Csa4G297430 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G297430
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr4 : 12180896 .. 12181745 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAGAACAATAAAACACCATTGGATGAAGAATTACTGTTAAGCACCAAAAGAACCGAAAATAAACTCAAGAATAGCACCTGCCGTTAAGTTTTGAACCACACCAAACATTCCAGCCCCCAACATTGGTACCCAACTCGGCCGCGACGGTGGTTGTCCACCATAGTTGTTACCTCCATGAGGATAACCAACATGATGATTAGGATATCCCCAATTAGGCTGACCTCCGCCGTAAGAAAAATAACCACCACCATAACCATGCGGATGGGGAGCCGTGGTCCACTGCGGCGCTTGGCAATAAGGTATCCCACGGGTTCCCGTCGGCGAACCGTACGGCTTGAGAATGCATTTGGGATGAATATTGACTCGACAAACGTCGCAGCCATAAACCCAGAAAGAAGAACAATCCTCTTCGCAAATAGAGCATCGGCCAGAGGAGAGCTTGCGGAAGGTGAGTTTATGGCAGCCGTCGATGAGGTGGCGGAGCTGCTCAGGGAATTGGGTGCAAAGTGGATGGACATCGAAGTCGCAGTGATTGCAGCGGTAGAACATGCCGTTGATGGATTCACGGCAGATATTGCAGCGGCGATGGTTCATTTGGTGGATCAGAGCAAGGCGGTGGGAGTGGAGAAAGGAGGATAATTCCTTGGGGGGATCGGTGCAGTACAGGTGGATGTCGACATGGCAATTAGCTTGGCATCGAAATCGGGGGCCGGAGCCGACGGTTTTGCAGATGTGGCAAGTGTATTCTTGGTCGTCGGAATAATGGGTTAGAGGATGGTCTGGATGGAAATGGGAGATGAAATGGTGTGTGGGCACTGGTATCGCCATTGTTTATCTCAGCACT

mRNA sequence

ATGAGGATAACCAACATGATGATTAGGATATCCCCAATTAGGCTGACCTCCGCCGTAAGAAAAATAACCACCACCATAACCATGCGGATGGGGAGCCGTGGTCCACTGCGGCGCTTGGCAATAAGGTATCCCACGGGTTCCCGTCGGCGAACCGTACGGCTTGAGAATGCATTTGGGATGAATATTGACTCGACAAACGTCGCAGCCATAAACCCAGAAAGAAGAACAATCCTCTTCGCAAATAGAGCATCGGCCAGAGGAGAGCTTGCGGAAGGTGAGTTTATGGCAGCCGTCGATGAGGTGGCGGAGCTGCTCAGGGAATTGGGTGCAAAGTGGATGGACATCGAAGTCGCAGTGATTGCAGCGGTAGAACATGCCGTTGATGGATTCACGGCAGATATTGCAGCGGCGATGGTTCATTTGGTGGATCAGAGCAAGGCGGTGGGAGTGGAGAAAGGAGGATAA

Coding sequence (CDS)

ATGAGGATAACCAACATGATGATTAGGATATCCCCAATTAGGCTGACCTCCGCCGTAAGAAAAATAACCACCACCATAACCATGCGGATGGGGAGCCGTGGTCCACTGCGGCGCTTGGCAATAAGGTATCCCACGGGTTCCCGTCGGCGAACCGTACGGCTTGAGAATGCATTTGGGATGAATATTGACTCGACAAACGTCGCAGCCATAAACCCAGAAAGAAGAACAATCCTCTTCGCAAATAGAGCATCGGCCAGAGGAGAGCTTGCGGAAGGTGAGTTTATGGCAGCCGTCGATGAGGTGGCGGAGCTGCTCAGGGAATTGGGTGCAAAGTGGATGGACATCGAAGTCGCAGTGATTGCAGCGGTAGAACATGCCGTTGATGGATTCACGGCAGATATTGCAGCGGCGATGGTTCATTTGGTGGATCAGAGCAAGGCGGTGGGAGTGGAGAAAGGAGGATAA

Protein sequence

MRITNMMIRISPIRLTSAVRKITTTITMRMGSRGPLRRLAIRYPTGSRRRTVRLENAFGMNIDSTNVAAINPERRTILFANRASARGELAEGEFMAAVDEVAELLRELGAKWMDIEVAVIAAVEHAVDGFTADIAAAMVHLVDQSKAVGVEKGG*
Homology
[Close]
BLAST of Csa4G297430 vs. TrEMBL
Match: A0A0A0KXM9_CUCSA (DNA polymerase, beta-like region OS=Cucumis sativus GN=Csa_4G297430 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 5.2e-77
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1 

Query: 1   MRITNMMIRISPIRLTSAVRKITTTITMRMGSRGPLRRLAIRYPTGSRRRTVRLENAFGM 60
           MRITNMMIRISPIRLTSAVRKITTTITMRMGSRGPLRRLAIRYPTGSRRRTVRLENAFGM
Sbjct: 1   MRITNMMIRISPIRLTSAVRKITTTITMRMGSRGPLRRLAIRYPTGSRRRTVRLENAFGM 60

Query: 61  NIDSTNVAAINPERRTILFANRASARGELAEGEFMAAVDEVAELLRELGAKWMDIEVAVI 120
           NIDSTNVAAINPERRTILFANRASARGELAEGEFMAAVDEVAELLRELGAKWMDIEVAVI
Sbjct: 61  NIDSTNVAAINPERRTILFANRASARGELAEGEFMAAVDEVAELLRELGAKWMDIEVAVI 120

Query: 121 AAVEHAVDGFTADIAAAMVHLVDQSKAVGVEKGG 155
           AAVEHAVDGFTADIAAAMVHLVDQSKAVGVEKGG
Sbjct: 121 AAVEHAVDGFTADIAAAMVHLVDQSKAVGVEKGG 154

[Close]
BLAST of Csa4G297430 vs. NCBI nr
Match: gi|700199135|gb|KGN54293.1| (DNA polymerase, beta-like region [Cucumis sativus])

HSP 1 Score: 295.0 bits (754), Expect = 7.4e-77
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1 

Query: 1   MRITNMMIRISPIRLTSAVRKITTTITMRMGSRGPLRRLAIRYPTGSRRRTVRLENAFGM 60
           MRITNMMIRISPIRLTSAVRKITTTITMRMGSRGPLRRLAIRYPTGSRRRTVRLENAFGM
Sbjct: 1   MRITNMMIRISPIRLTSAVRKITTTITMRMGSRGPLRRLAIRYPTGSRRRTVRLENAFGM 60

Query: 61  NIDSTNVAAINPERRTILFANRASARGELAEGEFMAAVDEVAELLRELGAKWMDIEVAVI 120
           NIDSTNVAAINPERRTILFANRASARGELAEGEFMAAVDEVAELLRELGAKWMDIEVAVI
Sbjct: 61  NIDSTNVAAINPERRTILFANRASARGELAEGEFMAAVDEVAELLRELGAKWMDIEVAVI 120

Query: 121 AAVEHAVDGFTADIAAAMVHLVDQSKAVGVEKGG 155
           AAVEHAVDGFTADIAAAMVHLVDQSKAVGVEKGG
Sbjct: 121 AAVEHAVDGFTADIAAAMVHLVDQSKAVGVEKGG 154

The following BLAST results are available for this feature:
BLAST of Csa4G297430 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXM9_CUCSA5.2e-77100.00DNA polymerase, beta-like region OS=Cucumis sativus GN=Csa_4G297430 PE=4 SV=1[more]
BLAST of Csa4G297430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199135|gb|KGN54293.1|7.4e-77100.00DNA polymerase, beta-like region [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU113040cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G297430.1Csa4G297430.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU113040CU113040transcribed_cluster