CsGy4G014440 (gene) Cucumber (Gy14) v2

Overview
NameCsGy4G014440
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionDNA polymerase, beta-like region
LocationChr4 : 19267936 .. 19268445 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTGTTGTTGGGGAGGTGGCCACGTCCCCCACGGCGGCGGTGCATAGTGGTGGTGCATCCCACGCGAACCAGAAGTCTGTTGGACAGTCGATTTTCGAAGGCAATTGAGATGGATATTGACTTCACAAACAGTACATCCATAAACCCAGAGAGACGAACAGTCTTCTTTGCAAATAGAACAGTGACCGTAGGAGAGCTTGTAGAGGCAGAGTTTATGGTCGGGGTCGATGATGTGGCGGAGGTTGTTGGGGAGGCGGGTGCAATATGAGTGAACGTGGAAGTGGCAGTCTTTGCAATGGTAGAAATTGTCGTGGATGGATTCACGGCAAACGTCGCAAACCCGGTGGGTTCGAGACGGAATAAGGGGGTTGCGAATCATGTGAGTGAGCTTGTGGCCGTGGAGGAAGGAGGAGAGTTCGTGGGGGTAGCCGGTGTCGGGGAAATAATTCATCGGGGTCGGAGTCGGAGGATGGTGGTTGACACTTTTGGGCAGCGGAGCCATTAG

mRNA sequence

ATGAAATTGTTGTTGGGGAGGTGGCCACGTCCCCCACGGCGGCGGTGCATAGTGGTGGTGCATCCCACGCGAACCAGAAGTCTGTTGGACAGTCGATTTTCGAAGGCAATTGAGATGGATATTGACTTCACAAACAGTACATCCATAAACCCAGAGAGACGAACAGTCTTCTTTGCAAATAGAACAGTGACCGTAGGAGAGCTTGTAGAGGCAGAGTTTATGGTCGGGGTCGATGATGTGGCGGAGGTTGTTGGGGAGGCGGAAATTGTCGTGGATGGATTCACGGCAAACGTCGCAAACCCGGTGGGTTCGAGACGGAATAAGGGGGTTGCGAATCATGTGAGTGAGCTTGTGGCCGTGGAGGAAGGAGGAGAGTTCGTGGGGGTAGCCGGTGTCGGGGAAATAATTCATCGGGGTCGGAGTCGGAGGATGGTGGTTGACACTTTTGGGCAGCGGAGCCATTAG

Coding sequence (CDS)

ATGAAATTGTTGTTGGGGAGGTGGCCACGTCCCCCACGGCGGCGGTGCATAGTGGTGGTGCATCCCACGCGAACCAGAAGTCTGTTGGACAGTCGATTTTCGAAGGCAATTGAGATGGATATTGACTTCACAAACAGTACATCCATAAACCCAGAGAGACGAACAGTCTTCTTTGCAAATAGAACAGTGACCGTAGGAGAGCTTGTAGAGGCAGAGTTTATGGTCGGGGTCGATGATGTGGCGGAGGTTGTTGGGGAGGCGGAAATTGTCGTGGATGGATTCACGGCAAACGTCGCAAACCCGGTGGGTTCGAGACGGAATAAGGGGGTTGCGAATCATGTGAGTGAGCTTGTGGCCGTGGAGGAAGGAGGAGAGTTCGTGGGGGTAGCCGGTGTCGGGGAAATAATTCATCGGGGTCGGAGTCGGAGGATGGTGGTTGACACTTTTGGGCAGCGGAGCCATTAG

Protein sequence

MKLLLGRWPRPPRRRCIVVVHPTRTRSLLDSRFSKAIEMDIDFTNSTSINPERRTVFFANRTVTVGELVEAEFMVGVDDVAEVVGEAEIVVDGFTANVANPVGSRRNKGVANHVSELVAVEEGGEFVGVAGVGEIIHRGRSRRMVVDTFGQRSH
Homology
[Close]
BLAST of CsGy4G014440 vs. NCBI nr
Match: KGN54293.1 (DNA polymerase, beta-like region [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-08
Identity = 52/130 (40.00%), Postives = 68/130 (52.31%), Query Frame = 0 

Query: 10  RPPRRRCIVVVHPTRTRSLLDSRFSKAIEMDIDFTNSTSINPERRTVFFANRTVTVGELV 69
           R P RR + + +PT +R     R   A  M+ID TN  +INPERRT+ FANR    GEL 
Sbjct: 33  RGPLRR-LAIRYPTGSRR-RTVRLENAFGMNIDSTNVAAINPERRTILFANRASARGELA 92

Query: 70  EAEFMVGVDDVAE---------------VVGEAEIVVDGFTANVANPVGSRRNKGVANHV 125
           E EFM  VD+VAE               V+   E  VDGFTA++A  +    ++      
Sbjct: 93  EGEFMAAVDEVAELLRELGAKWMDIEVAVIAAVEHAVDGFTADIAAAMVHLVDQ------ 152

[Close]
BLAST of CsGy4G014440 vs. TrEMBL
Match: tr|A0A0A0KXM9|A0A0A0KXM9_CUCSA (DNA polymerase, beta-like region OS=Cucumis sativus OX=3659 GN=Csa_4G297430 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 52/130 (40.00%), Postives = 68/130 (52.31%), Query Frame = 0 

Query: 10  RPPRRRCIVVVHPTRTRSLLDSRFSKAIEMDIDFTNSTSINPERRTVFFANRTVTVGELV 69
           R P RR + + +PT +R     R   A  M+ID TN  +INPERRT+ FANR    GEL 
Sbjct: 33  RGPLRR-LAIRYPTGSRR-RTVRLENAFGMNIDSTNVAAINPERRTILFANRASARGELA 92

Query: 70  EAEFMVGVDDVAE---------------VVGEAEIVVDGFTANVANPVGSRRNKGVANHV 125
           E EFM  VD+VAE               V+   E  VDGFTA++A  +    ++      
Sbjct: 93  EGEFMAAVDEVAELLRELGAKWMDIEVAVIAAVEHAVDGFTADIAAAMVHLVDQ------ 152

The following BLAST results are available for this feature:
BLAST of CsGy4G014440 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54293.11.7e-0840.00DNA polymerase, beta-like region [Cucumis sativus][more]
BLAST of CsGy4G014440 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy4G014440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy4G014440 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KXM9|A0A0A0KXM9_CUCSA1.1e-0840.00DNA polymerase, beta-like region OS=Cucumis sativus OX=3659 GN=Csa_4G297430 PE=4... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G014440.1CsGy4G014440.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy4G014440ClCG04G007810Watermelon (Charleston Gray)cgybwcgB282
CsGy4G014440Cp4.1LG19g03330Cucurbita pepo (Zucchini)cgybcpeB532
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy4G014440Cucumber (Chinese Long) v3cgybcucB169
CsGy4G014440Cucumber (Chinese Long) v3cgybcucB171
CsGy4G014440Cucumber (Chinese Long) v3cgybcucB182
CsGy4G014440Watermelon (97103) v2cgybwmbB260
CsGy4G014440Watermelon (97103) v2cgybwmbB301
CsGy4G014440Watermelon (97103) v2cgybwmbB282
CsGy4G014440Wax gourdcgybwgoB374
CsGy4G014440Cucumber (Gy14) v2cgybcgybB083
CsGy4G014440Cucumber (Gy14) v2cgybcgybB130
CsGy4G014440Cucurbita maxima (Rimu)cgybcmaB488
CsGy4G014440Cucurbita maxima (Rimu)cgybcmaB533
CsGy4G014440Cucurbita maxima (Rimu)cgybcmaB548
CsGy4G014440Cucurbita maxima (Rimu)cgybcmaB556
CsGy4G014440Cucurbita maxima (Rimu)cgybcmaB561
CsGy4G014440Cucurbita maxima (Rimu)cgybcmaB562
CsGy4G014440Cucurbita moschata (Rifu)cgybcmoB458
CsGy4G014440Cucurbita moschata (Rifu)cgybcmoB507
CsGy4G014440Cucurbita moschata (Rifu)cgybcmoB522
CsGy4G014440Cucurbita moschata (Rifu)cgybcmoB530
CsGy4G014440Cucurbita moschata (Rifu)cgybcmoB536
CsGy4G014440Cucurbita moschata (Rifu)cgybcmoB537
CsGy4G014440Cucurbita pepo (Zucchini)cgybcpeB463
CsGy4G014440Cucurbita pepo (Zucchini)cgybcpeB510
CsGy4G014440Cucurbita pepo (Zucchini)cgybcpeB519
CsGy4G014440Cucurbita pepo (Zucchini)cgybcpeB555
CsGy4G014440Cucumber (Chinese Long) v2cgybcuB162
CsGy4G014440Cucumber (Chinese Long) v2cgybcuB167
CsGy4G014440Cucumber (Chinese Long) v2cgybcuB178
CsGy4G014440Bottle gourd (USVL1VR-Ls)cgyblsiB236
CsGy4G014440Bottle gourd (USVL1VR-Ls)cgyblsiB258
CsGy4G014440Melon (DHL92) v3.5.1cgybmeB248
CsGy4G014440Melon (DHL92) v3.5.1cgybmeB279
CsGy4G014440Melon (DHL92) v3.6.1cgybmedB233
CsGy4G014440Melon (DHL92) v3.6.1cgybmedB244
CsGy4G014440Melon (DHL92) v3.6.1cgybmedB246
CsGy4G014440Melon (DHL92) v3.6.1cgybmedB279
CsGy4G014440Watermelon (Charleston Gray)cgybwcgB252
CsGy4G014440Watermelon (Charleston Gray)cgybwcgB301
CsGy4G014440Watermelon (97103) v1cgybwmB314
CsGy4G014440Watermelon (97103) v1cgybwmB270
CsGy4G014440Wild cucumber (PI 183967)cgybcpiB165
CsGy4G014440Wild cucumber (PI 183967)cgybcpiB170
CsGy4G014440Wild cucumber (PI 183967)cgybcpiB181
CsGy4G014440Silver-seed gourdcarcgybB0561
CsGy4G014440Silver-seed gourdcarcgybB0581
CsGy4G014440Silver-seed gourdcarcgybB0985