Csa4G000940 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G000940
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Ubiquitin carboxyl-terminal hydrolase; contains IPR000286 (Histone deacetylase superfamily), IPR001607 (Zinc finger, UBP-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type)
Location	Chr4 : 242723 .. 244526 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCCATAATGTACTTCTCTTAATTAGAAGCTGCAGAGTCGAAGGTAGTCGTGAAATTCAGTGTGATCATCAATGGCGGAAAAAGCCGGTTCATCTTCTTCCACTTCCAACCCACTGGTACCCTAATCAAACTCATTCCTTCATGTTCTCTTTGATTGCCCCAATAATTCCTACTTCTTTTCTATATTTCTATCTATTTATTGAATCGCTGATTTTGTCTAATGTTGTTTTACGTCTTCTCTAGACACTAATAATCGAAGATGAAGTTGAGGAAGAACTTTTATACGGTGCCGGATCGGGATGGGTCCAAGCTCTGACTTCTTGCGATCATCTCGCTTCCTTATCATCCGACCTCGCTCATATTCCGCCCCCTCAGACTCCCTGTAGCCAGTCAGCTTTTCTTTTCCCTAAACTATGTCTTTAATTCTTATGTTGTTCTTCATCTTAATTTTCGAATGTGTGTACCTTTTCAGTTTCATTTCTATTTCTCCTGAAGGAAGATGTGCTAATTTGATGTTTTGATTCTTTGAGATTTTGCTCCATCAATCGAATTCTTATTGTTTTTGGCTGATAGTTGGTTTAAATCCTCTTTTAGAACTTAAATTTTAATCCCTAAACTTTCATTAAATCCTAATAAGTTAATCGAAATGAATTGAACTCCTGACTTAAATCAAAGTCATGTGGTATTTATTATTAGGCCAACCCATGATATTGATGGTTATCTGAAAGATCAGTCTTTTTAATATGAACAGTAAAGATTTAAAATTAAGTTTTCGGAATGGAGATTTAAAATTAAGTTTTCGGAATGGAGGCTTTTAAGCACAAGATGTTGTCTTTACCACTAAGGCTATCCTTTGAAGTTAGTGTTCCACTGATATCATGCAAAAAAATTGAAGTTCTTCCATTTCAGCTAGACATCTTCTTTCAGTGGCTCTATATCAGTACATTAGATGTTTTATAATCATAACATCCACACCAAAGTCGAGTTCTTTTCTGTCTATTTTTCTATGAATTGTACTTGACGTATTATTTCGTCTAATTTTATAGTGCTTTCAGATGGATTGTCGTGTTTTTATTTGGGCTTATTTCCATGATTTGGATAAACGCATTTCTATTTGGTTTATTAATCCATGGAACAATCTACATATGCAAGATGCCAGAATCCCAAGGAGAATTGGGTGTGTTTATGCTGTAAGGATGTCTTTTGTAGTCGTTTTGTGAATAAGCACATGCTTCAACATTATGAGCAATCAACTCATTGTCTTGCACTCAGCTACAGGTGAATGTAAAATGGTTCCTTAGATTCTACTCTAATTATGAACATAGGTTTGTGATGTTCATTAATAATTTGCATTTGGAAACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGACGCATATTTAGATGCACAAGTGATTCAGGAATTACGACCAGTACACGAAGTTGCCTACATACTGAAATTTGGCGAGGCTCCACCATTTCGATAATATCAATCATCCTGCACTGGGGGAACTGAAATATCTGATTATTAGTGTTATAACTTTTCCAGTCTCTACTTATTAGATGTTTTGATTTCTTGGTCTGTATATGTCAAGCAAATGGCTTATGATCTTCACATGAATTAGGTTGGGTTGTCAAATGTTCATGGTAATTTGGTTGTTCACTTTACAGAAGTGAGGGATAGATTAGAATCTCATATCTTGTTCAAGAAAATTTTAAGAAGCTTTTACTTGAAAATGACAAAATTCTTGTTTCAAACCTTGATGATAACATGAATGAAATTGGTTCCCAACTTTTGTCAC

mRNA sequence

ATGGCGGAAAAAGCCGGTTCATCTTCTTCCACTTCCAACCCACTGACACTAATAATCGAAGATGAAGTTGAGGAAGAACTTTTATACGGTGCCGGATCGGGATGGGTCCAAGCTCTGACTTCTTGCGATCATCTCGCTTCCTTATCATCCGACCTCGCTCATATTCCGCCCCCTCAGACTCCCTGTAGCCAATGCCAGAATCCCAAGGAGAATTGGGTGTGTTTATGCTGTAAGGATGTCTTTTGTAGTCGTTTTGTGAATAAGCACATGCTTCAACATTATGAGCAATCAACTCATTGTCTTGCACTCAGCTACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGACGCATATTTAGATGCACAAGTGATTCAGGAATTACGACCAGTACACGAAGTTGCCTACATACTGAAATTTGGCGAGGCTCCACCATTTCGATAA

Coding sequence (CDS)

ATGGCGGAAAAAGCCGGTTCATCTTCTTCCACTTCCAACCCACTGACACTAATAATCGAAGATGAAGTTGAGGAAGAACTTTTATACGGTGCCGGATCGGGATGGGTCCAAGCTCTGACTTCTTGCGATCATCTCGCTTCCTTATCATCCGACCTCGCTCATATTCCGCCCCCTCAGACTCCCTGTAGCCAATGCCAGAATCCCAAGGAGAATTGGGTGTGTTTATGCTGTAAGGATGTCTTTTGTAGTCGTTTTGTGAATAAGCACATGCTTCAACATTATGAGCAATCAACTCATTGTCTTGCACTCAGCTACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGACGCATATTTAGATGCACAAGTGATTCAGGAATTACGACCAGTACACGAAGTTGCCTACATACTGAAATTTGGCGAGGCTCCACCATTTCGATAA

Protein sequence

MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR*

Homology

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BLAST of Csa4G000940 vs. Swiss-Prot
Match: HDAC6_MOUSE (Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3)

HSP 1 Score: 95.9 bits (237), Expect = 3.9e-19
Identity = 55/144 (38.19%), Postives = 71/144 (49.31%), Query Frame = 1


Query: 1    MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
            + E AG     S  LT    D   +++ Y      V  L+ C HL ++    A       
Sbjct: 1011 LGEAAGGQDMNSLMLTQGFGDFNTQDVFYA-----VTPLSWCPHLMAVCPIPAAGLDVSQ 1070

Query: 61   PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
            PC  C   +ENWVCL C  V+CSR+VN HM+ H+E S H L LS  DLS WC+ C AY+ 
Sbjct: 1071 PCKTCGTVQENWVCLTCYQVYCSRYVNAHMVCHHEASEHPLVLSCVDLSTWCYVCQAYVH 1130

Query: 121  AQVIQELRPVHEVAYILKFGEAPP 145
                ++L+ V   A+  KFGE  P
Sbjct: 1131 H---EDLQDVKNAAHQNKFGEDMP 1146

[Close]

BLAST of Csa4G000940 vs. Swiss-Prot
Match: HDAC6_HUMAN (Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 6.7e-19
Identity = 52/144 (36.11%), Postives = 68/144 (47.22%), Query Frame = 1


Query: 1    MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
            + E AG      + L        ++ + Y      V  L  C HL ++    A       
Sbjct: 1077 LGEAAGGQDMADSMLMQGSRGLTDQAIFYA-----VTPLPWCPHLVAVCPIPAAGLDVTQ 1136

Query: 61   PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
            PC  C   +ENWVCL C  V+C R++N HMLQH+  S H L LSY DLS WC+ C AY+ 
Sbjct: 1137 PCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVH 1196

Query: 121  AQVIQELRPVHEVAYILKFGEAPP 145
             Q + +   V  +A+  KFGE  P
Sbjct: 1197 HQALLD---VKNIAHQNKFGEDMP 1212

[Close]

BLAST of Csa4G000940 vs. Swiss-Prot
Match: HDA6_CAEEL (Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=3 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 4.8e-17
Identity = 52/147 (35.37%), Postives = 74/147 (50.34%), Query Frame = 1


Query: 2   AEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQ-- 61
           +  +GSSSS++ P   +       E++    +  V  L +C HL     ++  +PP +  
Sbjct: 822 SSSSGSSSSSTRPSHNL-------EIMDSGPAHAVVPLATCPHL----KEVKPLPPAKIN 881

Query: 62  --TPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDA 121
             T CS+CQ   E W CL C    C RFVN+H + H+  S+H +ALS +DLSVWC+ CD+
Sbjct: 882 ARTACSECQIGAEVWTCLTCYKYNCGRFVNEHAMMHHLSSSHPMALSMADLSVWCYPCDS 941

Query: 122 YLDAQVIQELRPVHEVAYILKFGEAPP 145
           Y+       L      A+  KFGE  P
Sbjct: 942 YVHNPA---LIGAKSAAHESKFGETMP 954

[Close]

BLAST of Csa4G000940 vs. Swiss-Prot
Match: SIR2A_DICDI (NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum GN=sir2A PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-12
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = 1


Query: 60  TPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYL 119
           T C  C +  ENW+C+ C  V CSR VN H  +H+E + H ++ S+SD S WC++CD Y+
Sbjct: 32  TKCHACNDESENWICMTCGVVSCSRHVNGHAGEHFENTKHPISASFSDHSFWCYTCDTYV 91

[Close]

BLAST of Csa4G000940 vs. Swiss-Prot
Match: UBP44_HUMAN (Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens GN=USP44 PE=1 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-11
Identity = 27/84 (32.14%), Postives = 49/84 (58.33%), Query Frame = 1


Query: 38  ALTSCDHLASL--SSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYE 97
           A+ +C H+  L  + D + + P +  C  C   +  W CL C  V C R++ +H L+H++
Sbjct: 3   AMDTCKHVGQLQLAQDHSSLNPQKWHCVDCNTTESIWACLSCSHVACGRYIEEHALKHFQ 62

Query: 98  QSTHCLALSYSDLSVWCFSCDAYL 120
           +S+H +AL  +++ V+C+ CD Y+
Sbjct: 63  ESSHPVALEVNEMYVFCYLCDDYV 86

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BLAST of Csa4G000940 vs. TrEMBL
Match: A0A0A0KT14_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000940 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 5.1e-82
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
           MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT
Sbjct: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60

Query: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
           PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD
Sbjct: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 147
           AQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 AQVIQELRPVHEVAYILKFGEAPPFR 146

[Close]

BLAST of Csa4G000940 vs. TrEMBL
Match: A0A061E839_THECC (Regulator of Vps4 activity in the MVB pathway protein OS=Theobroma cacao GN=TCM_007207 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 4.9e-61
Identity = 108/146 (73.97%), Postives = 129/146 (88.36%), Query Frame = 1


Query: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
           MA++AG+SSS    L +I+E+E + +L+YGA SGWV+A T CDHLASLSSDLAHIP P T
Sbjct: 1   MADQAGASSSH---LKIILEEEDDYDLIYGAESGWVEARTQCDHLASLSSDLAHIPTPNT 60

Query: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
           PC++CQ+P ENW+CLCCKDV CSRFVNKHML+HY+Q+THC+ALSYSDLSVWCF+CD YLD
Sbjct: 61  PCNRCQHPSENWLCLCCKDVLCSRFVNKHMLEHYKQTTHCIALSYSDLSVWCFACDTYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 147
           AQVI++LRPVHE AYILKFGEAPP R
Sbjct: 121 AQVIRQLRPVHETAYILKFGEAPPHR 143

[Close]

BLAST of Csa4G000940 vs. TrEMBL
Match: D7SXS2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g00620 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.3e-57
Identity = 102/141 (72.34%), Postives = 119/141 (84.40%), Query Frame = 1


Query: 5   AGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQ 64
           A  +SS+S  L ++IEDE   E LYGA SGWV+A TSCDHLASLSSDL HIP P+TPC++
Sbjct: 2   ANQASSSSTALEVLIEDE---EFLYGAESGWVEARTSCDHLASLSSDLVHIPTPETPCNR 61

Query: 65  CQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQVI 124
           C NP ENW+CLCCK+V CSRFVNKHML+HY++  HCLALSYSDLS+WCFSCDAYLDAQ I
Sbjct: 62  CHNPSENWLCLCCKEVLCSRFVNKHMLEHYQKVNHCLALSYSDLSIWCFSCDAYLDAQAI 121

Query: 125 QELRPVHEVAYILKFGEAPPF 146
            +L PV+E AYILKFG+APPF
Sbjct: 122 LQLHPVYETAYILKFGQAPPF 139

[Close]

BLAST of Csa4G000940 vs. TrEMBL
Match: M5VQ49_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013008mg PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 5.6e-57
Identity = 107/147 (72.79%), Postives = 122/147 (82.99%), Query Frame = 1


Query: 1   MAEKAGSSSST-SNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQ 60
           MA +AGSSS+  + P       E EEEL++GA SGWV A T CDHL SLS+DLAHIP P 
Sbjct: 1   MAAQAGSSSAAQAEPFV-----ENEEELIFGAESGWVAARTFCDHLPSLSTDLAHIPAPD 60

Query: 61  TPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYL 120
           TPC++CQ+P ENW+CLCCKDV CSRFVNKHMLQH++Q+ HCLALSYSDLSVWCFSCDAYL
Sbjct: 61  TPCNRCQHPNENWLCLCCKDVLCSRFVNKHMLQHFQQTNHCLALSYSDLSVWCFSCDAYL 120

Query: 121 DAQVIQELRPVHEVAYILKFGEAPPFR 147
           DAQVI +LR V+E AYILKFGEAPPFR
Sbjct: 121 DAQVIPQLRGVYETAYILKFGEAPPFR 142

[Close]

BLAST of Csa4G000940 vs. TrEMBL
Match: A0A068TLS8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014541001 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 4.8e-56
Identity = 102/141 (72.34%), Postives = 121/141 (85.82%), Query Frame = 1


Query: 7   SSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQ 66
           SSS  +   + I+E++ +E LLYG+GSGWV+ALT CDHL +LSSDL HIPPP TPC +C+
Sbjct: 2   SSSKEAASSSHIVEEDDDELLLYGSGSGWVEALTHCDHLDTLSSDLTHIPPPDTPCYRCE 61

Query: 67  NPKENWVCLCCKDVFCSRFVNKHMLQHY-EQSTHCLALSYSDLSVWCFSCDAYLDAQVIQ 126
           +P+ENW+CL C+DV CSRFVNKHML+HY +Q+ HCLALSYSDLSVWCFSCDAYLDAQVI 
Sbjct: 62  HPQENWLCLSCEDVLCSRFVNKHMLEHYRQQNNHCLALSYSDLSVWCFSCDAYLDAQVIL 121

Query: 127 ELRPVHEVAYILKFGEAPPFR 147
            LRPV+E AYILKFGEAPPFR
Sbjct: 122 PLRPVYETAYILKFGEAPPFR 142

[Close]

BLAST of Csa4G000940 vs. TAIR10
Match: AT2G14830.1 (AT2G14830.1 Regulator of Vps4 activity in the MVB pathway protein)

HSP 1 Score: 72.4 bits (176), Expect = 2.6e-13
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1


Query: 1  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
          MAEKA SSSS+S+P    + DE ++ +L GAGSGWV+A  +CDHL +LS DL H+P P T
Sbjct: 1  MAEKAPSSSSSSSP-PKEVADETQDWIL-GAGSGWVEARKTCDHLNTLSPDLLHLPTPDT 60

Query: 61 PCSQ 65
          PCS+
Sbjct: 61 PCSR 62

[Close]

BLAST of Csa4G000940 vs. NCBI nr
Match: gi|449469124|ref|XP_004152271.1| (PREDICTED: histone deacetylase 6 [Cucumis sativus])

HSP 1 Score: 311.6 bits (797), Expect = 7.3e-82
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
           MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT
Sbjct: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60

Query: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
           PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD
Sbjct: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 147
           AQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 AQVIQELRPVHEVAYILKFGEAPPFR 146

[Close]

BLAST of Csa4G000940 vs. NCBI nr
Match: gi|659108780|ref|XP_008454385.1| (PREDICTED: histone deacetylase 6 [Cucumis melo])

HSP 1 Score: 298.5 bits (763), Expect = 6.4e-78
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 1


Query: 1   MAEKAGSSSSTSNPLTLIIE--DEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
           MAE+AGSSSSTSN L LIIE  DEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  QTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120
           QTPCSQCQNPKENW+CLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 147
           LDAQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148

[Close]

BLAST of Csa4G000940 vs. NCBI nr
Match: gi|590687256|ref|XP_007042612.1| (Regulator of Vps4 activity in the MVB pathway protein [Theobroma cacao])

HSP 1 Score: 241.9 bits (616), Expect = 7.1e-61
Identity = 108/146 (73.97%), Postives = 129/146 (88.36%), Query Frame = 1


Query: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
           MA++AG+SSS    L +I+E+E + +L+YGA SGWV+A T CDHLASLSSDLAHIP P T
Sbjct: 1   MADQAGASSSH---LKIILEEEDDYDLIYGAESGWVEARTQCDHLASLSSDLAHIPTPNT 60

Query: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
           PC++CQ+P ENW+CLCCKDV CSRFVNKHML+HY+Q+THC+ALSYSDLSVWCF+CD YLD
Sbjct: 61  PCNRCQHPSENWLCLCCKDVLCSRFVNKHMLEHYKQTTHCIALSYSDLSVWCFACDTYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 147
           AQVI++LRPVHE AYILKFGEAPP R
Sbjct: 121 AQVIRQLRPVHETAYILKFGEAPPHR 143

[Close]

BLAST of Csa4G000940 vs. NCBI nr
Match: gi|657962890|ref|XP_008373046.1| (PREDICTED: histone deacetylase 6 [Malus domestica])

HSP 1 Score: 237.3 bits (604), Expect = 1.7e-59
Identity = 110/146 (75.34%), Postives = 123/146 (84.25%), Query Frame = 1


Query: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
           MA +AGSSS+  +        E EE+L YGA SGWV+A TSCDHLASLSSDLAHIP P T
Sbjct: 1   MAAQAGSSSAQEDQFL-----ENEEDLFYGAESGWVEARTSCDHLASLSSDLAHIPTPDT 60

Query: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
            C++CQ+P ENW+CLCCKDV CSRFVNKHMLQHY+QS HCLALSYSDLSVWCFSCDAYLD
Sbjct: 61  ACNRCQHPNENWLCLCCKDVLCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 147
           AQ+I +LRPV+E AYILKFGEAPPFR
Sbjct: 121 AQLIPQLRPVYETAYILKFGEAPPFR 141

[Close]

BLAST of Csa4G000940 vs. NCBI nr
Match: gi|694414340|ref|XP_009335394.1| (PREDICTED: histone deacetylase 6-like [Pyrus x bretschneideri])

HSP 1 Score: 236.5 bits (602), Expect = 3.0e-59
Identity = 110/146 (75.34%), Postives = 123/146 (84.25%), Query Frame = 1


Query: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
           MA +AGSSS+  +        E EE+L YGA SGWV+A TSCDHLASLSSDLAHIP P T
Sbjct: 1   MAAQAGSSSAQEDQFL-----ENEEDLFYGAESGWVEARTSCDHLASLSSDLAHIPIPDT 60

Query: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
            C++CQ+P ENW+CLCCKDV CSRFVNKHMLQHY+QS HCLALSYSDLSVWCFSCDAYLD
Sbjct: 61  ACNRCQHPNENWLCLCCKDVLCSRFVNKHMLQHYQQSNHCLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 147
           AQ+I +LRPV+E AYILKFGEAPPFR
Sbjct: 121 AQLIPQLRPVYETAYILKFGEAPPFR 141

The following BLAST results are available for this feature:

BLAST of Csa4G000940 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HDAC6_MOUSE	3.9e-19	38.19	Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3	[more]
HDAC6_HUMAN	6.7e-19	36.11	Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2	[more]
HDA6_CAEEL	4.8e-17	35.37	Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=3 SV=2	[more]
SIR2A_DICDI	2.7e-12	45.00	NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum GN=sir2A PE=2 SV=1	[more]
UBP44_HUMAN	1.3e-11	32.14	Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens GN=USP44 PE=1 SV=2	[more]

BLAST of Csa4G000940 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT14_CUCSA	5.1e-82	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000940 PE=4 SV=1	[more]
A0A061E839_THECC	4.9e-61	73.97	Regulator of Vps4 activity in the MVB pathway protein OS=Theobroma cacao GN=TCM_...	[more]
D7SXS2_VITVI	3.3e-57	72.34	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g00620 PE=4 SV=...	[more]
M5VQ49_PRUPE	5.6e-57	72.79	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013008mg PE=4 SV=1	[more]
A0A068TLS8_COFCA	4.8e-56	72.34	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014541001 PE=4 SV=1	[more]

BLAST of Csa4G000940 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14830.1	2.6e-13	57.81	Regulator of Vps4 activity in the MVB pathway protein	[more]

BLAST of Csa4G000940 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469124\|ref\|XP_004152271.1\|	7.3e-82	100.00	PREDICTED: histone deacetylase 6 [Cucumis sativus]	[more]
gi\|659108780\|ref\|XP_008454385.1\|	6.4e-78	95.95	PREDICTED: histone deacetylase 6 [Cucumis melo]	[more]
gi\|590687256\|ref\|XP_007042612.1\|	7.1e-61	73.97	Regulator of Vps4 activity in the MVB pathway protein [Theobroma cacao]	[more]
gi\|657962890\|ref\|XP_008373046.1\|	1.7e-59	75.34	PREDICTED: histone deacetylase 6 [Malus domestica]	[more]
gi\|694414340\|ref\|XP_009335394.1\|	3.0e-59	75.34	PREDICTED: histone deacetylase 6-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000286	His_deacetylse
IPR001607	Znf_UBP
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0070461	SAGA-type complex
molecular_function	GO:0008270	zinc ion binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU101660	cucumber EST collection version 3.0	transcribed_cluster
CU115533	cucumber EST collection version 3.0	transcribed_cluster
CU128469	cucumber EST collection version 3.0	transcribed_cluster
CU139151	cucumber EST collection version 3.0	transcribed_cluster
CU158324	cucumber EST collection version 3.0	transcribed_cluster
CU166934	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G000940.1	Csa4G000940.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU158324	CU158324	transcribed_cluster
CU115533	CU115533	transcribed_cluster
CU139151	CU139151	transcribed_cluster
CU128469	CU128469	transcribed_cluster
CU166934	CU166934	transcribed_cluster
CU101660	CU101660	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000286	Histone deacetylase superfamily	PANTHER	PTHR10625	HISTONE DEACETYLASE	coord: 17..144 score: 3.0
IPR001607	Zinc finger, UBP-type	PFAM	PF02148	zf-UBP	coord: 62..120 score: 4.9
IPR001607	Zinc finger, UBP-type	SMART	SM00290	Zf_UBP_1	coord: 61..110 score: 8.8
IPR001607	Zinc finger, UBP-type	PROFILE	PS50271	ZF_UBP	coord: 60..121 score: 17
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 40..128 score: 2.5
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 40..132 score: 4.47

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G000940	MELO3C017992	Melon (DHL92) v3.5.1	cumeB312
Csa4G000940	ClCG10G010510	Watermelon (Charleston Gray)	cuwcgB271
Csa4G000940	MELO3C017992.2	Melon (DHL92) v3.6.1	cumedB297
Csa4G000940	Cla97C10G193440	Watermelon (97103) v2	cuwmbB271
Csa4G000940	Bhi11G000960	Wax gourd	cuwgoB356
Csa4G000940	CSPI04G00480	Wild cucumber (PI 183967)	cpicuB182
Csa4G000940	CmaCh04G004550	Cucurbita maxima (Rimu)	cmacuB709
Csa4G000940	CmoCh04G004870	Cucurbita moschata (Rifu)	cmocuB701
Csa4G000940	Cp4.1LG01g02650	Cucurbita pepo (Zucchini)	cpecuB402
Csa4G000940	CsGy4G000410	Cucumber (Gy14) v2	cgybcuB165
Csa4G000940	Carg08126	Silver-seed gourd	carcuB0402

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G000940	Silver-seed gourd	carcuB0322
Csa4G000940	Cucumber (Chinese Long) v2	cucuB135
Csa4G000940	Cucumber (Chinese Long) v2	cucuB152
Csa4G000940	Cucumber (Gy14) v1	cgycuB102
Csa4G000940	Cucumber (Gy14) v1	cgycuB495
Csa4G000940	Cucurbita maxima (Rimu)	cmacuB333
Csa4G000940	Cucurbita moschata (Rifu)	cmocuB322
Csa4G000940	Watermelon (97103) v1	cuwmB290
Csa4G000940	Cucurbita pepo (Zucchini)	cpecuB219
Csa4G000940	Bottle gourd (USVL1VR-Ls)	culsiB275
Csa4G000940	Cucumber (Gy14) v2	cgybcuB176