Cp4.1LG10g08530 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g08530
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDNA polymerase, beta-like region
LocationCp4.1LG10 : 5076179 .. 5076670 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTTGACTTTACAAGCGCTGCAGCCGTAGACCCAGAGAGAAGAACAATCAGCTTTACAAACAGAGCAGCGGGCAGAGGAGAGCTTGTGGAGGAAGAGCTTATGGTTGGGGTCAATAACGTGGCGGAGGCTGCTGGGGAGGTGGGTGCAAAGTGGGTGGACGTGGAAGTGGCAGTCCTTGCAGTGGTAGAAATTGGCGTGGATGGATTCGCAGCACACGTCGCATACCCGATGTGTTCGAGAGGGAACATGGGGGTTGCGGATCATGTGAGCGAGTGGGTGGCGGTGGAGGAAGGAGGAGAGTTCGTGGGGGTAGTCGGAGGAGGTATGCATCGTCGGAGGATGGTTTGGATGGGCATCAGCCATTTCTCTCGATCAGTACCCACAAAAGGAGACAAAAATAGCGCCTCTCTTGCTTGGGGAGCACTCTTGCTTATATGGCTCTCGTTGGTTTTGGCAAAGACCAAGACTTTTAGGGTCTTTATTTAA

mRNA sequence

ATGGATGTTGACTTTACAAGCGCTGCAGCCGTAGACCCAGAGAGAAGAACAATCAGCTTTACAAACAGAGCAGCGGGCAGAGGAGAGCTTGTGGAGGAAGAGCTTATGGTTGGGGTCAATAACGTGGCGGAGGCTGCTGGGGAGGTGGGTGCAAAGTGGGTGGACGTGGAAGTGGCAGTCCTTGCAGTGGTAGAAATTGGCGTGGATGGATTCGCAGCACACGTCGCATACCCGATGTGTTCGAGAGGGAACATGGGGGTTGCGGATCATGTGAGCGAGTGGGTGGCGGTGGAGGAAGGAGGAGAGTTCGTGGGGGTAGTCGGAGGAGGTATGCATCGTCGGAGGATGGTTTGGATGGGCATCAGCCATTTCTCTCGATCAGTACCCACAAAAGGAGACAAAAATAGCGCCTCTCTTGCTTGGGGAGCACTCTTGCTTATATGGCTCTCGTTGGTTTTGGCAAAGACCAAGACTTTTAGGGTCTTTATTTAA

Coding sequence (CDS)

ATGGATGTTGACTTTACAAGCGCTGCAGCCGTAGACCCAGAGAGAAGAACAATCAGCTTTACAAACAGAGCAGCGGGCAGAGGAGAGCTTGTGGAGGAAGAGCTTATGGTTGGGGTCAATAACGTGGCGGAGGCTGCTGGGGAGGTGGGTGCAAAGTGGGTGGACGTGGAAGTGGCAGTCCTTGCAGTGGTAGAAATTGGCGTGGATGGATTCGCAGCACACGTCGCATACCCGATGTGTTCGAGAGGGAACATGGGGGTTGCGGATCATGTGAGCGAGTGGGTGGCGGTGGAGGAAGGAGGAGAGTTCGTGGGGGTAGTCGGAGGAGGTATGCATCGTCGGAGGATGGTTTGGATGGGCATCAGCCATTTCTCTCGATCAGTACCCACAAAAGGAGACAAAAATAGCGCCTCTCTTGCTTGGGGAGCACTCTTGCTTATATGGCTCTCGTTGGTTTTGGCAAAGACCAAGACTTTTAGGGTCTTTATTTAA

Protein sequence

MDVDFTSAAAVDPERRTISFTNRAAGRGELVEEELMVGVNNVAEAAGEVGAKWVDVEVAVLAVVEIGVDGFAAHVAYPMCSRGNMGVADHVSEWVAVEEGGEFVGVVGGGMHRRRMVWMGISHFSRSVPTKGDKNSASLAWGALLLIWLSLVLAKTKTFRVFI
Homology
[Close]
BLAST of Cp4.1LG10g08530 vs. TrEMBL
Match: A0A0A0KXM9_CUCSA (DNA polymerase, beta-like region OS=Cucumis sativus GN=Csa_4G297430 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.1e-16
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 1 

Query: 1   MDVDFTSAAAVDPERRTISFTNRAAGRGELVEEELMVGVNNVAEAAGEVGAKWVDVEVAV 60
           M++D T+ AA++PERRTI F NRA+ RGEL E E M  V+ VAE   E+GAKW+D+EVAV
Sbjct: 60  MNIDSTNVAAINPERRTILFANRASARGELAEGEFMAAVDEVAELLRELGAKWMDIEVAV 119

Query: 61  LAVVEIGVDGFAAHVAYPMCSRGNMGVADHVSEWVAVEEGG 102
           +A VE  VDGF A +A  M     + + D  S+ V VE+GG
Sbjct: 120 IAAVEHAVDGFTADIAAAM-----VHLVDQ-SKAVGVEKGG 154

[Close]
BLAST of Cp4.1LG10g08530 vs. NCBI nr
Match: gi|700199135|gb|KGN54293.1| (DNA polymerase, beta-like region [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-15
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 1 

Query: 1   MDVDFTSAAAVDPERRTISFTNRAAGRGELVEEELMVGVNNVAEAAGEVGAKWVDVEVAV 60
           M++D T+ AA++PERRTI F NRA+ RGEL E E M  V+ VAE   E+GAKW+D+EVAV
Sbjct: 60  MNIDSTNVAAINPERRTILFANRASARGELAEGEFMAAVDEVAELLRELGAKWMDIEVAV 119

Query: 61  LAVVEIGVDGFAAHVAYPMCSRGNMGVADHVSEWVAVEEGG 102
           +A VE  VDGF A +A  M     + + D  S+ V VE+GG
Sbjct: 120 IAAVEHAVDGFTADIAAAM-----VHLVDQ-SKAVGVEKGG 154

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g08530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g08530 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXM9_CUCSA9.1e-1652.48DNA polymerase, beta-like region OS=Cucumis sativus GN=Csa_4G297430 PE=4 SV=1[more]
BLAST of Cp4.1LG10g08530 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG10g08530 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199135|gb|KGN54293.1|1.3e-1552.48DNA polymerase, beta-like region [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g08530.1Cp4.1LG10g08530.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g08530CmoCh07G010590Cucurbita moschata (Rifu)cmocpeB802
Cp4.1LG10g08530Csa4G297430Cucumber (Chinese Long) v2cpecuB070
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g08530Silver-seed gourdcarcpeB0220
Cp4.1LG10g08530Silver-seed gourdcarcpeB0785
Cp4.1LG10g08530Silver-seed gourdcarcpeB0825
Cp4.1LG10g08530Silver-seed gourdcarcpeB1383
Cp4.1LG10g08530Cucumber (Chinese Long) v3cpecucB0073
Cp4.1LG10g08530Cucumber (Chinese Long) v3cpecucB0075
Cp4.1LG10g08530Cucumber (Chinese Long) v3cpecucB0090
Cp4.1LG10g08530Wax gourdcpewgoB0085
Cp4.1LG10g08530Cucurbita pepo (Zucchini)cpecpeB071
Cp4.1LG10g08530Cucurbita pepo (Zucchini)cpecpeB072
Cp4.1LG10g08530Cucurbita pepo (Zucchini)cpecpeB084
Cp4.1LG10g08530Cucurbita pepo (Zucchini)cpecpeB093
Cp4.1LG10g08530Cucumber (Gy14) v1cgycpeB0095
Cp4.1LG10g08530Cucumber (Gy14) v1cgycpeB0482
Cp4.1LG10g08530Cucurbita maxima (Rimu)cmacpeB256
Cp4.1LG10g08530Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g08530Cucurbita maxima (Rimu)cmacpeB809
Cp4.1LG10g08530Cucurbita maxima (Rimu)cmacpeB862
Cp4.1LG10g08530Cucurbita moschata (Rifu)cmocpeB220
Cp4.1LG10g08530Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g08530Cucurbita moschata (Rifu)cmocpeB653
Cp4.1LG10g08530Cucurbita moschata (Rifu)cmocpeB763
Cp4.1LG10g08530Wild cucumber (PI 183967)cpecpiB063
Cp4.1LG10g08530Wild cucumber (PI 183967)cpecpiB065
Cp4.1LG10g08530Wild cucumber (PI 183967)cpecpiB079
Cp4.1LG10g08530Wild cucumber (PI 183967)cpecpiB082
Cp4.1LG10g08530Cucumber (Chinese Long) v2cpecuB068
Cp4.1LG10g08530Cucumber (Chinese Long) v2cpecuB084
Cp4.1LG10g08530Cucumber (Chinese Long) v2cpecuB086
Cp4.1LG10g08530Bottle gourd (USVL1VR-Ls)cpelsiB048
Cp4.1LG10g08530Bottle gourd (USVL1VR-Ls)cpelsiB061
Cp4.1LG10g08530Watermelon (Charleston Gray)cpewcgB056
Cp4.1LG10g08530Watermelon (Charleston Gray)cpewcgB078
Cp4.1LG10g08530Watermelon (97103) v1cpewmB062
Cp4.1LG10g08530Watermelon (97103) v1cpewmB086
Cp4.1LG10g08530Melon (DHL92) v3.5.1cpemeB053
Cp4.1LG10g08530Melon (DHL92) v3.5.1cpemeB062
Cp4.1LG10g08530Silver-seed gourdcarcpeB0128
Cp4.1LG10g08530Cucumber (Gy14) v2cgybcpeB294
Cp4.1LG10g08530Cucumber (Gy14) v2cgybcpeB463
Cp4.1LG10g08530Cucumber (Gy14) v2cgybcpeB591
Cp4.1LG10g08530Melon (DHL92) v3.6.1cpemedB056
Cp4.1LG10g08530Melon (DHL92) v3.6.1cpemedB070
Cp4.1LG10g08530Melon (DHL92) v3.6.1cpemedB082