ClCG04G007810 (gene) Watermelon (Charleston Gray)

Overview
NameClCG04G007810
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr04 : 22805023 .. 22805519 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATATTGACTCGACAAACATCGCAGCCGTAGACCCACAGAGAAGAACAATCAGTTTCGCAAACAGAGCATCGGCCAGAGGAGAGCTTTCGGAGGGTCAGCTTATGGTGGCCGTCGATGACGTGGCGGACATGCTCAGGGAATTGGGTGCAAAGTGGGTGCACGTCGAAGTCGCAGGGGTTGCAACGGTAAAACATGCCGTCGATGGATTCACGGCAGACATCGCAGCGCCGGTGGTTCATAATGGGAAGCAGAGCAAGGCGGTGGTGGTGGAGGAAGGAGGATAATTCCTGAGGGGAATCGGAGCAGTACGGGTGGACGTCGACGTTGCAGGCGTGGCATCGGTATCGAGGGCCAGTGCCGGAGATCTTGCAGCCGTGGCAGGTGTAATCACGGTCGTCGGAATGATGCATTAGAGAGTGGTTTGGATGGACGTGGGATAACTGATATTGCTTTGCGGAGTTTGTGGGCACCGACGCCATGTTTTTCTGATTAG

mRNA sequence

ATGAATATTGACTCGACAAACATCGCAGCCGTAGACCCACAGAGAAGAACAATCAGTTTCGCAAACAGAGCATCGGCCAGAGGAGAGCTTTCGGAGGGTCAGCTTATGGTGGCCGTCGATGACGTGGCGGACATGCTCAGGGAATTGGGTGCAAAGTGGGTGCACGTCGAAGTCGCAGGGGTTGCAACGGTAAAACATGCCGTCGATGGATTCACGGCAGACATCGCAGCGCCGGTGCAAGGCGGTGGTGGTGGAGGAAGGAGGATAATTCCTGAGGGGAATCGGAGCAGTACGGGTGGACGTCGACGTTGCAGGCGTGGCATCGGTATCGAGGGCCAGTGCCGGAGATCTTGCAGCCGTGGCAGGTGTAATCACGGTCGTCGGAATGATGCATTAGAGAGTGGTTTGGATGGACGTGGGATAACTGATATTGCTTTGCGGAGTTTGTGGGCACCGACGCCATGTTTTTCTGATTAG

Coding sequence (CDS)

ATGAATATTGACTCGACAAACATCGCAGCCGTAGACCCACAGAGAAGAACAATCAGTTTCGCAAACAGAGCATCGGCCAGAGGAGAGCTTTCGGAGGGTCAGCTTATGGTGGCCGTCGATGACGTGGCGGACATGCTCAGGGAATTGGGTGCAAAGTGGGTGCACGTCGAAGTCGCAGGGGTTGCAACGGTAAAACATGCCGTCGATGGATTCACGGCAGACATCGCAGCGCCGGTGCAAGGCGGTGGTGGTGGAGGAAGGAGGATAATTCCTGAGGGGAATCGGAGCAGTACGGGTGGACGTCGACGTTGCAGGCGTGGCATCGGTATCGAGGGCCAGTGCCGGAGATCTTGCAGCCGTGGCAGGTGTAATCACGGTCGTCGGAATGATGCATTAGAGAGTGGTTTGGATGGACGTGGGATAACTGATATTGCTTTGCGGAGTTTGTGGGCACCGACGCCATGTTTTTCTGATTAG

Protein sequence

MNIDSTNIAAVDPQRRTISFANRASARGELSEGQLMVAVDDVADMLRELGAKWVHVEVAGVATVKHAVDGFTADIAAPVQGGGGGGRRIIPEGNRSSTGGRRRCRRGIGIEGQCRRSCSRGRCNHGRRNDALESGLDGRGITDIALRSLWAPTPCFSD
Homology
[Close]
BLAST of ClCG04G007810 vs. TrEMBL
Match: A0A0A0KXM9_CUCSA (DNA polymerase, beta-like region OS=Cucumis sativus GN=Csa_4G297430 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.6e-25
Identity = 58/77 (75.32%), Postives = 71/77 (92.21%), Query Frame = 1 

Query: 1   MNIDSTNIAAVDPQRRTISFANRASARGELSEGQLMVAVDDVADMLRELGAKWVHVEVAG 60
           MNIDSTN+AA++P+RRTI FANRASARGEL+EG+ M AVD+VA++LRELGAKW+ +EVA 
Sbjct: 60  MNIDSTNVAAINPERRTILFANRASARGELAEGEFMAAVDEVAELLRELGAKWMDIEVAV 119

Query: 61  VATVKHAVDGFTADIAA 78
           +A V+HAVDGFTADIAA
Sbjct: 120 IAAVEHAVDGFTADIAA 136

[Close]
BLAST of ClCG04G007810 vs. NCBI nr
Match: gi|700199135|gb|KGN54293.1| (DNA polymerase, beta-like region [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 5.1e-25
Identity = 58/77 (75.32%), Postives = 71/77 (92.21%), Query Frame = 1 

Query: 1   MNIDSTNIAAVDPQRRTISFANRASARGELSEGQLMVAVDDVADMLRELGAKWVHVEVAG 60
           MNIDSTN+AA++P+RRTI FANRASARGEL+EG+ M AVD+VA++LRELGAKW+ +EVA 
Sbjct: 60  MNIDSTNVAAINPERRTILFANRASARGELAEGEFMAAVDEVAELLRELGAKWMDIEVAV 119

Query: 61  VATVKHAVDGFTADIAA 78
           +A V+HAVDGFTADIAA
Sbjct: 120 IAAVEHAVDGFTADIAA 136

The following BLAST results are available for this feature:
BLAST of ClCG04G007810 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXM9_CUCSA3.6e-2575.32DNA polymerase, beta-like region OS=Cucumis sativus GN=Csa_4G297430 PE=4 SV=1[more]
BLAST of ClCG04G007810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199135|gb|KGN54293.1|5.1e-2575.32DNA polymerase, beta-like region [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G007810.1ClCG04G007810.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG04G007810Csa4G297430Cucumber (Chinese Long) v2cuwcgB301
ClCG04G007810CmoCh07G010590Cucurbita moschata (Rifu)cmowcgB769
ClCG04G007810Cp4.1LG10g08540Cucurbita pepo (Zucchini)cpewcgB078
ClCG04G007810Cp4.1LG19g03330Cucurbita pepo (Zucchini)cpewcgB432
ClCG04G007810CsGy4G014440Cucumber (Gy14) v2cgybwcgB282
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG04G007810Wax gourdwcgwgoB390
ClCG04G007810Wax gourdwcgwgoB380
ClCG04G007810Watermelon (Charleston Gray)wcgwcgB051
ClCG04G007810Watermelon (Charleston Gray)wcgwcgB067
ClCG04G007810Watermelon (Charleston Gray)wcgwcgB150
ClCG04G007810Cucumber (Gy14) v1cgywcgB065
ClCG04G007810Cucumber (Gy14) v1cgywcgB226
ClCG04G007810Cucumber (Gy14) v1cgywcgB293
ClCG04G007810Cucumber (Gy14) v1cgywcgB316
ClCG04G007810Cucurbita maxima (Rimu)cmawcgB230
ClCG04G007810Cucurbita maxima (Rimu)cmawcgB585
ClCG04G007810Cucurbita maxima (Rimu)cmawcgB649
ClCG04G007810Cucurbita maxima (Rimu)cmawcgB651
ClCG04G007810Cucurbita maxima (Rimu)cmawcgB736
ClCG04G007810Cucurbita maxima (Rimu)cmawcgB768
ClCG04G007810Cucurbita moschata (Rifu)cmowcgB214
ClCG04G007810Cucurbita moschata (Rifu)cmowcgB584
ClCG04G007810Cucurbita moschata (Rifu)cmowcgB650
ClCG04G007810Cucurbita moschata (Rifu)cmowcgB742
ClCG04G007810Wild cucumber (PI 183967)cpiwcgB224
ClCG04G007810Wild cucumber (PI 183967)cpiwcgB316
ClCG04G007810Wild cucumber (PI 183967)cpiwcgB404
ClCG04G007810Wild cucumber (PI 183967)cpiwcgB491
ClCG04G007810Cucumber (Chinese Long) v2cuwcgB220
ClCG04G007810Cucumber (Chinese Long) v2cuwcgB387
ClCG04G007810Cucumber (Chinese Long) v2cuwcgB467
ClCG04G007810Melon (DHL92) v3.5.1mewcgB061
ClCG04G007810Melon (DHL92) v3.5.1mewcgB285
ClCG04G007810Melon (DHL92) v3.5.1mewcgB330
ClCG04G007810Melon (DHL92) v3.5.1mewcgB530
ClCG04G007810Watermelon (97103) v1wcgwmB251
ClCG04G007810Watermelon (97103) v1wcgwmB253
ClCG04G007810Watermelon (97103) v1wcgwmB255
ClCG04G007810Watermelon (97103) v1wcgwmB266
ClCG04G007810Cucurbita pepo (Zucchini)cpewcgB382
ClCG04G007810Cucurbita pepo (Zucchini)cpewcgB553
ClCG04G007810Bottle gourd (USVL1VR-Ls)lsiwcgB142
ClCG04G007810Bottle gourd (USVL1VR-Ls)lsiwcgB240
ClCG04G007810Bottle gourd (USVL1VR-Ls)lsiwcgB241
ClCG04G007810Bottle gourd (USVL1VR-Ls)lsiwcgB282
ClCG04G007810Cucumber (Gy14) v2cgybwcgB202
ClCG04G007810Cucumber (Gy14) v2cgybwcgB429
ClCG04G007810Melon (DHL92) v3.6.1medwcgB060
ClCG04G007810Melon (DHL92) v3.6.1medwcgB276
ClCG04G007810Melon (DHL92) v3.6.1medwcgB324
ClCG04G007810Melon (DHL92) v3.6.1medwcgB527
ClCG04G007810Silver-seed gourdcarwcgB0025
ClCG04G007810Silver-seed gourdcarwcgB0089
ClCG04G007810Silver-seed gourdcarwcgB0542
ClCG04G007810Silver-seed gourdcarwcgB0569
ClCG04G007810Silver-seed gourdcarwcgB0975
ClCG04G007810Cucumber (Chinese Long) v3cucwcgB224
ClCG04G007810Cucumber (Chinese Long) v3cucwcgB318
ClCG04G007810Cucumber (Chinese Long) v3cucwcgB408
ClCG04G007810Cucumber (Chinese Long) v3cucwcgB488
ClCG04G007810Watermelon (97103) v2wcgwmbB195
ClCG04G007810Watermelon (97103) v2wcgwmbB196
ClCG04G007810Watermelon (97103) v2wcgwmbB200
ClCG04G007810Watermelon (97103) v2wcgwmbB203