CsGy4G000410 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G000410
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	histone deacetylase 6
Location	Chr4 : 258671 .. 260502 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAAAAAGCCGGTTCATCTTCTTCCACTTCCAACCCACTGGTACCCTAATCAAACTCATTCCTTCATGTTCTCTTTGATTGCCCCAATAATTCCTACTTCTTTTCTATATTTCTATCTATTTATTGAATCGCTGATTTTGTCTAATGTTGTTTTACGTCTTCTCTAGACACTAATAATCGAAGATGAAGTTGAGGAAGAACTTTTATACGGTGCCGGATCGGGATGGGTCCAAGCTCTGACTTCTTGCGATCATCTCGCTTCCTTATCATCCGACCTCGCTCATATTCCGCCCCCTCAGACTCCCTGTAGCCAGTCAGCTTTTCTTTTCCCTAAACTATGTCTTTAATTCTTATGTTGTTCTTCATCTTAATTTTCGAATGTGTGTACCTTTTCAGTTTCATTTCTATTTCTCCTGAAGGAAGATGTGCTAATTTGATGTTTTGATTCTTTGAGATTTTGCTCCATCAATCGAATTCTTATTGTTTTTGGCTGATAGTTGGTTTAAATCCTCTTTTAGAACTTAAATTTTAATCCCTAAACTTTCATTAAATCCTAATAAGTTAATCGAAATGAATTGAACTCCTGACTTAAATCAAAGTCATGTGGTATTTATTATTAGGCCAACCCATGATATTGATGGTTATCTGAAAGATCAGTCTTTTTAATATGAACAGTAAAGATTTAAAATTAAGTTTTCGGAATGGAGATTTAAAATTAAGTTTTCGGAATGGAGGCTTTTAAGCACAAGATGTTGTCTTTACCACTAAGGCTATCCTTTGAAGTTAGTGTTCCACTGATATCATGCAAAAAAATTGAAGTTCTTCCATTTCAGCTAGACATCTTCTTTCAGTGGCTCTATATCAGTACATTAGATGTTTTATAATCATAACATCCACACCAAAGTCGAGTTCTTTTCTGTCTATTTTTCTATGAATTGTACTTGACGTATTATTTCGTCTAATTTTATAGTGCTTTCAGATGGATTGTCGTGTTTTTATTTGGGCTTATTTCCATGATTTGGATAAACGCATTTCTATTTGGTTTATTAATCCATGGAACAATCTACATATGCAAGATGCCAGAATCCCAAGGAGAATTGGGTGTGTTTATGCTGTAAGGATGTCTTTTGTAGTCGTTTTGTGAATAAGCACATGCTTCAACATTATGAGCAATCAACTCATTGTCTTGCACTCAGCTACAGGTGAATGTAAAATGGTTCCTTAGATTCTACTCTAATTATGAACATAGGTTTGTGATGTTCATTAATAATTTGCATTTGGAAACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGACGCATATTTAGATGCACAAGTGATTCAGGAATTACGACCAGTACACGAAGTTGCCTACATACTGAAATTTGGCGAGGCTCCACCATTTCGATAATATCAATCATCCTGCACTGGGGGAACTGAAATATCTGATTATTAGTGTTATAACTTTTCCAGTCTCTACTTATTAGATGTTTTGATTTCTTGGTCTGTATATGTCAAGCAAATGGCTTATGATCTTCACATGAATTAGGTTGGGTTGTCAAATGTTCATGGTAATTTGGTTGTTCACTTTACAGAAGTGAGGGATAGATTAGAATCTCATATCTTGTTCAAGAAAATTTTAAGAAGCTTTTACTTGAAAATGACAAAATTCTTGTTTCAAACCTTGATGATAACATGAATGAAATTGGTTCCCAACTTTTGTCACTCATCATTTTTCGCAGATGTTGGCGTTTTGGCCCGAAGAAACTTCGCTTCTACTTTGGTTGCAAAGAAAACTCGACACAGCTTCATTTTATCTTATTTTGA

mRNA sequence

ATGGCGGAAAAAGCCGGTTCATCTTCTTCCACTTCCAACCCACTGACACTAATAATCGAAGATGAAGTTGAGGAAGAACTTTTATACGGTGCCGGATCGGGATGGGTCCAAGCTCTGACTTCTTGCGATCATCTCGCTTCCTTATCATCCGACCTCGCTCATATTCCGCCCCCTCAGACTCCCTGTAGCCAATGTTGGCGTTTTGGCCCGAAGAAACTTCGCTTCTACTTTGGTTGCAAAGAAAACTCGACACAGCTTCATTTTATCTTATTTTGA

Coding sequence (CDS)

ATGGCGGAAAAAGCCGGTTCATCTTCTTCCACTTCCAACCCACTGACACTAATAATCGAAGATGAAGTTGAGGAAGAACTTTTATACGGTGCCGGATCGGGATGGGTCCAAGCTCTGACTTCTTGCGATCATCTCGCTTCCTTATCATCCGACCTCGCTCATATTCCGCCCCCTCAGACTCCCTGTAGCCAATGTTGGCGTTTTGGCCCGAAGAAACTTCGCTTCTACTTTGGTTGCAAAGAAAACTCGACACAGCTTCATTTTATCTTATTTTGA

Protein sequence

MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCWRFGPKKLRFYFGCKENSTQLHFILF

Homology

[Close]

BLAST of CsGy4G000410 vs. NCBI nr
Match: XP_004152271.1 (PREDICTED: histone deacetylase 6 [Cucumis sativus] >KGN52775.1 hypothetical protein Csa_4G000940 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 3.9e-29
Identity = 69/81 (85.19%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
          MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT
Sbjct: 1  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60

Query: 61 PCSQCWRFGPKKLRFYFGCKE 82
          PCSQC    PK+      CK+
Sbjct: 61 PCSQCQ--NPKENWVCLCCKD 79

[Close]

BLAST of CsGy4G000410 vs. NCBI nr
Match: XP_008454385.1 (PREDICTED: histone deacetylase 6 [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-25
Identity = 66/83 (79.52%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1  MAEKAGSSSSTSNPLTLI--IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
          MAE+AGSSSSTSN L LI  IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP
Sbjct: 1  MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61 QTPCSQCWRFGPKKLRFYFGCKE 82
          QTPCSQC    PK+      CK+
Sbjct: 61 QTPCSQCQ--NPKENWLCLCCKD 81

[Close]

BLAST of CsGy4G000410 vs. NCBI nr
Match: EOX98443.1 (Regulator of Vps4 activity in the MVB pathway protein [Theobroma cacao])

HSP 1 Score: 87.4 bits (215), Expect = 2.7e-14
Identity = 41/65 (63.08%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
          MA++AG+SSS    L +I+E+E + +L+YGA SGWV+A T CDHLASLSSDLAHIP P T
Sbjct: 1  MADQAGASSS---HLKIILEEEDDYDLIYGAESGWVEARTQCDHLASLSSDLAHIPTPNT 60

Query: 61 PCSQC 66
          PC++C
Sbjct: 61 PCNRC 62

[Close]

BLAST of CsGy4G000410 vs. NCBI nr
Match: XP_017972063.1 (PREDICTED: histone deacetylase 6 [Theobroma cacao])

HSP 1 Score: 87.4 bits (215), Expect = 2.7e-14
Identity = 41/65 (63.08%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
          MA++AG+SSS    L +I+E+E + +L+YGA SGWV+A T CDHLASLSSDLAHIP P T
Sbjct: 1  MADQAGASSS---HLKIILEEEDDYDLIYGAESGWVEARTQCDHLASLSSDLAHIPTPNT 60

Query: 61 PCSQC 66
          PC++C
Sbjct: 61 PCNRC 62

[Close]

BLAST of CsGy4G000410 vs. NCBI nr
Match: XP_010647929.1 (PREDICTED: histone deacetylase 6 [Vitis vinifera] >CBI22472.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 85.9 bits (211), Expect = 7.8e-14
Identity = 44/77 (57.14%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 5  AGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQ 64
          A  +SS+S  L ++IED   EE LYGA SGWV+A TSCDHLASLSSDL HIP P+TPC++
Sbjct: 2  ANQASSSSTALEVLIED---EEFLYGAESGWVEARTSCDHLASLSSDLVHIPTPETPCNR 61

Query: 65 CWRFGPKKLRFYFGCKE 82
          C    P +      CKE
Sbjct: 62 C--HNPSENWLCLCCKE 73

[Close]

BLAST of CsGy4G000410 vs. TAIR10
Match: AT2G14830.1 (Regulator of Vps4 activity in the MVB pathway protein)

HSP 1 Score: 60.5 bits (145), Expect = 6.4e-10
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 1  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
          MAEKA  S          + DE ++ +L GAGSGWV+A  +CDHL +LS DL H+P P T
Sbjct: 1  MAEKA-PSXXXXXXXXKEVADETQDWIL-GAGSGWVEARKTCDHLNTLSPDLLHLPTPDT 60

Query: 61 PCSQ 65
          PCS+
Sbjct: 61 PCSR 62

[Close]

BLAST of CsGy4G000410 vs. TrEMBL
Match: tr|A0A0A0KT14|A0A0A0KT14_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000940 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.5e-29
Identity = 69/81 (85.19%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
          MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT
Sbjct: 1  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60

Query: 61 PCSQCWRFGPKKLRFYFGCKE 82
          PCSQC    PK+      CK+
Sbjct: 61 PCSQCQ--NPKENWVCLCCKD 79

[Close]

BLAST of CsGy4G000410 vs. TrEMBL
Match: tr|A0A1S3BZ94|A0A1S3BZ94_CUCME (histone deacetylase 6 OS=Cucumis melo OX=3656 GN=LOC103494801 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.7e-26
Identity = 66/83 (79.52%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 1  MAEKAGSSSSTSNPLTLI--IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
          MAE+AGSSSSTSN L LI  IEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP
Sbjct: 1  MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61 QTPCSQCWRFGPKKLRFYFGCKE 82
          QTPCSQC    PK+      CK+
Sbjct: 61 QTPCSQCQ--NPKENWLCLCCKD 81

[Close]

BLAST of CsGy4G000410 vs. TrEMBL
Match: tr|A0A061E839|A0A061E839_THECC (Regulator of Vps4 activity in the MVB pathway protein OS=Theobroma cacao OX=3641 GN=TCM_007207 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-14
Identity = 41/65 (63.08%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
          MA++AG+SSS    L +I+E+E + +L+YGA SGWV+A T CDHLASLSSDLAHIP P T
Sbjct: 1  MADQAGASSS---HLKIILEEEDDYDLIYGAESGWVEARTQCDHLASLSSDLAHIPTPNT 60

Query: 61 PCSQC 66
          PC++C
Sbjct: 61 PCNRC 62

[Close]

BLAST of CsGy4G000410 vs. TrEMBL
Match: tr|D7SXS2|D7SXS2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_03s0091g00620 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.2e-14
Identity = 44/77 (57.14%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 5  AGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQ 64
          A  +SS+S  L ++IED   EE LYGA SGWV+A TSCDHLASLSSDL HIP P+TPC++
Sbjct: 2  ANQASSSSTALEVLIED---EEFLYGAESGWVEARTSCDHLASLSSDLVHIPTPETPCNR 61

Query: 65 CWRFGPKKLRFYFGCKE 82
          C    P +      CKE
Sbjct: 62 C--HNPSENWLCLCCKE 73

[Close]

BLAST of CsGy4G000410 vs. TrEMBL
Match: tr|A9PBR2|A9PBR2_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G090100v3 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.7e-13
Identity = 45/81 (55.56%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 1  MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
          MA +AG+SSS   PL    ED  +E  +YGA SGWV+A TSCDHLASLSSDLAHIP P T
Sbjct: 1  MANQAGASSSA--PLEPGFED--DENDMYGAESGWVEARTSCDHLASLSSDLAHIPTPDT 60

Query: 61 PCSQCWRFGPKKLRFYFGCKE 82
          PC++C    P +      CK+
Sbjct: 61 PCNRCQH--PSENWLCLSCKD 75

The following BLAST results are available for this feature:

BLAST of CsGy4G000410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152271.1	3.9e-29	85.19	PREDICTED: histone deacetylase 6 [Cucumis sativus] >KGN52775.1 hypothetical prot...	[more]
XP_008454385.1	1.2e-25	79.52	PREDICTED: histone deacetylase 6 [Cucumis melo]	[more]
EOX98443.1	2.7e-14	63.08	Regulator of Vps4 activity in the MVB pathway protein [Theobroma cacao]	[more]
XP_017972063.1	2.7e-14	63.08	PREDICTED: histone deacetylase 6 [Theobroma cacao]	[more]
XP_010647929.1	7.8e-14	57.14	PREDICTED: histone deacetylase 6 [Vitis vinifera] >CBI22472.3 unnamed protein pr...	[more]

BLAST of CsGy4G000410 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14830.1	6.4e-10	50.00	Regulator of Vps4 activity in the MVB pathway protein	[more]

BLAST of CsGy4G000410 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G000410 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KT14\|A0A0A0KT14_CUCSA	2.5e-29	85.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000940 PE=4 SV=1	[more]
tr\|A0A1S3BZ94\|A0A1S3BZ94_CUCME	7.7e-26	79.52	histone deacetylase 6 OS=Cucumis melo OX=3656 GN=LOC103494801 PE=4 SV=1	[more]
tr\|A0A061E839\|A0A061E839_THECC	1.8e-14	63.08	Regulator of Vps4 activity in the MVB pathway protein OS=Theobroma cacao OX=3641...	[more]
tr\|D7SXS2\|D7SXS2_VITVI	5.2e-14	57.14	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_03s0091g00620 PE=4 SV=...	[more]
tr\|A9PBR2\|A9PBR2_POPTR	9.7e-13	55.56	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G090100v3 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G000410.1	CsGy4G000410.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G000410	Csa4G000940	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G000410	MELO3C017992	Melon (DHL92) v3.5.1	cgybmeB269
CsGy4G000410	ClCG10G010510	Watermelon (Charleston Gray)	cgybwcgB251
CsGy4G000410	CSPI04G00480	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G000410	CmaCh04G004550	Cucurbita maxima (Rimu)	cgybcmaB543
CsGy4G000410	CmoCh04G004870	Cucurbita moschata (Rifu)	cgybcmoB517
CsGy4G000410	Cp4.1LG01g02650	Cucurbita pepo (Zucchini)	cgybcpeB504
CsGy4G000410	MELO3C017992.2	Melon (DHL92) v3.6.1	cgybmedB266
CsGy4G000410	CsaV3_4G000430	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G000410	Cla97C10G193440	Watermelon (97103) v2	cgybwmbB259
CsGy4G000410	Bhi11G000960	Wax gourd	cgybwgoB342
CsGy4G000410	Carg08126	Silver-seed gourd	carcgybB0383

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G000410	Cucumber (Gy14) v2	cgybcgybB122
CsGy4G000410	Cucurbita maxima (Rimu)	cgybcmaB494
CsGy4G000410	Cucurbita moschata (Rifu)	cgybcmoB465
CsGy4G000410	Cucurbita pepo (Zucchini)	cgybcpeB485
CsGy4G000410	Cucumber (Chinese Long) v2	cgybcuB177
CsGy4G000410	Bottle gourd (USVL1VR-Ls)	cgyblsiB257
CsGy4G000410	Melon (DHL92) v3.5.1	cgybmeB267
CsGy4G000410	Watermelon (97103) v1	cgybwmB269
CsGy4G000410	Wild cucumber (PI 183967)	cgybcpiB178
CsGy4G000410	Silver-seed gourd	carcgybB0309
CsGy4G000410	Cucumber (Chinese Long) v3	cgybcucB193
CsGy4G000410	Cucumber (Chinese Long) v3	cgybcucB177