CmoCh07G010590 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G010590
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDNA polymerase, beta-like region
LocationCmo_Chr07 : 5385914 .. 5386867 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACATTAACTCTACAATCGTCACAGCCGTACACCCAAAAAGAAGAGCAATCAGCTTTGCAAACGGAACAGCAGCCAGCGGAGAGCTTGTGGAGCCTCAACTTATGGGTGGGGTCAATGACATGGCGCAGGCTTTTGGGGAGGTGGGTGCAATATGGATGGACGTGGAAATGGCAGTGGTTGCAGCCGTAGAAATCGCCGTCGATGAATTCACGGCAAACGTCACAAATCCGATGCGTACGCGACGGAACTAGAGGATTACGGATCATGAGAGTGAGAAGGTGGCGGTGGAGGAAGGAGGAGAGTTCGCGGGGATAGTCGGAGTGATGCAATGGAGGATGGTTTGGGTGGTTTGGGTCTGTCGGCGGCGGAGCCATTTTTATCCGATCAGCCGAGAGGAAAAGATGCTTTGGGTGTTGTGTTTGATGTACTTGTAGAGCATTCTTTTATAGTCTCCTCTCTATGATTTTGGCAAAGGCGACGACTTAAGGTGCTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTGACTTGTTCTTACAGGTCACTGTCACATGGGCTTTGTTTTTTTTTCTTAACCAACTATGAAAGATTCCATACACCTCCCTCACTCCCAAGTTGAATTTGTATATTAGGATGTTCATTTCAAGTTATTAAGTAA

mRNA sequence

ATGAACATTAACTCTACAATCGTCACAGCCGTACACCCAAAAAGAAGAGCAATCAGCTTTGCAAACGGAACAGCAGCCAGCGGAGAGCTTGTGGAGCCTCAACTTATGGGTGGGGTCAATGACATGGCGCAGGCTTTTGGGGAGGTGGGTGCAATATGGATGGACGTGGAAATGGCAGTGGTTGCAGCCGTAGAAATCGCCGTCGATGAATTCACGGCAAACGTCACAAATCCGATGCGTCACTGATGTTCATTTCAAGTTATTAAGTAA

Coding sequence (CDS)

ATGAACATTAACTCTACAATCGTCACAGCCGTACACCCAAAAAGAAGAGCAATCAGCTTTGCAAACGGAACAGCAGCCAGCGGAGAGCTTGTGGAGCCTCAACTTATGGGTGGGGTCAATGACATGGCGCAGGCTTTTGGGGAGGTGGGTGCAATATGGATGGACGTGGAAATGGCAGTGGTTGCAGCCGTAGAAATCGCCGTCGATGAATTCACGGCAAACGTCACAAATCCGATGCGTCACTGA
Homology
[Close]
BLAST of CmoCh07G010590 vs. TrEMBL
Match: A0A0A0KXM9_CUCSA (DNA polymerase, beta-like region OS=Cucumis sativus GN=Csa_4G297430 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.2e-14
Identity = 43/81 (53.09%), Postives = 59/81 (72.84%), Query Frame = 1 

Query: 1   MNINSTIVTAVHPKRRAISFANGTAASGELVEPQLMGGVNDMAQAFGEVGAIWMDVEMAV 60
           MNI+ST V A++P+RR I FAN  +A GEL E + M  V+++A+   E+GA WMD+E+AV
Sbjct: 60  MNIDSTNVAAINPERRTILFANRASARGELAEGEFMAAVDEVAELLRELGAKWMDIEVAV 119

Query: 61  VAAVEIAVDEFTANVTNPMRH 82
           +AAVE AVD FTA++   M H
Sbjct: 120 IAAVEHAVDGFTADIAAAMVH 140

[Close]
BLAST of CmoCh07G010590 vs. NCBI nr
Match: gi|700199135|gb|KGN54293.1| (DNA polymerase, beta-like region [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-13
Identity = 43/81 (53.09%), Postives = 59/81 (72.84%), Query Frame = 1 

Query: 1   MNINSTIVTAVHPKRRAISFANGTAASGELVEPQLMGGVNDMAQAFGEVGAIWMDVEMAV 60
           MNI+ST V A++P+RR I FAN  +A GEL E + M  V+++A+   E+GA WMD+E+AV
Sbjct: 60  MNIDSTNVAAINPERRTILFANRASARGELAEGEFMAAVDEVAELLRELGAKWMDIEVAV 119

Query: 61  VAAVEIAVDEFTANVTNPMRH 82
           +AAVE AVD FTA++   M H
Sbjct: 120 IAAVEHAVDGFTADIAAAMVH 140

The following BLAST results are available for this feature:
BLAST of CmoCh07G010590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh07G010590 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXM9_CUCSA7.2e-1453.09DNA polymerase, beta-like region OS=Cucumis sativus GN=Csa_4G297430 PE=4 SV=1[more]
BLAST of CmoCh07G010590 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh07G010590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199135|gb|KGN54293.1|1.0e-1353.09DNA polymerase, beta-like region [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G010590.1CmoCh07G010590.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh07G010590Csa4G297430Cucumber (Chinese Long) v2cmocuB847
CmoCh07G010590ClCG04G007810Watermelon (Charleston Gray)cmowcgB769
CmoCh07G010590Cp4.1LG10g08530Cucurbita pepo (Zucchini)cmocpeB802
CmoCh07G010590Cp4.1LG19g03330Cucurbita pepo (Zucchini)cmocpeB817
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G010590Cucurbita moschata (Rifu)cmocmoB228
CmoCh07G010590Cucurbita moschata (Rifu)cmocmoB460
CmoCh07G010590Cucurbita moschata (Rifu)cmocmoB478
CmoCh07G010590Cucurbita moschata (Rifu)cmocmoB479
CmoCh07G010590Cucurbita moschata (Rifu)cmocmoB483
CmoCh07G010590Cucumber (Gy14) v1cgycmoB0102
CmoCh07G010590Cucumber (Gy14) v1cgycmoB0375
CmoCh07G010590Cucumber (Gy14) v1cgycmoB0508
CmoCh07G010590Cucurbita maxima (Rimu)cmacmoB275
CmoCh07G010590Cucurbita maxima (Rimu)cmacmoB673
CmoCh07G010590Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G010590Cucurbita maxima (Rimu)cmacmoB836
CmoCh07G010590Wild cucumber (PI 183967)cmocpiB853
CmoCh07G010590Wild cucumber (PI 183967)cmocpiB856
CmoCh07G010590Wild cucumber (PI 183967)cmocpiB872
CmoCh07G010590Cucumber (Chinese Long) v2cmocuB843
CmoCh07G010590Cucumber (Chinese Long) v2cmocuB864
CmoCh07G010590Melon (DHL92) v3.5.1cmomeB776
CmoCh07G010590Melon (DHL92) v3.5.1cmomeB784
CmoCh07G010590Watermelon (Charleston Gray)cmowcgB752
CmoCh07G010590Watermelon (97103) v1cmowmB804
CmoCh07G010590Watermelon (97103) v1cmowmB825
CmoCh07G010590Watermelon (97103) v1cmowmB835
CmoCh07G010590Cucurbita pepo (Zucchini)cmocpeB821
CmoCh07G010590Cucurbita pepo (Zucchini)cmocpeB832
CmoCh07G010590Bottle gourd (USVL1VR-Ls)cmolsiB771
CmoCh07G010590Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G010590Bottle gourd (USVL1VR-Ls)cmolsiB787
CmoCh07G010590Bottle gourd (USVL1VR-Ls)cmolsiB788
CmoCh07G010590Cucumber (Gy14) v2cgybcmoB418
CmoCh07G010590Cucumber (Gy14) v2cgybcmoB537
CmoCh07G010590Cucumber (Gy14) v2cgybcmoB680
CmoCh07G010590Cucumber (Gy14) v2cgybcmoB842
CmoCh07G010590Melon (DHL92) v3.6.1cmomedB871
CmoCh07G010590Melon (DHL92) v3.6.1cmomedB881
CmoCh07G010590Melon (DHL92) v3.6.1cmomedB887
CmoCh07G010590Silver-seed gourdcarcmoB0228
CmoCh07G010590Silver-seed gourdcarcmoB0757
CmoCh07G010590Silver-seed gourdcarcmoB0795
CmoCh07G010590Silver-seed gourdcarcmoB1344
CmoCh07G010590Cucumber (Chinese Long) v3cmocucB0997
CmoCh07G010590Cucumber (Chinese Long) v3cmocucB0999
CmoCh07G010590Cucumber (Chinese Long) v3cmocucB1015
CmoCh07G010590Cucumber (Chinese Long) v3cmocucB1017
CmoCh07G010590Watermelon (97103) v2cmowmbB867
CmoCh07G010590Watermelon (97103) v2cmowmbB850
CmoCh07G010590Watermelon (97103) v2cmowmbB853
CmoCh07G010590Watermelon (97103) v2cmowmbB873
CmoCh07G010590Wax gourdcmowgoB1046
CmoCh07G010590Wax gourdcmowgoB1052