTATGGCCTCTTAATGGTTATTTGTAGGCCACTCTTTTATGTGTGAACTTGGAGAATTGGGAGCTAAATTTGATCAGTGCTCGTTTGTCTGCTGCTCTTCTATCTCTGAATTATTTTCATTG

mRNA sequence

TTTCGTGCGCAATTGAATTTCAATTTGCCCTCCTTAGACGAGACTTAATTAATTATCCCTTTTTACTCTCACAGCTCCTTCTCCTCCTACCCCTTCCTTCTTTCTCTCTCACACGCACCTCCGCTTCTTCCTCCCTCTTCAAACCCTAAACCTAACCTAACCCAACCTCCTCCCGTCGGATTCGAAATGAAAGGCGGTAAATCGAAGACGGAGTCGAAGAAAGCAGACACCAAGCTTGCAGTGAAAAAAGGTGCAGCCAACGCGGGCAAGAAAGGAAGTAAGAAGGCAGGGAAAGATCCTAACAAACCCAAGAGGCCTGCCAGTGCCTTCTTCGTTTTTATGGAAGAGTTCAGGAAGAAATTCAATGAGGAGAATCCTAATAACAAAGCAGTGTCTGCTGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAAATATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCGGAAGAAGATGAATCTGAGAAGTCAATGTCTGAGGTGAATGATGATGAAGACGGAGATGAGGGCAGCGAAGAGGAGGACGATGACGAGTGATGAAGATGTAGATGATAGTAATGTCATTTAGGCTGTCAGTGTACTTGATCTTTCCATAATATTGGTCTGATCATTTCCTGTTAATTGGTTTTTTATATCATGAAAATATATTAGTATCTCCCTGTTATTTTGTTTGTGCATTCAGTAACGATGAAGGGTTGTAATGGGGGATCATCTGTCTTGTACCTTACAATGTTAGTTATTCCAATCCAACTGTTTTTTTAAACTTTTCAACTGAGATAACAAGAACATTCCACTTCACACATCGTGTGACAAGATGAAGATTCAATCAAACCCACGCACTAAATGATTGCAGTTTCCAATCAAGCTCAGTTGGCCACTTTTTAACAGAGATCTCTCTTTTAATAACTCCAGTGCTTGTGTTTTTATATGTATTTAGGTATGGCCTCTTAATGGTTATTTGTAGGCCACTCTTTTATGTGTGAACTTGGAGAATTGGGAGCTAAATTTGATCAGTGCTCGTTTGTCTGCTGCTCTTCTATCTCTGAATTATTTTCATTG

Coding sequence (CDS)

ATGAAAGGCGGTAAATCGAAGACGGAGTCGAAGAAAGCAGACACCAAGCTTGCAGTGAAAAAAGGTGCAGCCAACGCGGGCAAGAAAGGAAGTAAGAAGGCAGGGAAAGATCCTAACAAACCCAAGAGGCCTGCCAGTGCCTTCTTCGTTTTTATGGAAGAGTTCAGGAAGAAATTCAATGAGGAGAATCCTAATAACAAAGCAGTGTCTGCTGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAAATATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCGGAAGAAGATGAATCTGAGAAGTCAATGTCTGAGGTGAATGATGATGAAGACGGAGATGAGGGCAGCGAAGAGGAGGACGATGACGAGTGA

Protein sequence

MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEEEDDDE

Homology

[Close]

BLAST of ClCG11G018780 vs. Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 6.2e-48
Identity = 101/152 (66.45%), Postives = 115/152 (75.66%), Query Frame = 1


Query: 1   MKGGKSKTESKKADTKLAV-KKGAANAGKK--GSKKAGKDPNKPKRPASAFFVFMEEFRK 60
           MKGGKSKTESK+AD KLAV KKGAA   +K  G  KA KDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 61  KFNEENPNNKAVSA---------------EKAPYIAKADKRKVEYEKNMKAYNKKQASGA 120
            FN+E+P NKAVSA               EKAPY+AK++KRKVEYEKNM+AYNKKQA G 
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 121 NAAEEDESEKSMSEVNDDEDGDEGSEEEDDDE 135
              +E+ESEKS+SEVND++D +EGS EE+DD+
Sbjct: 121 TGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

[Close]

BLAST of ClCG11G018780 vs. Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.4e-39
Identity = 89/149 (59.73%), Postives = 110/149 (73.83%), Query Frame = 1


Query: 1   MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSK    K+D KLAVKK AA+  K  +KKA KDPNKPKRP SAFFVFME+FRK + 
Sbjct: 1   MKGGKSKA---KSDNKLAVKKQAADTKK--TKKAVKDPNKPKRPPSAFFVFMEDFRKTYK 60

Query: 61  EENPNNKAVS---------------AEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           E++PNNK+V+               AEKAP+I+KA+KRK EYEKN++AYNKKQA+G  AA
Sbjct: 61  EKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 135
           EE+ES+KS SEVNDD++  +GS E+D ++
Sbjct: 121 EEEESDKSRSEVNDDDEDQDGSGEDDSED 142

[Close]

BLAST of ClCG11G018780 vs. Swiss-Prot
Match: HMGB3_ARATH (High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 9.0e-39
Identity = 87/149 (58.39%), Postives = 106/149 (71.14%), Query Frame = 1


Query: 1   MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKG KSK E++   TKL+V K  A    KG+K A KDPNKPKRP+SAFFVFME+FR  + 
Sbjct: 1   MKGAKSKAETRS--TKLSVTKKPA----KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYK 60

Query: 61  EENPNNKAVSA---------------EKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EE+P NK+V+A               EKAPY+AKADKRKVEYEKNMKAYNKK   G    
Sbjct: 61  EEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK-- 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 135
           E++ES+KS+SEVND++D ++GSEEE+DD+
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEEDDD 141

[Close]

BLAST of ClCG11G018780 vs. Swiss-Prot
Match: HMGB2_ARATH (High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.5e-38
Identity = 85/149 (57.05%), Postives = 107/149 (71.81%), Query Frame = 1


Query: 1   MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKG KSKTE++ +  KL+V K  A    +G K A KDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETRSS--KLSVTKKPAKGAGRG-KAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 61  EENPNNKAVS---------------AEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           +ENP NK+V+               +EKAPY+AKA+KRKVEYEKN+KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 135
           E++ES+KS+SEVND++D ++GSEEE+DD+
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of ClCG11G018780 vs. Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-34
Identity = 86/158 (54.43%), Postives = 104/158 (65.82%), Query Frame = 1


Query: 1   MKGGKSKTESKKADTKLAVKKGAANAGKKGSK-KAGKDPNKPKRPASAFFVFMEEFRKKF 60
           MKG KSK  +K AD KLAVK   A    KG K KAGKDPNKPKR  SAFFVFMEEFRK+F
Sbjct: 1   MKGAKSKGAAK-ADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEF 60

Query: 61  NEENPNNKAVSA---------------EKAPYIAKADKRKVEYEKNMKAYNKKQASGANA 120
            E+NP NK+V+A               +KAPY+AKA+K K+EY K + AYNK +++ A  
Sbjct: 61  KEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKK 120

Query: 121 A--------EEDESEKSMSEVNDDEDGDEGSEEEDDDE 135
           A        +E+ES+KS SEVN DED +EGSEE++DD+
Sbjct: 121 APAKEEEEEDEEESDKSKSEVN-DEDDEEGSEEDEDDD 156

[Close]

BLAST of ClCG11G018780 vs. TrEMBL
Match: D7UDB2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g01190 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 5.3e-46
Identity = 103/153 (67.32%), Postives = 120/153 (78.43%), Query Frame = 1


Query: 1   MKGGKSKTESKKADTKLAVKKGAA--NAGKKGSK-KAGKDPNKPKRPASAFFVFMEEFRK 60
           MKGG+SK+++KKAD KL+VKKGAA   AGKK  K K  KDPNKPKRPASAFFVFMEEFRK
Sbjct: 1   MKGGRSKSDTKKADAKLSVKKGAAATKAGKKTKKEKPVKDPNKPKRPASAFFVFMEEFRK 60

Query: 61  KFNEENPNNKAVS---------------AEKAPYIAKADKRKVEYEKNMKAYNKKQASGA 120
           ++ E++P+NK+VS               AEKAPY+AKA+KRKVEYEKNMKAYNKKQA G 
Sbjct: 61  QYKEKHPSNKSVSVVGKAGGDKWKSMSEAEKAPYVAKAEKRKVEYEKNMKAYNKKQAEGT 120

Query: 121 NAA-EEDESEKSMSEVNDDEDGDEGSEEEDDDE 135
               EEDESEKS+SEVND ED ++GSEEE+DDE
Sbjct: 121 KVVEEEDESEKSLSEVNDQEDDEDGSEEEEDDE 153

[Close]

BLAST of ClCG11G018780 vs. TrEMBL
Match: A0A0B2QK17_GLYSO (HMG1/2-like protein OS=Glycine soja GN=glysoja_014685 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 7.0e-46
Identity = 101/152 (66.45%), Postives = 117/152 (76.97%), Query Frame = 1


Query: 1   MKGGKSKTESKKADTKLAV-KKGAANAGKK--GSKKAGKDPNKPKRPASAFFVFMEEFRK 60
           MKGGKSKTESK+AD KLAV KKGAA   +K  G  KA KDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 61  KFNEENPNNKAVSA---------------EKAPYIAKADKRKVEYEKNMKAYNKKQASGA 120
            FN+E+P NKAVSA               EKAPY+AK++KRKVEYEKNM+AYNKKQA G 
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 121 NAAEEDESEKSMSEVNDDEDGDEGSEEEDDDE 135
              +E+ESEKS+SEVND++D +EGS EE+DD+
Sbjct: 121 TGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

[Close]

BLAST of ClCG11G018780 vs. TrEMBL
Match: A0A0R0JGZ3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G017100 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 7.0e-46
Identity = 101/152 (66.45%), Postives = 117/152 (76.97%), Query Frame = 1


Query: 1   MKGGKSKTESKKADTKLAV-KKGAANAGKK--GSKKAGKDPNKPKRPASAFFVFMEEFRK 60
           MKGGKSKTESK+AD KLAV KKGAA   +K  G  KA KDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 61  KFNEENPNNKAVSA---------------EKAPYIAKADKRKVEYEKNMKAYNKKQASGA 120
            FN+E+P NKAVSA               EKAPY+AK++KRKVEYEKNM+AYNKKQA G 
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 121 NAAEEDESEKSMSEVNDDEDGDEGSEEEDDDE 135
              +E+ESEKS+SEVND++D +EGS EE+DD+
Sbjct: 121 TGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

[Close]

BLAST of ClCG11G018780 vs. TrEMBL
Match: I1JSU3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G016800 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 7.0e-46
Identity = 101/152 (66.45%), Postives = 118/152 (77.63%), Query Frame = 1


Query: 1   MKGGKSKTESKKADTKLAV-KKGAANAGKK--GSKKAGKDPNKPKRPASAFFVFMEEFRK 60
           MKGGKSKTESK+AD KLAV KKGAA   +K  G  KA KDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADAKLAVNKKGAATKTRKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 61  KFNEENPNNKAVSA---------------EKAPYIAKADKRKVEYEKNMKAYNKKQASGA 120
            FN+E+P+NKAVSA               EKAPY+AK++KRKVEYEKNM+AYNKKQA G 
Sbjct: 61  VFNKEHPDNKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 121 NAAEEDESEKSMSEVNDDEDGDEGSEEEDDDE 135
              +E+ESEKS+SEVND++D +EGS EE+DD+
Sbjct: 121 TGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

[Close]

BLAST of ClCG11G018780 vs. TrEMBL
Match: A0A0B2RND4_GLYSO (HMG1/2-like protein OS=Glycine soja GN=glysoja_013800 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 7.0e-46
Identity = 101/152 (66.45%), Postives = 118/152 (77.63%), Query Frame = 1


Query: 1   MKGGKSKTESKKADTKLAV-KKGAANAGKK--GSKKAGKDPNKPKRPASAFFVFMEEFRK 60
           MKGGKSKTESK+AD KLAV KKGAA   +K  G  KA KDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADAKLAVNKKGAATKTRKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 61  KFNEENPNNKAVSA---------------EKAPYIAKADKRKVEYEKNMKAYNKKQASGA 120
            FN+E+P+NKAVSA               EKAPY+AK++KRKVEYEKNM+AYNKKQA G 
Sbjct: 61  VFNKEHPDNKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 121 NAAEEDESEKSMSEVNDDEDGDEGSEEEDDDE 135
              +E+ESEKS+SEVND++D +EGS EE+DD+
Sbjct: 121 TGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

[Close]

BLAST of ClCG11G018780 vs. TAIR10
Match: AT1G20693.1 (AT1G20693.1 high mobility group B2)

HSP 1 Score: 160.2 bits (404), Expect = 8.7e-40
Identity = 85/149 (57.05%), Postives = 107/149 (71.81%), Query Frame = 1


Query: 1   MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKG KSKTE++ +  KL+V K  A    +G K A KDPNKPKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETRSS--KLSVTKKPAKGAGRG-KAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 61  EENPNNKAVS---------------AEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           +ENP NK+V+               +EKAPY+AKA+KRKVEYEKN+KAYNKK   G    
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK-- 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 135
           E++ES+KS+SEVND++D ++GSEEE+DD+
Sbjct: 121 EDEESDKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of ClCG11G018780 vs. TAIR10
Match: AT2G17560.1 (AT2G17560.1 high mobility group B4)

HSP 1 Score: 131.3 bits (329), Expect = 4.3e-31
Identity = 74/147 (50.34%), Postives = 91/147 (61.90%), Query Frame = 1


Query: 1   MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGG+SK E+   D +L  +      G+K  KK  KDPN+PKRP SAFFVF+E+FRK+FN
Sbjct: 1   MKGGESKAEATSTDQRLKTR------GRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFN 60

Query: 61  EENPNNKAVSA---------------EKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
             NPNNK+V+                +KAPY+AKA+ RK EY KN++ YN K ASG N  
Sbjct: 61  LANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTN-R 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDD 133
           EED+S+KS SEV  DE   E   E+DD
Sbjct: 121 EEDDSDKSKSEV--DEAVSEEEAEDDD 138

[Close]

BLAST of ClCG11G018780 vs. TAIR10
Match: AT1G20696.2 (AT1G20696.2 high mobility group B3)

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-28
Identity = 68/112 (60.71%), Postives = 77/112 (68.75%), Query Frame = 1


Query: 1   MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKG KSK E++   TKL+V K  A    KG+K A KDPNKPKRP+SAFFVFME+FR  + 
Sbjct: 1   MKGAKSKAETRS--TKLSVTKKPA----KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYK 60

Query: 61  EENPNNKAVSA---------------EKAPYIAKADKRKVEYEKNMKAYNKK 98
           EE+P NK+V+A               EKAPY+AKADKRKVEYEKNMKAYNKK
Sbjct: 61  EEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKK 106

[Close]

BLAST of ClCG11G018780 vs. TAIR10
Match: AT3G51880.2 (AT3G51880.2 high mobility group B1)

HSP 1 Score: 113.6 bits (283), Expect = 9.3e-26
Identity = 77/178 (43.26%), Postives = 88/178 (49.44%), Query Frame = 1


Query: 4   GKSKTESKKA------DTKLAVKKGAANAGKKGS----KKAGKDPNKPKRPASAFFVFME 63
           GK K ++ K       D K+  +K  A    K      KKA KDPNKPKR  SAFFVF+E
Sbjct: 6   GKDKVKTTKEALKPVDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLE 65

Query: 64  EFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKVEYEKNMKAYNKKQ 123
           +FR  F +ENPN KAVS               AEKAPY  KA KRK EYEK M AYNK  
Sbjct: 66  DFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNL 125

Query: 124 ASGANAAEEDESEKSMSEVNDDE----------------------DGDEGSEEEDDDE 135
             G+     DESEKS SE+ND++                      D +E  EEEDDD+
Sbjct: 126 EEGS-----DESEKSRSEINDEDEASGEVTIPLSNEELLEKEAAGDDEEEEEEEDDDD 178

[Close]

BLAST of ClCG11G018780 vs. TAIR10
Match: AT4G35570.1 (AT4G35570.1 high mobility group B5)

HSP 1 Score: 90.9 bits (224), Expect = 6.5e-19
Identity = 48/131 (36.64%), Postives = 73/131 (55.73%), Query Frame = 1


Query: 1   MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MK  +++ ES+  D +L V+      G K  KK  KDPN+PK+P S FFVF+++FRK+FN
Sbjct: 1   MKDNQTEVESRSTDDRLKVR------GNKVGKKT-KDPNRPKKPPSPFFVFLDDFRKEFN 60

Query: 61  EENPNNKAV---------------SAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 117
             NP+NK+V                 E+AP++AK+  +K EY   M+ YN + A+G    
Sbjct: 61  LANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQYNMELANGNKTT 120

[Close]

BLAST of ClCG11G018780 vs. NCBI nr
Match: gi|659104775|ref|XP_008452973.1| (PREDICTED: HMG1/2-like protein isoform X1 [Cucumis melo])

HSP 1 Score: 247.3 bits (630), Expect = 1.5e-62
Identity = 130/149 (87.25%), Postives = 132/149 (88.59%), Query Frame = 1


Query: 1   MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSK+ESKKADTKLAVKKGAA  GKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAA--GKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSA---------------EKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSA               EKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 135
           +EDESEKSMSEVNDDEDGDEGSEEEDDDE
Sbjct: 121 DEDESEKSMSEVNDDEDGDEGSEEEDDDE 147

[Close]

BLAST of ClCG11G018780 vs. NCBI nr
Match: gi|659104777|ref|XP_008452974.1| (PREDICTED: HMG1/2-like protein isoform X2 [Cucumis melo])

HSP 1 Score: 242.7 bits (618), Expect = 3.8e-61
Identity = 127/148 (85.81%), Postives = 131/148 (88.51%), Query Frame = 1


Query: 1   MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSK+ESKKADTKLAVKKGAA  GKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAA--GKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSA---------------EKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSA               EKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDD 134
           +EDESEKSMSEVNDDEDGDEGSEE+DD+
Sbjct: 121 DEDESEKSMSEVNDDEDGDEGSEEDDDE 146

[Close]

BLAST of ClCG11G018780 vs. NCBI nr
Match: gi|449455609|ref|XP_004145545.1| (PREDICTED: HMG1/2-like protein [Cucumis sativus])

HSP 1 Score: 240.4 bits (612), Expect = 1.9e-60
Identity = 126/148 (85.14%), Postives = 130/148 (87.84%), Query Frame = 1


Query: 1   MKGGKSKTESKKADTKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKS++ESKKADTKLAVKKGAA   KKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSRSESKKADTKLAVKKGAA--AKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSA---------------EKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSA               EKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDD 134
           EEDESEKSMSEVNDDEDGDEGSEE+DD+
Sbjct: 121 EEDESEKSMSEVNDDEDGDEGSEEDDDE 146

[Close]

BLAST of ClCG11G018780 vs. NCBI nr
Match: gi|1009133731|ref|XP_015884062.1| (PREDICTED: HMG1/2-like protein [Ziziphus jujuba])

HSP 1 Score: 195.7 bits (496), Expect = 5.3e-47
Identity = 111/152 (73.03%), Postives = 122/152 (80.26%), Query Frame = 1


Query: 1   MKGGKSKTESKKADTKLAVKKGAAN-AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKF 60
           MKGGKS   SKKADTKL+VK GA   AG+K SKKA KDPNKPKRPASAFFVFMEEFRK+F
Sbjct: 1   MKGGKSN--SKKADTKLSVKGGATTKAGRKSSKKA-KDPNKPKRPASAFFVFMEEFRKQF 60

Query: 61  NEENPNNKAVSA---------------EKAPYIAKADKRKVEYEKNMKAYNKKQASGANA 120
           N+ENP NKAVSA               EKAPY+AKA+KRKVEYEKNMKAYNK+QA G NA
Sbjct: 61  NKENPENKAVSAVGKAAGAKWKSMSDAEKAPYVAKAEKRKVEYEKNMKAYNKRQAEGPNA 120

Query: 121 AEEDE-SEKSMSEVNDDEDG-DEGSEEEDDDE 135
           AEE+E SEKSMSEVND+++G DEGS EEDDDE
Sbjct: 121 AEEEEGSEKSMSEVNDEDEGDDEGSGEEDDDE 149

[Close]

BLAST of ClCG11G018780 vs. NCBI nr
Match: gi|225457566|ref|XP_002272299.1| (PREDICTED: HMG1/2-like protein [Vitis vinifera])

HSP 1 Score: 191.8 bits (486), Expect = 7.6e-46
Identity = 103/153 (67.32%), Postives = 120/153 (78.43%), Query Frame = 1


Query: 1   MKGGKSKTESKKADTKLAVKKGAA--NAGKKGSK-KAGKDPNKPKRPASAFFVFMEEFRK 60
           MKGG+SK+++KKAD KL+VKKGAA   AGKK  K K  KDPNKPKRPASAFFVFMEEFRK
Sbjct: 1   MKGGRSKSDTKKADAKLSVKKGAAATKAGKKTKKEKPVKDPNKPKRPASAFFVFMEEFRK 60

Query: 61  KFNEENPNNKAVS---------------AEKAPYIAKADKRKVEYEKNMKAYNKKQASGA 120
           ++ E++P+NK+VS               AEKAPY+AKA+KRKVEYEKNMKAYNKKQA G 
Sbjct: 61  QYKEKHPSNKSVSVVGKAGGDKWKSMSEAEKAPYVAKAEKRKVEYEKNMKAYNKKQAEGT 120

Query: 121 NAA-EEDESEKSMSEVNDDEDGDEGSEEEDDDE 135
               EEDESEKS+SEVND ED ++GSEEE+DDE
Sbjct: 121 KVVEEEDESEKSLSEVNDQEDDEDGSEEEEDDE 153

The following BLAST results are available for this feature:

BLAST of ClCG11G018780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HMGL_SOYBN	6.2e-48	66.45	HMG1/2-like protein OS=Glycine max PE=2 SV=1	[more]
HMGL_IPONI	2.4e-39	59.73	HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1	[more]
HMGB3_ARATH	9.0e-39	58.39	High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3 PE=1 SV=1	[more]
HMGB2_ARATH	1.5e-38	57.05	High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2 PE=1 SV=1	[more]
MNB1B_MAIZE	1.8e-34	54.43	DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1	[more]

BLAST of ClCG11G018780 vs. TrEMBL


Match Name	E-value	Identity	Description
D7UDB2_VITVI	5.3e-46	67.32	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g01190 PE=4 SV=...	[more]
A0A0B2QK17_GLYSO	7.0e-46	66.45	HMG1/2-like protein OS=Glycine soja GN=glysoja_014685 PE=4 SV=1	[more]
A0A0R0JGZ3_SOYBN	7.0e-46	66.45	Uncharacterized protein OS=Glycine max GN=GLYMA_06G017100 PE=4 SV=1	[more]
I1JSU3_SOYBN	7.0e-46	66.45	Uncharacterized protein OS=Glycine max GN=GLYMA_04G016800 PE=4 SV=1	[more]
A0A0B2RND4_GLYSO	7.0e-46	66.45	HMG1/2-like protein OS=Glycine soja GN=glysoja_013800 PE=4 SV=1	[more]

BLAST of ClCG11G018780 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G20693.1	8.7e-40	57.05	high mobility group B2	[more]
AT2G17560.1	4.3e-31	50.34	high mobility group B4	[more]
AT1G20696.2	1.5e-28	60.71	high mobility group B3	[more]
AT3G51880.2	9.3e-26	43.26	high mobility group B1	[more]
AT4G35570.1	6.5e-19	36.64	high mobility group B5	[more]

BLAST of ClCG11G018780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659104775\|ref\|XP_008452973.1\|	1.5e-62	87.25	PREDICTED: HMG1/2-like protein isoform X1 [Cucumis melo]	[more]
gi\|659104777\|ref\|XP_008452974.1\|	3.8e-61	85.81	PREDICTED: HMG1/2-like protein isoform X2 [Cucumis melo]	[more]
gi\|449455609\|ref\|XP_004145545.1\|	1.9e-60	85.14	PREDICTED: HMG1/2-like protein [Cucumis sativus]	[more]
gi\|1009133731\|ref\|XP_015884062.1\|	5.3e-47	73.03	PREDICTED: HMG1/2-like protein [Ziziphus jujuba]	[more]
gi\|225457566\|ref\|XP_002272299.1\|	7.6e-46	67.32	PREDICTED: HMG1/2-like protein [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009071	HMG_box_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006996	organelle organization
biological_process	GO:0006970	response to osmotic stress
biological_process	GO:0044699	single-organism process
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0008150	biological_process
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G018780.1	ClCG11G018780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009071	High mobility group box domain	GENE3D	G3DSA:1.10.30.10		coord: 70..114 score: 2.1E-4coord: 38..66 score: 5.
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 41..67 score: 2.
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 40..96 score: 7.3
IPR009071	High mobility group box domain	PROFILE	PS50118	HMG_BOX_2	coord: 41..95 score: 12
IPR009071	High mobility group box domain	unknown	SSF47095	HMG-box	coord: 28..100 score: 1.83
None	No IPR available	unknown	Coil	Coil	coord: 77..97 scor
None	No IPR available	PANTHER	PTHR13711	SWI/SNF-RELATED CHROMATIN BINDING PROTEIN	coord: 25..134 score: 3.0
None	No IPR available	PANTHER	PTHR13711:SF223	HIGH MOBILITY GROUP B PROTEIN 2-RELATED	coord: 25..134 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG11G018780	Csa4G663680	Cucumber (Chinese Long) v2	cuwcgB280
ClCG11G018780	MELO3C017031	Melon (DHL92) v3.5.1	mewcgB463
ClCG11G018780	Cla023454	Watermelon (97103) v1	wcgwmB103
ClCG11G018780	Cla97C11G224900	Watermelon (97103) v2	wcgwmbB064
ClCG11G018780	Bhi09G002387	Wax gourd	wcgwgoB182
ClCG11G018780	CSPI04G26980	Wild cucumber (PI 183967)	cpiwcgB290
ClCG11G018780	Cucsa.272190	Cucumber (Gy14) v1	cgywcgB469
ClCG11G018780	CmaCh09G000490	Cucurbita maxima (Rimu)	cmawcgB017
ClCG11G018780	CmaCh01G020210	Cucurbita maxima (Rimu)	cmawcgB389
ClCG11G018780	CmoCh01G020780	Cucurbita moschata (Rifu)	cmowcgB388
ClCG11G018780	CmoCh09G000520	Cucurbita moschata (Rifu)	cmowcgB010
ClCG11G018780	Lsi04G018120	Bottle gourd (USVL1VR-Ls)	lsiwcgB261
ClCG11G018780	Cp4.1LG02g08320	Cucurbita pepo (Zucchini)	cpewcgB491
ClCG11G018780	Cp4.1LG06g00340	Cucurbita pepo (Zucchini)	cpewcgB696
ClCG11G018780	CsGy4G025300	Cucumber (Gy14) v2	cgybwcgB260
ClCG11G018780	MELO3C017031.2	Melon (DHL92) v3.6.1	medwcgB456
ClCG11G018780	Carg21367	Silver-seed gourd	carwcgB0349
ClCG11G018780	Carg08624	Silver-seed gourd	carwcgB0102
ClCG11G018780	CsaV3_4G037350	Cucumber (Chinese Long) v3	cucwcgB289

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG11G018780	Cucumber (Chinese Long) v2	cuwcgB533