Carg08624 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08624
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	High mobility group B protein 2
Location	Cucurbita_argyrosperma_scaffold_057 : 204260 .. 205862 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGCGGAAAATCGAAGTCGGAGTCGAAGAAAGCAGACACCAAGTAACTTTTTTTTCTTCCTCCGTGCTTTTTCTGTCGTATATGTTTATGTTTTAGTTTTGATCGGCCCTAGATCTATGAAGCCTCATTGTTGTGAATTACCTGTCCCAAAGCTAGGCGTTGACCTCTTTCTTTCTGATTGATCGTTGTCTAAGGTTTCACCCCCAAAATATTGTAGGCTTGCAGTGAAGAAAGGTGCAGCCAACGCGGGCAAAAAAGGAAGTAAGAAGGCAGCGAAAGATCCTAACAAGCCCAAGAGGCCCGCCAGTGCCTTCTTCGTTTTTATGTAATTTTTTAATCTTCTAATTTACTTTTCGAATTCTGAATTATTCTGCATATATTCAATTTATTTGATTTTCATGGTTGTGAAGTTTTTTAAAAAAATGTCAACAAGGACAGATTAACGATGAACTTGATTTCCACGATTTTTTATTGGGGTATCCAACATTTGTAGCTAACGATATTCAAGTTCGTCTCAAATACCTTACCGAAACATAAGCGAATGTTAAAACAGCTTGGCTCTCTACAAAAGAGATTCCTTTGATTTGATGTGTCTATTTGCTTTAGGACCCTTTTTTTTAGCAGTTGTTTTCTTCCTGTAAATTGTCGAGTACGTATATAATCATTGTGCTGTCATGTTGTTGCATTTTTTGATAATTAAAGGGAAGAGTTCAGGAAGAAGTTCAATGAGGAGAATCCGAATAACAAAGCAGTGTCTGCTGTAAGCTATTCAGCTTTCTAATAGTCGCTCTTTTAGTTTTTGACTCCATTCCAACTTTTATGGTTCTTTGTTGAAATGATCGATGATACCTACAAATGATGCAATCAGGTTGGTAAGGCTGCTGGACAGAAATGGAAATCGATGTCAGAAGCTGTACGTGATAGCTATCGTAGTATTTCTTATACTTCTCCTGGTATTATAAACTCTATCTGAATTACTGTTTATAATATCAGGATAAAGCACCTTACGTTGCCAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAGTTATGAAGGCCTATAACAAGAAACAGGTATATCCTCTTGTTAAAGCTTATGAAGCATGTATATTTCCGCACTGTCTTTCTTATTTGAATTGAATTCACTCCCCTTGTGAGTTTCAGGCCAGTGGAGCCAATGCTGCAGAAGAAGATGAATCTGAGAAATCAGTGTCTGAGGTGAATGATGATGAGGAAGGAGATGAGGGCAGCGAAGAGGTAATCTTTTTTATGGAGTTTATTTAAATTTGACATTATAGTGGTAATGTTTGAGCCCTAAATTCATTTTATTTTATTTTTCTTTATTTTTACAGGAGGACGATGACGAGTGATAAAAATGTAGATGATAGCAACGTCATTTAGGCTCTCAGTGTACTTGATCTTTCCATAATAATGGTGTGATCATTTCCTGTTAATTTGTTTTGTTATATCATGAAAATATTTTAGTATCTCCCTGTTATTTTGTTTGTGCATTCAGTAACGGAAGGTTGTATTGGGAGATCATCTGTCTTGTACCTTACAATGTTAGTTATCCAATCCAACTATCTTTTTTTTCCCTT

mRNA sequence

ATGAAAGGCGGAAAATCGAAGTCGGAGTCGAAGAAAGCAGACACCAAGCTTGCAGTGAAGAAAGGTGCAGCCAACGCGGGCAAAAAAGGAAGTAAGAAGGCAGCGAAAGATCCTAACAAGCCCAAGAGGCCCGCCAGTGCCTTCTTCGTTTTTATGGAAGAGTTCAGGAAGAAGTTCAATGAGGAGAATCCGAATAACAAAGCAGTGTCTGCTGTTGGTAAGGCTGCTGGACAGAAATGGAAATCGATGTCAGAAGCTGATAAAGCACCTTACGTTGCCAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAGTTATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCAGAAGAAGATGAATCTGAGAAATCAGTGTCTGAGGTGAATGATGATGAGGAAGGAGATGAGGGCAGCGAAGAGGAGGACGATGACGAGTGATAAAAATGTAGATGATAGCAACGTCATTTAGGCTCTCAGTGTACTTGATCTTTCCATAATAATGGTGTGATCATTTCCTGTTAATTTGTTTTGTTATATCATGAAAATATTTTAGTATCTCCCTGTTATTTTGTTTGTGCATTCAGTAACGGAAGGTTGTATTGGGAGATCATCTGTCTTGTACCTTACAATGTTAGTTATCCAATCCAACTATCTTTTTTTTCCCTT

Coding sequence (CDS)

ATGAAAGGCGGAAAATCGAAGTCGGAGTCGAAGAAAGCAGACACCAAGCTTGCAGTGAAGAAAGGTGCAGCCAACGCGGGCAAAAAAGGAAGTAAGAAGGCAGCGAAAGATCCTAACAAGCCCAAGAGGCCCGCCAGTGCCTTCTTCGTTTTTATGGAAGAGTTCAGGAAGAAGTTCAATGAGGAGAATCCGAATAACAAAGCAGTGTCTGCTGTTGGTAAGGCTGCTGGACAGAAATGGAAATCGATGTCAGAAGCTGATAAAGCACCTTACGTTGCCAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAGTTATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCAGAAGAAGATGAATCTGAGAAATCAGTGTCTGAGGTGAATGATGATGAGGAAGGAGATGAGGGCAGCGAAGAGGAGGACGATGACGAGTGA

Protein sequence

MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAAEEDESEKSVSEVNDDEEGDEGSEEEDDDE

Homology

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BLAST of Carg08624 vs. NCBI nr
Match: XP_022936925.1 (HMG1/2-like protein [Cucurbita moschata] >XP_023536298.1 HMG1/2-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 185.7 bits (470), Expect = 1.2e-43
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAANAXXXXXXXXXXXXXXPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKADTKLAVKKGAANAXXXXXXXXXXXXXXPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAXXXXXXXXXXXXXXPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQAS 116
           EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQAS
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQAS 115

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BLAST of Carg08624 vs. NCBI nr
Match: XP_022975791.1 (HMG1/2-like protein [Cucurbita maxima])

HSP 1 Score: 185.7 bits (470), Expect = 1.2e-43
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAANAXXXXXXXXXXXXXXPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKADTKLAVKKGAANAXXXXXXXXXXXXXXPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAXXXXXXXXXXXXXXPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQAS 116
           EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQAS
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQAS 115

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BLAST of Carg08624 vs. NCBI nr
Match: XP_008452973.1 (PREDICTED: HMG1/2-like protein [Cucumis melo])

HSP 1 Score: 171.4 bits (433), Expect = 2.3e-39
Identity = 98/115 (85.22%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAANAXXXXXXXXXXXXXXPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKADTKLAVKKGAA      XXX       PKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAAG--KKGXXXAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQAS 116
           EENPNNKAVSAVGKAAGQKWKSMS+A+KAPY+AKADKRKVEYEK MKAYNKKQAS
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQAS 113

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BLAST of Carg08624 vs. NCBI nr
Match: XP_004145545.1 (PREDICTED: HMG1/2-like protein [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 6.7e-39
Identity = 94/115 (81.74%), Postives = 98/115 (85.22%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAANAXXXXXXXXXXXXXXPKRPASAFFVFMEEFRKKFN 60
           MKGGKS+SESKKADTKLAVKKGA  A              PKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSRSESKKADTKLAVKKGA--AAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQAS 116
           EENPNNKAVSAVGKAAGQKWKSMS+A+KAPY+AKADKRKVEYEK MKAYNKKQAS
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQAS 113

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BLAST of Carg08624 vs. NCBI nr
Match: XP_022940991.1 (HMG1/2-like protein isoform X1 [Cucurbita moschata])

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 97/115 (84.35%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAANAXXXXXXXXXXXXXXPKRPASAFFVFMEEFRKKFN 60
           MKGGKSK+ES K   KLAVKKG   AXXXXXXXXX     PKRPASAFFVFMEEFRKKF+
Sbjct: 1   MKGGKSKTESMKPHAKLAVKKG---AXXXXXXXXXKDPNKPKRPASAFFVFMEEFRKKFS 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQAS 116
           EENPNNKAVSAVGKAAG KWKSMS+A+KAPYVAKADKRKVEYEK MKAYNKKQAS
Sbjct: 61  EENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQAS 112

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BLAST of Carg08624 vs. TAIR10
Match: AT1G20693.1 (high mobility group B2)

HSP 1 Score: 118.6 bits (296), Expect = 3.2e-27
Identity = 67/112 (59.82%), Postives = 83/112 (74.11%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAANAXXXXXXXXXXXXXXPKRPASAFFVFMEEFRKKFN 60
           MKG KSK+E++   +KL+V K  A                PKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAKG-AGRGKAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKK 113
           +ENP NK+V+ VGKAAG KWKS+S+++KAPYVAKA+KRKVEYEK +KAYNKK
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKK 109

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BLAST of Carg08624 vs. TAIR10
Match: AT1G20696.2 (high mobility group B3)

HSP 1 Score: 108.6 bits (270), Expect = 3.3e-24
Identity = 76/112 (67.86%), Postives = 91/112 (81.25%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAANAXXXXXXXXXXXXXXPKRPASAFFVFMEEFRKKFN 60
           MKG KSK+E++   TKL+V K  A    XXXXXXXXXXXX    +SAFFVFME+FR  + 
Sbjct: 1   MKGAKSKAETR--STKLSVTKKPA----XXXXXXXXXXXXXXXXSSAFFVFMEDFRVTYK 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKK 113
           EE+P NK+V+AVGKA G+KWKS+S+++KAPYVAKADKRKVEYEK MKAYNKK
Sbjct: 61  EEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKK 106

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BLAST of Carg08624 vs. TAIR10
Match: AT2G17560.1 (high mobility group B4)

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-23
Identity = 60/115 (52.17%), Postives = 77/115 (66.96%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAANAXXXXXXXXXXXXXXPKRPASAFFVFMEEFRKKFN 60
           MKGG+SK+E+   D +L  +   A                PKRP SAFFVF+E+FRK+FN
Sbjct: 1   MKGGESKAEATSTDQRLKTRGRKAG------KKTKKDPNQPKRPPSAFFVFLEDFRKEFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQAS 116
             NPNNK+V+ VGKAAG +WK+M++ DKAPYVAKA+ RK EY K ++ YN K AS
Sbjct: 61  LANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLAS 109

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BLAST of Carg08624 vs. TAIR10
Match: AT4G35570.1 (high mobility group B5)

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-17
Identity = 47/115 (40.87%), Postives = 72/115 (62.61%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAANAXXXXXXXXXXXXXXPKRPASAFFVFMEEFRKKFN 60
           MK  +++ ES+  D +L V+                    PK+P S FFVF+++FRK+FN
Sbjct: 1   MKDNQTEVESRSTDDRLKVRGNKVG-------KKTKDPNRPKKPPSPFFVFLDDFRKEFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQAS 116
             NP+NK+V  VG+AAG+KWK+M+E ++AP+VAK+  +K EY   M+ YN + A+
Sbjct: 61  LANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQYNMELAN 108

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BLAST of Carg08624 vs. TAIR10
Match: AT3G51880.2 (high mobility group B1)

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-13
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 46  SAFFVFMEEFRKKFNEENPNNKAVSAVGKAAGQKWKSMSEADKAP 91
           SAFFVF+E+FR  F +ENPN KAVSAVGKA GQKWKSMS+A+KAP
Sbjct: 58  SAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAP 102

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BLAST of Carg08624 vs. Swiss-Prot
Match: sp|P26585|HMGL_SOYBN (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.8e-33
Identity = 82/117 (70.09%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAV-KKGAAN--AXXXXXXXXXXXXXXPKRPASAFFVFMEEFRK 60
           MKGGKSK+ESK+AD KLAV KKGAA                  PKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 61  KFNEENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQA 115
            FN+E+P NKAVSAVGKAAG KWK+MS+A+KAPYVAK++KRKVEYEK M+AYNKKQA
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQA 117

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BLAST of Carg08624 vs. Swiss-Prot
Match: sp|O49596|HMGB2_ARATH (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.8e-26
Identity = 67/112 (59.82%), Postives = 83/112 (74.11%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAANAXXXXXXXXXXXXXXPKRPASAFFVFMEEFRKKFN 60
           MKG KSK+E++   +KL+V K  A                PKRPASAFFVFME+FR+ F 
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAKG-AGRGKAAAKDPNKPKRPASAFFVFMEDFRETFK 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKK 113
           +ENP NK+V+ VGKAAG KWKS+S+++KAPYVAKA+KRKVEYEK +KAYNKK
Sbjct: 61  KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKK 109

[Close]

BLAST of Carg08624 vs. Swiss-Prot
Match: sp|P40619|HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-24
Identity = 63/111 (56.76%), Postives = 81/111 (72.97%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAANAXXXXXXXXXXXXXXPKRPASAFFVFMEEFRKKFN 60
           MKGGKSK+   K+D KLAVKK AA+               PKRP SAFFVFME+FRK + 
Sbjct: 1   MKGGKSKA---KSDNKLAVKKQAADT--KKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYK 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNK 112
           E++PNNK+V+ VGKA G KWK ++ A+KAP+++KA+KRK EYEK ++AYNK
Sbjct: 61  EKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNK 106

[Close]

BLAST of Carg08624 vs. Swiss-Prot
Match: sp|P93047|HMGB3_ARATH (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.0e-23
Identity = 76/112 (67.86%), Postives = 91/112 (81.25%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAANAXXXXXXXXXXXXXXPKRPASAFFVFMEEFRKKFN 60
           MKG KSK+E++   TKL+V K  A    XXXXXXXXXXXX    +SAFFVFME+FR  + 
Sbjct: 1   MKGAKSKAETR--STKLSVTKKPA----XXXXXXXXXXXXXXXXSSAFFVFMEDFRVTYK 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKK 113
           EE+P NK+V+AVGKA G+KWKS+S+++KAPYVAKADKRKVEYEK MKAYNKK
Sbjct: 61  EEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKK 106

[Close]

BLAST of Carg08624 vs. Swiss-Prot
Match: sp|Q42344|HMGB4_ARATH (High mobility group B protein 4 OS=Arabidopsis thaliana OX=3702 GN=HMGB4 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-22
Identity = 60/115 (52.17%), Postives = 77/115 (66.96%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAANAXXXXXXXXXXXXXXPKRPASAFFVFMEEFRKKFN 60
           MKGG+SK+E+   D +L  +   A                PKRP SAFFVF+E+FRK+FN
Sbjct: 1   MKGGESKAEATSTDQRLKTRGRKAG------KKTKKDPNQPKRPPSAFFVFLEDFRKEFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQAS 116
             NPNNK+V+ VGKAAG +WK+M++ DKAPYVAKA+ RK EY K ++ YN K AS
Sbjct: 61  LANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLAS 109

[Close]

BLAST of Carg08624 vs. TrEMBL
Match: tr|A0A1S3BW96|A0A1S3BW96_CUCME (HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.5e-39
Identity = 98/115 (85.22%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAANAXXXXXXXXXXXXXXPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKADTKLAVKKGAA      XXX       PKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAAG--KKGXXXAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQAS 116
           EENPNNKAVSAVGKAAGQKWKSMS+A+KAPY+AKADKRKVEYEK MKAYNKKQAS
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQAS 113

[Close]

BLAST of Carg08624 vs. TrEMBL
Match: tr|A0A2P4M0F4|A0A2P4M0F4_QUESU (Hmg1/2-like protein OS=Quercus suber OX=58331 GN=CFP56_16010 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32
Identity = 82/116 (70.69%), Postives = 94/116 (81.03%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAAN--AXXXXXXXXXXXXXXPKRPASAFFVFMEEFRKK 60
           MKG KS+SE KKAD+KL+VKKG A+  A              PKRPASAFFVFMEEFRK+
Sbjct: 13  MKGAKSRSEPKKADSKLSVKKGGASTKAPAGRKGKAAKDPNKPKRPASAFFVFMEEFRKQ 72

Query: 61  FNEENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQA 115
           FN+++P NK+VSAVGKAAG KWKSMSEA+KAPYVAKA+KRKV+YEK MKAYNKKQA
Sbjct: 73  FNKDHPENKSVSAVGKAAGAKWKSMSEAEKAPYVAKAEKRKVDYEKNMKAYNKKQA 128

[Close]

BLAST of Carg08624 vs. TrEMBL
Match: tr|A0A2P4N028|A0A2P4N028_QUESU (Hmg1/2-like protein OS=Quercus suber OX=58331 GN=CFP56_54313 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32
Identity = 82/116 (70.69%), Postives = 94/116 (81.03%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAAN--AXXXXXXXXXXXXXXPKRPASAFFVFMEEFRKK 60
           MKG KS+SE KKAD+KL+VKKG A+  A              PKRPASAFFVFMEEFRK+
Sbjct: 27  MKGAKSRSEPKKADSKLSVKKGGASTKAPAGRKGKAAKDPNKPKRPASAFFVFMEEFRKQ 86

Query: 61  FNEENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQA 115
           FN+++P NK+VSAVGKAAG KWKSMSEA+KAPYVAKA+KRKV+YEK MKAYNKKQA
Sbjct: 87  FNKDHPENKSVSAVGKAAGAKWKSMSEAEKAPYVAKAEKRKVDYEKNMKAYNKKQA 142

[Close]

BLAST of Carg08624 vs. TrEMBL
Match: tr|A0A1J7H019|A0A1J7H019_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_03848 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.4e-32
Identity = 84/118 (71.19%), Postives = 95/118 (80.51%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKK---GAAN-AXXXXXXXXXXXXXXPKRPASAFFVFMEEFR 60
           MKGGKSK+E+K+AD KL+V K   GAA  A              PKRPASAFFVFMEEFR
Sbjct: 1   MKGGKSKTETKRADPKLSVNKKGAGAAKPARKPAKGKAAKDPNKPKRPASAFFVFMEEFR 60

Query: 61  KKFNEENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQA 115
           K+FN+ENP+NKAVSAVGKAAG KWKS+SEA+KAPYVAKA+KRKVEYEK M+AYNKKQA
Sbjct: 61  KQFNKENPDNKAVSAVGKAAGAKWKSLSEAEKAPYVAKAEKRKVEYEKNMRAYNKKQA 118

[Close]

BLAST of Carg08624 vs. TrEMBL
Match: tr|A0A151RZ15|A0A151RZ15_CAJCA (HMG1/2-like protein OS=Cajanus cajan OX=3821 GN=KK1_030553 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.4e-32
Identity = 84/117 (71.79%), Postives = 94/117 (80.34%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAV-KKGAAN--AXXXXXXXXXXXXXXPKRPASAFFVFMEEFRK 60
           MKGGKSK+ESK+AD KLAV KKGAA                  PKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 61  KFNEENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQA 115
           +FN+ENP+NKAVSAVGKAAG KWKSMS+A+KAPYVAK++KRKVEYEK M+AYNKKQA
Sbjct: 61  QFNKENPDNKAVSAVGKAAGAKWKSMSDAEKAPYVAKSEKRKVEYEKSMRAYNKKQA 117

The following BLAST results are available for this feature:

BLAST of Carg08624 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022936925.1	1.2e-43	100.00	HMG1/2-like protein [Cucurbita moschata] >XP_023536298.1 HMG1/2-like protein [Cu...	[more]
XP_022975791.1	1.2e-43	100.00	HMG1/2-like protein [Cucurbita maxima]	[more]
XP_008452973.1	2.3e-39	85.22	PREDICTED: HMG1/2-like protein [Cucumis melo]	[more]
XP_004145545.1	6.7e-39	81.74	PREDICTED: HMG1/2-like protein [Cucumis sativus]	[more]
XP_022940991.1	1.3e-34	84.35	HMG1/2-like protein isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg08624 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G20693.1	3.2e-27	59.82	high mobility group B2	[more]
AT1G20696.2	3.3e-24	67.86	high mobility group B3	[more]
AT2G17560.1	1.3e-23	52.17	high mobility group B4	[more]
AT4G35570.1	1.4e-17	40.87	high mobility group B5	[more]
AT3G51880.2	2.0e-13	77.78	high mobility group B1	[more]

BLAST of Carg08624 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P26585\|HMGL_SOYBN	3.8e-33	70.09	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
sp\|O49596\|HMGB2_ARATH	5.8e-26	59.82	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
sp\|P40619\|HMGL_IPONI	1.4e-24	56.76	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
sp\|P93047\|HMGB3_ARATH	6.0e-23	67.86	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
sp\|Q42344\|HMGB4_ARATH	2.3e-22	52.17	High mobility group B protein 4 OS=Arabidopsis thaliana OX=3702 GN=HMGB4 PE=1 SV...	[more]

BLAST of Carg08624 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BW96\|A0A1S3BW96_CUCME	1.5e-39	85.22	HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=4 SV=1	[more]
tr\|A0A2P4M0F4\|A0A2P4M0F4_QUESU	1.1e-32	70.69	Hmg1/2-like protein OS=Quercus suber OX=58331 GN=CFP56_16010 PE=4 SV=1	[more]
tr\|A0A2P4N028\|A0A2P4N028_QUESU	1.1e-32	70.69	Hmg1/2-like protein OS=Quercus suber OX=58331 GN=CFP56_54313 PE=4 SV=1	[more]
tr\|A0A1J7H019\|A0A1J7H019_LUPAN	2.4e-32	71.19	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_03848 PE=4 S...	[more]
tr\|A0A151RZ15\|A0A151RZ15_CAJCA	2.4e-32	71.79	HMG1/2-like protein OS=Cajanus cajan OX=3821 GN=KK1_030553 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036910	HMG_box_dom_sf
IPR009071	HMG_box_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08624-RA	Carg08624-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 92..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..149
None	No IPR available	PANTHER	PTHR13711	SWI/SNF-RELATED CHROMATIN BINDING PROTEIN	coord: 1..148
None	No IPR available	PANTHER	PTHR13711:SF222	HIGH MOBILITY GROUP B PROTEIN 2-RELATED	coord: 1..148
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 41..107 e-value: 9.65873E-14 score: 61.4897
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 40..111 e-value: 1.0E-25 score: 101.4
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 41..110 e-value: 4.1E-23 score: 81.5
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 41..110 score: 20.004
IPR036910	High mobility group box domain superfamily	GENE3D	G3DSA:1.10.30.10		coord: 27..113 e-value: 6.2E-27 score: 95.8
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	SSF47095	HMG-box	coord: 28..115

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08624	Cla023454	Watermelon (97103) v1	carwmB0104
Carg08624	Csa4G663680	Cucumber (Chinese Long) v2	carcuB0113
Carg08624	MELO3C017031	Melon (DHL92) v3.5.1	carmeB0107
Carg08624	ClCG11G018780	Watermelon (Charleston Gray)	carwcgB0102
Carg08624	CSPI04G26980	Wild cucumber (PI 183967)	carcpiB0118
Carg08624	Cucsa.272190	Cucumber (Gy14) v1	carcgyB0125
Carg08624	CmaCh01G020210	Cucurbita maxima (Rimu)	carcmaB0136
Carg08624	CmaCh09G000490	Cucurbita maxima (Rimu)	carcmaB0134
Carg08624	CmoCh09G000520	Cucurbita moschata (Rifu)	carcmoB0144
Carg08624	CmoCh01G020780	Cucurbita moschata (Rifu)	carcmoB0146
Carg08624	Lsi04G018120	Bottle gourd (USVL1VR-Ls)	carlsiB094
Carg08624	Cp4.1LG06g00340	Cucurbita pepo (Zucchini)	carcpeB0154
Carg08624	CsGy4G025300	Cucumber (Gy14) v2	carcgybB0113
Carg08624	MELO3C017031.2	Melon (DHL92) v3.6.1	carmedB0109
Carg08624	CsaV3_4G037350	Cucumber (Chinese Long) v3	carcucB0122
Carg08624	Cla97C11G224900	Watermelon (97103) v2	carwmbB0106
Carg08624	Bhi09G002387	Wax gourd	carwgoB0119

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08624	Carg21367	Silver-seed gourd	carcarB120

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08624	Silver-seed gourd	carcarB122
Carg08624	Cucurbita pepo (Zucchini)	carcpeB0153