Carg08126 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08126
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Histone deacetylase
Location	Cucurbita_argyrosperma_scaffold_050 : 874811 .. 877404 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAACGAAGCCGGCTCCTCCTCCTCCAACCCAGCGGTATCGTAATTAGAACACTCCGGCCAGTTCTCTTCGAGTCGCCGGAAAATATCCTAGTTCCTATTTTTCTTTTGTCGCTGTTGAATTGAATCGGTGATCTTGGCTAAAATGTTGTTTTCATCTTCTCTAGCCATGCGTAATCGAAGAGGAAGTTGGAGAAGAGTTCTTGTACGGTGCTGAATCGGGATGGGTCGAAGCTTTGACTTCTTGTGATCATCTTCCTTCGCTGTGTTCCGACCTTGCTCATATTCCACCCCCTGATACTGCCTGCTGCGAGTCAGTTTTTCTATACCCTAAACCGTGTGTGTAGTTCCTTTTTCAGTGGGGTTTTCATTTCTGCTGTGGACATTGCTGAAGGGTTATGTGCTTAATTTTTGTTTGATTTGAGAACTTCTTTGTGAGACAGTTTAGAATGATGTCTTCTTTGTGGATTGTGGGTTTGAATCTCCTTGGGTATCTATGAAGACTCTGAAATATGGTATCCACCCCAAAGTTTTAGGTTAAGGTCTAGAAAACTGGCCATGTTCTTCTTCCTAGATTCAAATAGGAAATCAGAACTGAATTTCCTTTCTTCTAATGCTTTGCTATTTTCAAGGAACAAAATAGGGTAGAAATATGGTATAAGTTAAGCTATTTGTTTGTGTATGCTGTATTGTGGGATCCACATCGGTTGGAGAAGAAAACGAAGCATTTTTTGTAAGGGTGTGGAGACTTTTCCTTAGCAAACGCATTTTAAAAACCTCGAGGGAAAGTCCGAAAAGGATAATATCTGCTAGCGGTGGGCTTGGGCCGTTACATTGTTTTCCTCCCATCTATTCGTGAGTAGATTAGATTTCCTCATACCTTGCATGAACAGCTTACTAGATTTTCATCTCAATGAGGCTATTGTGATTTATGAAACATGGCAATACGTGAAAATATAGTAATGCCTTTAATGTATCGTGGACTTTCCTCTTATGCTGGCTTAGATTTGGTTTATCAGAGAATTGTTTTCTTACCTAAATTATTTTTGACGAATCTTAGATATCTGGAGGCTCCCCTCCCTGCAATTATGTTCATAGTCACCTCCACTAATCCTTAGGAGTCAACACCCACTCCAAGAGACAATAAAGATTTTAAATTTATTGTCTACATGGAGGCTTTAAAACCAAGATCTCGTTTATATGACAGCAAGTGGAGTGCATAAGCCTCTCTAGAGATAGGGGTGAGTACTACGTTAAGTACGGAACGAGCCTTGTCTACAAACTTTAGAAATAGGGGCGAAGCAGCTCGACCGATAGGGAGAGGGTTGACCTCATCTTGCTTGCTTTTGGTGAAACTTAACACACTAGATGATCAGCATTCTTTAGTAGGAATACGACTTTTTAGGCCAACCACAATAAATATCATAAGCAATAGTGAAGCCAAGCCAGATAAAGGCGAGGAGCCCAACTAGCAATAGCAAACAGCCTTCTTATAGCCTCTTTTTCCCTTTACTTCCTATTATCCCTTAAAGCTAGCCTTTACCACTAAGGTCACCATCGGAAGTTAGTATTCCATTGCTGCCGTACATTAAAGGTTTAAGTTCTTCATGTCATTCCCAAAAGATCTTGAAGGATATATTTCAAAATTTCAAGCATTTACCACTAAGGCAGCCACCATTGGAAGTTAGTATTCCATTGATATCATATATAAATGATTCAAGTAAATCCATTTCAGCTGGACATCTCTTTAGATGGTCTGTACGAGTCTAATATAAGTAGATGTTTTGGTATCTTAACTTTACAAGTGGTGTATAATTTTCGGTCTGTAAGTGCCTTCAGACCCATTTTTATGTTTCTGTTTGGTTTCAGTTTCATGATTTGGAAAACGCCTATTTATTTGGTTTATTAATCCATAGAACAATCTACTTATGCAAGATGTGAGAATCCCAAGGAGAACTGGTTGTGTTTATGCTGTAAGAATGTCTTCTGTAGTCGTTTTGTGAACAAGCACATGCTTCAACATTATCAGCAATCAAATCATAGTCTTGCACTCAGCTACAGGTAAATGTAAAATGGTTCCTTAATGATACTTTACTTTCTGCTCTTAAGGTTCCTCGATGCCTTGTTTATTAACAATTTGCATTTGGAAACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGATGCATATTTAGATGCGCAACTGATCCAGGAATTACGACCAGTACACGAAGTTGCCTATATACTAAAATTCGGCGAGGCCCCGCCATTTCGATAGGCTTAATCTTCCTGCAGGGAGACTTAAATTTGAGACTTGTGTTGTAATTTTTATAGTCTTGATATCTTTAGGTGTCTTGGTCTCTTAGTTTGAGGAAGTGAGCATTTCAAAATGTGATGTTCTTCACATGAATTGGGTTGAGCTTGTCAGAGGTTCATGATGGGTTGCTGATTGTTTCTTTTACAGAGATACGAGGGACAAAAAGTTGGAATCTCCTATCTTGTTCAGGAAAATTTTAGGGACTTCTTACAAATCTTGATGATAAATCAAATTGGTTCTCACAGTTTCAACTATCTAGCAAAATATATCTCTTTT

mRNA sequence

ATGGCAAACGAAGCCGGCTCCTCCTCCTCCAACCCAGCGCCATGCGTAATCGAAGAGGAAGTTGGAGAAGAGTTCTTGTACGGTGCTGAATCGGGATGGGTCGAAGCTTTGACTTCTTGTGATCATCTTCCTTCGCTGTGTTCCGACCTTGCTCATATTCCACCCCCTGATACTGCCTGCTGCGAGTCATTTCATGATTTGGAAAACGCCTATTTATTTGAACAATCTACTTATGCAAGATGTGAGAATCCCAAGGAGAACTGGTTGTGTTTATGCTGTAAGAATGTCTTCTGTAGTCGTTTTGTGAACAAGCACATGCTTCAACATTATCAGCAATCAAATCATAGTCTTGCACTCAGCTACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGATGCATATTTAGATGCGCAACTGATCCAGGAATTACGACCAGTACACGAAGTTGCCTATATACTAAAATTCGGCGAGGCCCCGCCATTTCGATAGGCTTAATCTTCCTGCAGGGAGACTTAAATTTGAGACTTGTGTTGTAATTTTTATAGTCTTGATATCTTTAGGTGTCTTGGTCTCTTAGTTTGAGGAAGTGAGCATTTCAAAATGTGATGTTCTTCACATGAATTGGGTTGAGCTTGTCAGAGGTTCATGATGGGTTGCTGATTGTTTCTTTTACAGAGATACGAGGGACAAAAAGTTGGAATCTCCTATCTTGTTCAGGAAAATTTTAGGGACTTCTTACAAATCTTGATGATAAATCAAATTGGTTCTCACAGTTTCAACTATCTAGCAAAATATATCTCTTTT

Coding sequence (CDS)

ATGGCAAACGAAGCCGGCTCCTCCTCCTCCAACCCAGCGCCATGCGTAATCGAAGAGGAAGTTGGAGAAGAGTTCTTGTACGGTGCTGAATCGGGATGGGTCGAAGCTTTGACTTCTTGTGATCATCTTCCTTCGCTGTGTTCCGACCTTGCTCATATTCCACCCCCTGATACTGCCTGCTGCGAGTCATTTCATGATTTGGAAAACGCCTATTTATTTGAACAATCTACTTATGCAAGATGTGAGAATCCCAAGGAGAACTGGTTGTGTTTATGCTGTAAGAATGTCTTCTGTAGTCGTTTTGTGAACAAGCACATGCTTCAACATTATCAGCAATCAAATCATAGTCTTGCACTCAGCTACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGATGCATATTTAGATGCGCAACTGATCCAGGAATTACGACCAGTACACGAAGTTGCCTATATACTAAAATTCGGCGAGGCCCCGCCATTTCGATAG

Protein sequence

MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR

Homology

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BLAST of Carg08126 vs. NCBI nr
Match: XP_022942503.1 (BTB/POZ domain-containing protein NPY2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 258.1 bits (658), Expect = 2.0e-65
Identity = 124/156 (79.49%), Postives = 128/156 (82.05%), Query Frame = 0


Query: 7   SSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCESFHD 66
           S SS P      +++ +EFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCE    
Sbjct: 488 SGSSTPELPKGVKDLTKEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACCE---- 547

Query: 67  LENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSV 126
                         CENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSV
Sbjct: 548 --------------CENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSV 607

Query: 127 WCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR 163
           WCFSCDAYLDAQLIQELRPVHEVAYILKFGE PPFR
Sbjct: 608 WCFSCDAYLDAQLIQELRPVHEVAYILKFGEVPPFR 625

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BLAST of Carg08126 vs. NCBI nr
Match: XP_022149228.1 (histone deacetylase 6 [Momordica charantia])

HSP 1 Score: 255.4 bits (651), Expect = 1.3e-64
Identity = 125/162 (77.16%), Postives = 132/162 (81.48%), Query Frame = 0


Query: 1   MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTAC 60
           MANEAGSSSSN  PC+IEEE GEE L+GAE+GWVEALT CDHL SL SDLAHIP PDTAC
Sbjct: 1   MANEAGSSSSNLPPCIIEEE-GEEQLFGAEAGWVEALTYCDHLASLSSDLAHIPTPDTAC 60

Query: 61  CESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALS 120
            E                  C+NPKENWLCLCCKN+ CSRFVNKHMLQHYQQS H LALS
Sbjct: 61  SE------------------CQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALS 120

Query: 121 YSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR 163
           YSDLSVWCFSCDAYLDAQ+IQELRPV+EVAYILKFGEAPPFR
Sbjct: 121 YSDLSVWCFSCDAYLDAQVIQELRPVYEVAYILKFGEAPPFR 143

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BLAST of Carg08126 vs. NCBI nr
Match: XP_004152271.1 (PREDICTED: histone deacetylase 6 [Cucumis sativus] >KGN52775.1 hypothetical protein Csa_4G000940 [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 4.7e-62
Identity = 120/164 (73.17%), Postives = 131/164 (79.88%), Query Frame = 0


Query: 1   MANEAGSSS--SNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDT 60
           MA +AGSSS  SNP   +IE+EV EE LYGA SGWV+ALTSCDHL SL SDLAHIPPP T
Sbjct: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60

Query: 61  ACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLA 120
            C                  ++C+NPKENW+CLCCK+VFCSRFVNKHMLQHY+QS H LA
Sbjct: 61  PC------------------SQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLA 120

Query: 121 LSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR 163
           LSYSDLSVWCFSCDAYLDAQ+IQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR 146

[Close]

BLAST of Carg08126 vs. NCBI nr
Match: XP_008454385.1 (PREDICTED: histone deacetylase 6 [Cucumis melo])

HSP 1 Score: 244.6 bits (623), Expect = 2.3e-61
Identity = 122/166 (73.49%), Postives = 131/166 (78.92%), Query Frame = 0


Query: 1   MANEAGSSS--SNPAPCV--IEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPP 60
           MA EAGSSS  SN  P +  IE+EV EE LYGA SGWV+ALTSCDHL SL SDLAHIPPP
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  DTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHS 120
            T C                  ++C+NPKENWLCLCCK+VFCSRFVNKHMLQHY+QS H 
Sbjct: 61  QTPC------------------SQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHC 120

Query: 121 LALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR 163
           LALSYSDLSVWCFSCDAYLDAQ+IQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR 148

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BLAST of Carg08126 vs. NCBI nr
Match: XP_008373046.1 (PREDICTED: histone deacetylase 6 [Malus domestica] >XP_008356371.1 PREDICTED: histone deacetylase 6-like [Malus domestica])

HSP 1 Score: 224.9 bits (572), Expect = 1.9e-55
Identity = 112/162 (69.14%), Postives = 121/162 (74.69%), Query Frame = 0


Query: 1   MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTAC 60
           MA +AGSSS+     +  E   E+  YGAESGWVEA TSCDHL SL SDLAHIP PDTAC
Sbjct: 1   MAAQAGSSSAQEDQFLENE---EDLFYGAESGWVEARTSCDHLASLSSDLAHIPTPDTAC 60

Query: 61  CESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALS 120
                              RC++P ENWLCLCCK+V CSRFVNKHMLQHYQQSNH LALS
Sbjct: 61  ------------------NRCQHPNENWLCLCCKDVLCSRFVNKHMLQHYQQSNHCLALS 120

Query: 121 YSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR 163
           YSDLSVWCFSCDAYLDAQLI +LRPV+E AYILKFGEAPPFR
Sbjct: 121 YSDLSVWCFSCDAYLDAQLIPQLRPVYETAYILKFGEAPPFR 141

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BLAST of Carg08126 vs. TAIR10
Match: AT2G14830.1 (Regulator of Vps4 activity in the MVB pathway protein)

HSP 1 Score: 57.8 bits (138), Expect = 7.3e-09
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 23 EEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTACC---ESFHDLENAYLFEQSTYA 82
          ++++ GA SGWVEA  +CDHL +L  DL H+P PDT C     + HD    +LF     +
Sbjct: 23 QDWILGAGSGWVEARKTCDHLNTLSPDLLHLPTPDTPCSRYKRTEHDTMFCFLFGWRRTS 82

Query: 83 RCENPKENWLC 91
          +C++  +   C
Sbjct: 83 KCKSVVKQLQC 93

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BLAST of Carg08126 vs. TAIR10
Match: AT2G26000.2 (zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 44.7 bits (104), Expect = 6.4e-05
Identity = 27/104 (25.96%), Postives = 46/104 (44.23%), Query Frame = 0


Query: 38  TSCDHLPSLCSDLAHIPPPDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVF 97
           T C+H    CS +++ P      C            E S    C+  +  W+C+ C  V 
Sbjct: 184 TMCNH-SFHCSCISNWPDSSCPVCRYCQQQP-----ENSVCCVCQTTENLWMCVICGVVG 243

Query: 98  CSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLIQ 142
           C R+   H  +H++++ H  +L      VW ++ D Y+  +LIQ
Sbjct: 244 CGRYKEGHARRHWEETEHCYSLELETQRVWDYAGDNYVH-RLIQ 280

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BLAST of Carg08126 vs. Swiss-Prot
Match: sp|Q9UBN7|HDAC6_HUMAN (Histone deacetylase 6 OS=Homo sapiens OX=9606 GN=HDAC6 PE=1 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 5.9e-16
Identity = 38/80 (47.50%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 81   CENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLI 140
            C   +ENW+CL C  V+C R++N HMLQH+  S H L LSY DLS WC+ C AY+  Q +
Sbjct: 1136 CGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVHHQAL 1195

Query: 141  QELRPVHEVAYILKFGEAPP 161
             +   V  +A+  KFGE  P
Sbjct: 1196 LD---VKNIAHQNKFGEDMP 1212

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BLAST of Carg08126 vs. Swiss-Prot
Match: sp|Q9Z2V5|HDAC6_MOUSE (Histone deacetylase 6 OS=Mus musculus OX=10090 GN=Hdac6 PE=1 SV=3)

HSP 1 Score: 81.6 bits (200), Expect = 8.6e-15
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 81   CENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLDAQLI 140
            C   +ENW+CL C  V+CSR+VN HM+ H++ S H L LS  DLS WC+ C AY+     
Sbjct: 1070 CGTVQENWVCLTCYQVYCSRYVNAHMVCHHEASEHPLVLSCVDLSTWCYVCQAYVHH--- 1129

Query: 141  QELRPVHEVAYILKFGEAPP 161
            ++L+ V   A+  KFGE  P
Sbjct: 1130 EDLQDVKNAAHQNKFGEDMP 1146

[Close]

BLAST of Carg08126 vs. Swiss-Prot
Match: sp|Q20296|HDA6_CAEEL (Histone deacetylase 6 OS=Caenorhabditis elegans OX=6239 GN=hda-6 PE=3 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 2.8e-13
Identity = 44/122 (36.07%), Postives = 62/122 (50.82%), Query Frame = 0


Query: 42  HLPSLCSDLAHIPPPDTAC--CESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCS 101
           +L  + S  AH   P   C   +    L  A +  ++  + C+   E W CL C    C 
Sbjct: 837 NLEIMDSGPAHAVVPLATCPHLKEVKPLPPAKINARTACSECQIGAEVWTCLTCYKYNCG 896

Query: 102 RFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYL-DAQLIQELRPVHEVAYILKFGEA 161
           RFVN+H + H+  S+H +ALS +DLSVWC+ CD+Y+ +  LI      HE     KFGE 
Sbjct: 897 RFVNEHAMMHHLSSSHPMALSMADLSVWCYPCDSYVHNPALIGAKSAAHE----SKFGET 954

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BLAST of Carg08126 vs. Swiss-Prot
Match: sp|Q54QE6|SIR2A_DICDI (NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum OX=44689 GN=sir2A PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.9e-10
Identity = 24/55 (43.64%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 81  CENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYL 136
           C +  ENW+C+ C  V CSR VN H  +H++ + H ++ S+SD S WC++CD Y+
Sbjct: 37  CNDESENWICMTCGVVSCSRHVNGHAGEHFENTKHPISASFSDHSFWCYTCDTYV 91

[Close]

BLAST of Carg08126 vs. Swiss-Prot
Match: sp|Q7ZUM8|UBP44_DANRE (Ubiquitin carboxyl-terminal hydrolase 44 OS=Danio rerio OX=7955 GN=usp44 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-08
Identity = 22/55 (40.00%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 81  CENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYL 136
           C   +  W CL C +V C R++ +H LQH+++ +H LAL  ++L V+C+ CD Y+
Sbjct: 29  CNTTESVWACLSCSHVACGRYIEEHALQHFKEQHHPLALEVNELYVYCYLCDDYV 83

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BLAST of Carg08126 vs. TrEMBL
Match: tr|A0A0A0KT14|A0A0A0KT14_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000940 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 3.1e-62
Identity = 120/164 (73.17%), Postives = 131/164 (79.88%), Query Frame = 0


Query: 1   MANEAGSSS--SNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDT 60
           MA +AGSSS  SNP   +IE+EV EE LYGA SGWV+ALTSCDHL SL SDLAHIPPP T
Sbjct: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60

Query: 61  ACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLA 120
            C                  ++C+NPKENW+CLCCK+VFCSRFVNKHMLQHY+QS H LA
Sbjct: 61  PC------------------SQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLA 120

Query: 121 LSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR 163
           LSYSDLSVWCFSCDAYLDAQ+IQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR 146

[Close]

BLAST of Carg08126 vs. TrEMBL
Match: tr|A0A1S3BZ94|A0A1S3BZ94_CUCME (histone deacetylase 6 OS=Cucumis melo OX=3656 GN=LOC103494801 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.5e-61
Identity = 122/166 (73.49%), Postives = 131/166 (78.92%), Query Frame = 0


Query: 1   MANEAGSSS--SNPAPCV--IEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPP 60
           MA EAGSSS  SN  P +  IE+EV EE LYGA SGWV+ALTSCDHL SL SDLAHIPPP
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  DTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHS 120
            T C                  ++C+NPKENWLCLCCK+VFCSRFVNKHMLQHY+QS H 
Sbjct: 61  QTPC------------------SQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHC 120

Query: 121 LALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR 163
           LALSYSDLSVWCFSCDAYLDAQ+IQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR 148

[Close]

BLAST of Carg08126 vs. TrEMBL
Match: tr|A0A2P6PLB2|A0A2P6PLB2_ROSCH (Putative histone deacetylase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0253411 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 4.1e-54
Identity = 109/162 (67.28%), Postives = 118/162 (72.84%), Query Frame = 0


Query: 1   MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTAC 60
           MA   GSSSS P    I E+   + LYGAESGWV+A TSCDHLPSL SDL HIP PDT C
Sbjct: 1   MATHGGSSSSPPQENPIVED-DLDLLYGAESGWVDARTSCDHLPSLSSDLVHIPTPDTHC 60

Query: 61  CESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALS 120
                              RC++P ENWLCLCCK V CSRFVNKHMLQHYQQ NHS+ALS
Sbjct: 61  ------------------NRCQHPSENWLCLCCKEVLCSRFVNKHMLQHYQQINHSVALS 120

Query: 121 YSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR 163
           YSDLSVWCFSCDAYLDAQLI +LRPV+E AY+LKFGEAPP R
Sbjct: 121 YSDLSVWCFSCDAYLDAQLIPQLRPVYETAYLLKFGEAPPIR 143

[Close]

BLAST of Carg08126 vs. TrEMBL
Match: tr|A0A2P4NA25|A0A2P4NA25_QUESU (Isoform 2 of histone deacetylase 6 OS=Quercus suber OX=58331 GN=CFP56_65092 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.2e-53
Identity = 108/167 (64.67%), Postives = 123/167 (73.65%), Query Frame = 0


Query: 1   MANEAGSSSSNPAPCVIEEEVGEE-----FLYGAESGWVEALTSCDHLPSLCSDLAHIPP 60
           MAN+   SSS+ AP   + ++ +E      +YGAESGWVEA TSCDHL SL +DLAHIP 
Sbjct: 1   MANQETGSSSSSAPQGHQVQLQQEEEELLSIYGAESGWVEARTSCDHLASLSADLAHIPT 60

Query: 61  PDTACCESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNH 120
           PDT C                   RC++P ENWLCLCCK+V CSRFVNKHMLQH+QQSNH
Sbjct: 61  PDTPC------------------YRCQHPNENWLCLCCKDVLCSRFVNKHMLQHFQQSNH 120

Query: 121 SLALSYSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR 163
            LALSYSDLSVWCFSCDAYLDAQ+I +LRPV+E AYILKFGEAPPFR
Sbjct: 121 CLALSYSDLSVWCFSCDAYLDAQVIMQLRPVYETAYILKFGEAPPFR 149

[Close]

BLAST of Carg08126 vs. TrEMBL
Match: tr|M5VQ49|M5VQ49_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G141700 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.5e-53
Identity = 107/162 (66.05%), Postives = 121/162 (74.69%), Query Frame = 0


Query: 1   MANEAGSSSSNPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDTAC 60
           MA +AGSSS+  A   +E E  EE ++GAESGWV A T CDHLPSL +DLAHIP PDT C
Sbjct: 1   MAAQAGSSSAAQAEPFVENE--EELIFGAESGWVAARTFCDHLPSLSTDLAHIPAPDTPC 60

Query: 61  CESFHDLENAYLFEQSTYARCENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALS 120
                              RC++P ENWLCLCCK+V CSRFVNKHMLQH+QQ+NH LALS
Sbjct: 61  ------------------NRCQHPNENWLCLCCKDVLCSRFVNKHMLQHFQQTNHCLALS 120

Query: 121 YSDLSVWCFSCDAYLDAQLIQELRPVHEVAYILKFGEAPPFR 163
           YSDLSVWCFSCDAYLDAQ+I +LR V+E AYILKFGEAPPFR
Sbjct: 121 YSDLSVWCFSCDAYLDAQVIPQLRGVYETAYILKFGEAPPFR 142

The following BLAST results are available for this feature:

BLAST of Carg08126 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942503.1	2.0e-65	79.49	BTB/POZ domain-containing protein NPY2-like isoform X2 [Cucurbita moschata]	[more]
XP_022149228.1	1.3e-64	77.16	histone deacetylase 6 [Momordica charantia]	[more]
XP_004152271.1	4.7e-62	73.17	PREDICTED: histone deacetylase 6 [Cucumis sativus] >KGN52775.1 hypothetical prot...	[more]
XP_008454385.1	2.3e-61	73.49	PREDICTED: histone deacetylase 6 [Cucumis melo]	[more]
XP_008373046.1	1.9e-55	69.14	PREDICTED: histone deacetylase 6 [Malus domestica] >XP_008356371.1 PREDICTED: hi...	[more]

BLAST of Carg08126 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14830.1	7.3e-09	38.03	Regulator of Vps4 activity in the MVB pathway protein	[more]
AT2G26000.2	6.4e-05	25.96	zinc finger (C3HC4-type RING finger) family protein	[more]

BLAST of Carg08126 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9UBN7\|HDAC6_HUMAN	5.9e-16	47.50	Histone deacetylase 6 OS=Homo sapiens OX=9606 GN=HDAC6 PE=1 SV=2	[more]
sp\|Q9Z2V5\|HDAC6_MOUSE	8.6e-15	46.25	Histone deacetylase 6 OS=Mus musculus OX=10090 GN=Hdac6 PE=1 SV=3	[more]
sp\|Q20296\|HDA6_CAEEL	2.8e-13	36.07	Histone deacetylase 6 OS=Caenorhabditis elegans OX=6239 GN=hda-6 PE=3 SV=2	[more]
sp\|Q54QE6\|SIR2A_DICDI	2.9e-10	43.64	NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum OX=44689 GN=sir2A PE...	[more]
sp\|Q7ZUM8\|UBP44_DANRE	1.2e-08	40.00	Ubiquitin carboxyl-terminal hydrolase 44 OS=Danio rerio OX=7955 GN=usp44 PE=2 SV...	[more]

BLAST of Carg08126 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KT14\|A0A0A0KT14_CUCSA	3.1e-62	73.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000940 PE=4 SV=1	[more]
tr\|A0A1S3BZ94\|A0A1S3BZ94_CUCME	1.5e-61	73.49	histone deacetylase 6 OS=Cucumis melo OX=3656 GN=LOC103494801 PE=4 SV=1	[more]
tr\|A0A2P6PLB2\|A0A2P6PLB2_ROSCH	4.1e-54	67.28	Putative histone deacetylase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0253411...	[more]
tr\|A0A2P4NA25\|A0A2P4NA25_QUESU	1.2e-53	64.67	Isoform 2 of histone deacetylase 6 OS=Quercus suber OX=58331 GN=CFP56_65092 PE=4...	[more]
tr\|M5VQ49\|M5VQ49_PRUPE	1.5e-53	66.05	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G141700 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000286	His_deacetylse
IPR013083	Znf_RING/FYVE/PHD
IPR001607	Znf_UBP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08126-RA	Carg08126-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001607	Zinc finger, UBP-type	SMART	SM00290	Zf_UBP_1	coord: 80..126 e-value: 3.4E-6 score: 36.6
IPR001607	Zinc finger, UBP-type	PFAM	PF02148	zf-UBP	coord: 80..136 e-value: 1.1E-17 score: 64.0
IPR001607	Zinc finger, UBP-type	PROSITE	PS50271	ZF_UBP	coord: 76..137 score: 15.844
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 34..160 e-value: 6.3E-24 score: 85.8
None	No IPR available	PANTHER	PTHR10625:SF133	SUBFAMILY NOT NAMED	coord: 2..69
None	No IPR available	PANTHER	PTHR10625:SF133	SUBFAMILY NOT NAMED	coord: 76..161
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 38..147
IPR000286	Histone deacetylase family	PANTHER	PTHR10625	HISTONE DEACETYLASE	coord: 2..69
IPR000286	Histone deacetylase family	PANTHER	PTHR10625	HISTONE DEACETYLASE	coord: 76..161

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08126	Csa4G000940	Cucumber (Chinese Long) v2	carcuB0402
Carg08126	MELO3C017992	Melon (DHL92) v3.5.1	carmeB0383
Carg08126	ClCG10G010510	Watermelon (Charleston Gray)	carwcgB0365
Carg08126	CSPI04G00480	Wild cucumber (PI 183967)	carcpiB0407
Carg08126	CmaCh04G004550	Cucurbita maxima (Rimu)	carcmaB0529
Carg08126	CmoCh04G004870	Cucurbita moschata (Rifu)	carcmoB0514
Carg08126	Cp4.1LG01g02650	Cucurbita pepo (Zucchini)	carcpeB0527
Carg08126	CsGy4G000410	Cucumber (Gy14) v2	carcgybB0383
Carg08126	MELO3C017992.2	Melon (DHL92) v3.6.1	carmedB0387
Carg08126	CsaV3_4G000430	Cucumber (Chinese Long) v3	carcucB0406
Carg08126	Cla97C10G193440	Watermelon (97103) v2	carwmbB0391
Carg08126	Bhi11G000960	Wax gourd	carwgoB0456

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08126	Wax gourd	carwgoB0463
Carg08126	Wax gourd	carwgoB0464
Carg08126	Wax gourd	carwgoB0466
Carg08126	Silver-seed gourd	carcarB217
Carg08126	Silver-seed gourd	carcarB324
Carg08126	Silver-seed gourd	carcarB401
Carg08126	Silver-seed gourd	carcarB402
Carg08126	Cucumber (Gy14) v2	carcgybB0388
Carg08126	Cucumber (Gy14) v2	carcgybB0389
Carg08126	Cucumber (Gy14) v1	carcgyB0432
Carg08126	Cucumber (Gy14) v1	carcgyB0433
Carg08126	Cucumber (Gy14) v1	carcgyB0434
Carg08126	Cucurbita maxima (Rimu)	carcmaB0528
Carg08126	Cucurbita maxima (Rimu)	carcmaB0525
Carg08126	Cucurbita maxima (Rimu)	carcmaB0526
Carg08126	Cucurbita moschata (Rifu)	carcmoB0508
Carg08126	Cucurbita moschata (Rifu)	carcmoB0509
Carg08126	Cucurbita moschata (Rifu)	carcmoB0512
Carg08126	Cucurbita moschata (Rifu)	carcmoB0516
Carg08126	Cucurbita pepo (Zucchini)	carcpeB0523
Carg08126	Cucurbita pepo (Zucchini)	carcpeB0529
Carg08126	Wild cucumber (PI 183967)	carcpiB0413
Carg08126	Cucumber (Chinese Long) v2	carcuB0407
Carg08126	Cucumber (Chinese Long) v2	carcuB0409
Carg08126	Cucumber (Chinese Long) v2	carcuB0410
Carg08126	Cucumber (Chinese Long) v3	carcucB0410
Carg08126	Cucumber (Chinese Long) v3	carcucB0412
Carg08126	Bottle gourd (USVL1VR-Ls)	carlsiB340
Carg08126	Bottle gourd (USVL1VR-Ls)	carlsiB341
Carg08126	Bottle gourd (USVL1VR-Ls)	carlsiB342
Carg08126	Melon (DHL92) v3.5.1	carmeB0377
Carg08126	Melon (DHL92) v3.5.1	carmeB0386
Carg08126	Melon (DHL92) v3.6.1	carmedB0382
Carg08126	Melon (DHL92) v3.6.1	carmedB0390
Carg08126	Watermelon (Charleston Gray)	carwcgB0368
Carg08126	Watermelon (97103) v1	carwmB0366
Carg08126	Watermelon (97103) v1	carwmB0375
Carg08126	Watermelon (97103) v2	carwmbB0394
Carg08126	Watermelon (97103) v2	carwmbB0399
Carg08126	Watermelon (97103) v2	carwmbB0401